Wall clock time and date at job start Wed Apr 1 2020 00:32:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42905 * 113.99838 * 2 1 4 4 C 1.53002 * 109.46712 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46798 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46935 * 179.97438 * 5 4 3 7 7 O 1.21274 * 119.99880 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99853 * 179.97438 * 6 5 4 9 9 C 1.46501 * 120.00133 * 180.02562 * 8 6 5 10 10 H 1.08997 * 109.51683 * 324.87156 * 9 8 6 11 11 C 1.53116 * 109.52582 * 84.99794 * 9 8 6 12 12 C 1.53036 * 109.27762 * 177.56089 * 11 9 8 13 13 N 1.46836 * 109.52370 * 300.81889 * 12 11 9 14 14 C 1.46900 * 110.99960 * 185.83852 * 13 12 11 15 15 C 1.50701 * 109.47079 * 75.58044 * 14 13 12 16 16 O 1.21296 * 120.00074 * 359.97438 * 15 14 13 17 17 N 1.34779 * 120.00312 * 180.02562 * 15 14 13 18 18 C 1.37095 * 120.00210 * 179.97438 * 17 15 14 19 19 H 1.08002 * 119.99941 * 359.97438 * 18 17 15 20 20 C 1.38948 * 120.00060 * 180.02562 * 18 17 15 21 21 N 1.31406 * 120.00130 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99961 * 180.02562 * 20 18 17 23 23 H 1.48505 * 109.47146 * 269.99900 * 22 20 18 24 24 H 1.48498 * 109.46978 * 150.00119 * 22 20 18 25 25 H 1.48495 * 109.47235 * 29.99966 * 22 20 18 26 26 C 1.46849 * 111.19877 * 61.74536 * 13 12 11 27 27 H 1.09002 * 109.46115 * 58.27082 * 26 13 12 28 28 C 1.52997 * 109.46497 * 178.23928 * 26 13 12 29 29 C 1.53040 * 109.52206 * 298.25585 * 26 13 12 30 30 H 1.09008 * 109.47400 * 300.00326 * 1 2 3 31 31 H 1.09002 * 109.47074 * 60.00139 * 1 2 3 32 32 H 1.08999 * 109.47417 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47074 * 59.99825 * 3 2 1 34 34 H 1.08994 * 109.47292 * 299.99871 * 3 2 1 35 35 H 1.08996 * 109.46855 * 60.00080 * 4 3 2 36 36 H 1.09000 * 109.47147 * 299.99343 * 4 3 2 37 37 H 1.08999 * 109.47138 * 59.99911 * 5 4 3 38 38 H 1.09003 * 109.47048 * 299.99802 * 5 4 3 39 39 H 0.97000 * 120.00172 * 359.97438 * 8 6 5 40 40 H 1.09000 * 109.50691 * 57.61757 * 11 9 8 41 41 H 1.09006 * 109.53623 * 297.52544 * 11 9 8 42 42 H 1.09002 * 109.45831 * 180.80043 * 12 11 9 43 43 H 1.09001 * 109.45349 * 60.83277 * 12 11 9 44 44 H 1.08994 * 109.47250 * 315.57634 * 14 13 12 45 45 H 1.09002 * 109.47442 * 195.57235 * 14 13 12 46 46 H 0.96997 * 119.99783 * 0.02562 * 17 15 14 47 47 H 0.96999 * 120.00138 * 0.02562 * 21 20 18 48 48 H 1.09001 * 109.46947 * 52.24159 * 28 26 13 49 49 H 1.09004 * 109.47337 * 172.23798 * 28 26 13 50 50 H 1.08998 * 109.47219 * 292.24422 * 28 26 13 51 51 H 1.09001 * 109.50107 * 299.23798 * 29 26 13 52 52 H 1.08993 * 109.53359 * 179.13836 * 29 26 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 6 4.1578 2.5824 0.0013 6 6 5.6601 2.4634 0.0026 7 8 6.1816 1.3685 0.0034 8 7 6.4240 3.5737 0.0028 9 6 7.8844 3.4581 0.0034 10 1 8.1809 2.5918 0.5948 11 6 8.3853 3.2921 -1.4339 12 6 9.9145 3.2330 -1.4324 13 7 10.4528 4.4674 -0.8470 14 6 11.9173 4.5063 -0.9551 15 6 12.3079 4.8301 -2.3741 16 8 11.4506 5.0103 -3.2131 17 7 13.6098 4.9185 -2.7113 18 6 13.9651 5.2126 -4.0023 19 1 13.2018 5.3730 -4.7493 20 6 15.3074 5.3032 -4.3500 21 7 16.2362 5.1075 -3.4413 22 14 15.7915 5.7046 -6.1090 23 1 15.9321 4.4452 -6.8834 24 1 17.0846 6.4346 -6.1121 25 1 14.7426 6.5528 -6.7298 26 6 10.0237 4.6243 0.5486 27 1 10.3530 3.7623 1.1288 28 6 10.6410 5.8970 1.1317 29 6 8.4977 4.7250 0.6063 30 1 -0.3634 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6887 1.8464 -0.8899 35 1 3.8574 0.6436 -0.8891 36 1 3.8567 0.6440 0.8909 37 1 3.8358 3.1231 0.8913 38 1 3.8366 3.1236 -0.8887 39 1 6.0069 4.4495 0.0017 40 1 8.0545 4.1392 -2.0348 41 1 7.9858 2.3694 -1.8549 42 1 10.2749 3.1291 -2.4559 43 1 10.2442 2.3776 -0.8428 44 1 12.3279 3.5355 -0.6776 45 1 12.3108 5.2718 -0.2863 46 1 14.2954 4.7733 -2.0406 47 1 15.9848 4.8994 -2.5278 48 1 10.4261 6.7393 0.4740 49 1 10.2165 6.0881 2.1173 50 1 11.7201 5.7704 1.2191 51 1 8.1687 5.5947 0.0376 52 1 8.1781 4.8261 1.6434 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755158020.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:28 Heat of formation + Delta-G solvation = -153.692841 kcal Electronic energy + Delta-G solvation = -29784.877044 eV Core-core repulsion = 25589.824252 eV Total energy + Delta-G solvation = -4195.052791 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.34255 -40.54035 -39.41151 -38.83054 -36.51078 -36.04741 -34.64962 -33.41379 -33.22635 -32.66182 -29.30988 -28.31447 -27.92925 -26.66633 -26.01922 -24.21467 -23.27177 -22.23758 -21.45367 -21.33925 -20.62614 -19.92357 -18.35887 -18.00748 -17.40237 -17.30540 -17.20047 -16.79623 -16.69037 -16.29723 -16.08362 -15.82075 -15.65344 -15.47198 -15.25148 -15.05517 -14.78168 -14.50650 -14.24930 -13.96675 -13.47785 -13.32832 -13.09972 -13.05199 -12.98234 -12.91050 -12.79492 -12.70058 -12.61815 -12.18167 -11.97992 -11.94002 -11.90739 -11.89029 -11.87645 -11.84232 -11.54100 -11.46341 -10.85162 -10.61024 -10.37680 -10.09031 -10.05586 -9.25417 -8.91020 -6.04369 1.52594 1.54677 1.65196 1.81716 2.04239 2.10666 2.38407 2.64407 2.90419 3.17497 3.25847 3.62413 3.75591 3.78211 3.91081 3.98541 4.00122 4.15844 4.18826 4.25767 4.31309 4.32692 4.38434 4.40291 4.46160 4.48254 4.50575 4.51436 4.58582 4.58947 4.72599 4.77359 4.80779 4.86358 4.93897 4.97113 5.00929 5.10258 5.11835 5.21247 5.24380 5.37917 5.50581 5.61426 5.93202 5.99541 6.19919 6.26050 6.59010 6.60925 6.78658 7.29464 7.47467 7.97671 8.56895 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020608 B = 0.001732 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1358.367076 B =16162.698972 C =17107.506434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.427 6.427 3 C 0.062 3.938 4 C -0.103 4.103 5 C -0.126 4.126 6 C 0.507 3.493 7 O -0.590 6.590 8 N -0.712 5.712 9 C 0.152 3.848 10 H 0.069 0.931 11 C -0.111 4.111 12 C 0.067 3.933 13 N -0.523 5.523 14 C 0.051 3.949 15 C 0.447 3.553 16 O -0.608 6.608 17 N -0.591 5.591 18 C -0.408 4.408 19 H 0.071 0.929 20 C -0.042 4.042 21 N -0.919 5.919 22 Si 1.135 2.865 23 H -0.272 1.272 24 H -0.272 1.272 25 H -0.278 1.278 26 C 0.079 3.921 27 H 0.047 0.953 28 C -0.146 4.146 29 C -0.104 4.104 30 H 0.054 0.946 31 H 0.051 0.949 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.051 0.949 36 H 0.057 0.943 37 H 0.129 0.871 38 H 0.122 0.878 39 H 0.418 0.582 40 H 0.066 0.934 41 H 0.053 0.947 42 H 0.049 0.951 43 H 0.031 0.969 44 H 0.063 0.937 45 H 0.119 0.881 46 H 0.383 0.617 47 H 0.259 0.741 48 H 0.055 0.945 49 H 0.090 0.910 50 H 0.057 0.943 51 H 0.082 0.918 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.229 -1.051 14.879 31.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.347 6.347 3 C -0.014 4.014 4 C -0.142 4.142 5 C -0.165 4.165 6 C 0.295 3.705 7 O -0.470 6.470 8 N -0.364 5.364 9 C 0.047 3.953 10 H 0.087 0.913 11 C -0.150 4.150 12 C -0.061 4.061 13 N -0.249 5.249 14 C -0.080 4.080 15 C 0.234 3.766 16 O -0.493 6.493 17 N -0.230 5.230 18 C -0.537 4.537 19 H 0.089 0.911 20 C -0.240 4.240 21 N -0.558 5.558 22 Si 0.955 3.045 23 H -0.198 1.198 24 H -0.197 1.197 25 H -0.203 1.203 26 C -0.029 4.029 27 H 0.065 0.935 28 C -0.203 4.203 29 C -0.142 4.142 30 H 0.073 0.927 31 H 0.070 0.930 32 H 0.109 0.891 33 H 0.088 0.912 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.076 0.924 37 H 0.147 0.853 38 H 0.140 0.860 39 H 0.256 0.744 40 H 0.085 0.915 41 H 0.072 0.928 42 H 0.068 0.932 43 H 0.049 0.951 44 H 0.081 0.919 45 H 0.137 0.863 46 H 0.217 0.783 47 H 0.070 0.930 48 H 0.074 0.926 49 H 0.109 0.891 50 H 0.076 0.924 51 H 0.100 0.900 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -26.242 -1.219 13.058 29.337 hybrid contribution -0.548 -0.805 1.377 1.686 sum -26.790 -2.024 14.434 30.499 Atomic orbital electron populations 1.22918 0.79355 1.03661 1.01087 1.87854 1.21655 1.29483 1.95681 1.22616 0.92637 0.84327 1.01867 1.21166 0.93668 0.96605 1.02723 1.21552 0.88736 0.98786 1.07452 1.21335 0.91088 0.83645 0.74428 1.90718 1.76276 1.28627 1.51363 1.45955 1.05979 1.09719 1.74713 1.20836 0.80136 0.99274 0.95086 0.91306 1.21790 0.93746 1.01515 0.97973 1.21900 0.95549 0.89645 0.99052 1.61492 1.07561 1.37235 1.18586 1.21849 0.89988 1.02565 0.93640 1.20835 0.82064 0.82188 0.91473 1.90484 1.50200 1.55399 1.53222 1.42001 1.06424 1.64180 1.10443 1.20519 0.95265 1.50309 0.87607 0.91076 1.27772 0.90715 0.95174 1.10371 1.70936 1.35039 1.46242 1.03601 0.82599 0.76059 0.77443 0.68374 1.19807 1.19654 1.20318 1.21740 0.95751 0.98790 0.86583 0.93517 1.21934 1.00631 0.96165 1.01594 1.21835 0.93085 0.96687 1.02623 0.92746 0.92997 0.89132 0.91170 0.91646 0.92974 0.92385 0.85264 0.86041 0.74443 0.91498 0.92791 0.93234 0.95062 0.91945 0.86291 0.78306 0.93024 0.92578 0.89079 0.92434 0.89954 0.87875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 11.01 113.37 1.25 1.50 16 2 O -0.43 -7.48 10.70 -148.98 -1.59 -9.08 16 3 C 0.06 0.74 5.94 71.98 0.43 1.16 16 4 C -0.10 -1.65 4.87 30.60 0.15 -1.50 16 5 C -0.13 -1.30 5.70 29.85 0.17 -1.13 16 6 C 0.51 9.86 7.80 87.66 0.68 10.55 16 7 O -0.59 -17.86 15.65 -3.01 -0.05 -17.91 16 8 N -0.71 -11.29 5.08 -442.17 -2.25 -13.54 16 9 C 0.15 3.25 2.52 45.07 0.11 3.37 16 10 H 0.07 1.74 7.58 -2.39 -0.02 1.72 16 11 C -0.11 -3.16 5.67 30.65 0.17 -2.98 16 12 C 0.07 2.25 5.11 86.33 0.44 2.69 16 13 N -0.52 -16.67 4.05 -875.67 -3.55 -20.22 16 14 C 0.05 1.77 5.31 85.56 0.45 2.23 16 15 C 0.45 21.67 7.49 87.66 0.66 22.33 16 16 O -0.61 -34.44 14.74 -3.08 -0.05 -34.48 16 17 N -0.59 -30.61 5.28 -306.98 -1.62 -32.23 16 18 C -0.41 -23.73 9.68 84.04 0.81 -22.92 16 19 H 0.07 4.46 7.16 -2.91 -0.02 4.44 16 20 C -0.04 -2.34 5.50 84.93 0.47 -1.87 16 21 N -0.92 -51.90 13.68 21.66 0.30 -51.60 16 22 Si 1.14 49.47 29.92 68.60 2.05 51.52 16 23 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 24 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 25 H -0.28 -11.71 7.11 99.48 0.71 -11.00 16 26 C 0.08 1.77 2.44 44.94 0.11 1.88 16 27 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 28 C -0.15 -2.78 8.59 71.98 0.62 -2.16 16 29 C -0.10 -1.81 4.84 30.65 0.15 -1.66 16 30 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 34 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 35 H 0.05 1.10 8.10 -2.39 -0.02 1.08 16 36 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 37 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.12 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.42 3.62 8.60 -92.71 -0.80 2.82 16 40 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 42 H 0.05 2.07 6.69 -2.39 -0.02 2.05 16 43 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 2.02 8.00 -2.39 -0.02 2.00 16 45 H 0.12 3.57 5.42 -2.39 -0.01 3.56 16 46 H 0.38 18.23 6.73 -92.71 -0.62 17.61 16 47 H 0.26 14.15 6.78 -92.71 -0.63 13.53 16 48 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 49 H 0.09 1.19 8.13 -2.38 -0.02 1.17 16 50 H 0.06 1.12 6.38 -2.39 -0.02 1.11 16 51 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 52 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -82.47 414.58 -0.44 -82.92 By element: Atomic # 1 Polarization: 33.49 SS G_CDS: -0.36 Total: 33.13 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 6.67 Total: 11.49 kcal Atomic # 7 Polarization: -110.46 SS G_CDS: -7.12 Total: -117.58 kcal Atomic # 8 Polarization: -59.78 SS G_CDS: -1.69 Total: -61.47 kcal Atomic # 14 Polarization: 49.47 SS G_CDS: 2.05 Total: 51.52 kcal Total: -82.47 -0.44 -82.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755158020.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.776 kcal (2) G-P(sol) polarization free energy of solvation -82.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds