Wall clock time and date at job start Wed Apr 1 2020 00:11:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 O 1.42906 * 109.46748 * 119.99818 * 2 1 3 5 5 C 1.42903 * 113.99577 * 90.00295 * 4 2 1 6 6 C 1.50703 * 109.46741 * 179.97438 * 5 4 2 7 7 O 1.21272 * 120.00005 * 359.97438 * 6 5 4 8 8 N 1.34781 * 119.99764 * 180.02562 * 6 5 4 9 9 C 1.47428 * 125.64593 * 359.68589 * 8 6 5 10 10 C 1.54690 * 104.93846 * 204.07571 * 9 8 6 11 11 C 1.55155 * 101.67834 * 323.27811 * 10 9 8 12 12 C 1.47020 * 125.64819 * 179.97438 * 8 6 5 13 13 H 1.08998 * 109.88075 * 59.47997 * 12 8 6 14 14 C 1.53002 * 109.88110 * 298.47244 * 12 8 6 15 15 N 1.46907 * 109.46882 * 55.00042 * 14 12 8 16 16 C 1.46903 * 110.99953 * 66.04649 * 15 14 12 17 17 C 1.46901 * 110.99594 * 189.99956 * 15 14 12 18 18 C 1.50705 * 109.47029 * 170.00094 * 17 15 14 19 19 O 1.21295 * 119.99386 * 359.97438 * 18 17 15 20 20 N 1.34769 * 120.00320 * 180.02562 * 18 17 15 21 21 C 1.37098 * 120.00176 * 180.02562 * 20 18 17 22 22 H 1.07993 * 119.99632 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99554 * 180.02562 * 21 20 18 24 24 N 1.31408 * 120.00687 * 359.97438 * 23 21 20 25 25 Si 1.86811 * 119.99403 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.46930 * 90.00252 * 25 23 21 27 27 H 1.48501 * 109.46625 * 209.99613 * 25 23 21 28 28 H 1.48493 * 109.47185 * 329.99921 * 25 23 21 29 29 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 30 30 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 32 32 H 1.09000 * 109.47050 * 239.99996 * 2 1 3 33 33 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 34 34 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 36 36 H 1.08999 * 109.46805 * 299.99656 * 5 4 2 37 37 H 1.09000 * 109.47333 * 59.99541 * 5 4 2 38 38 H 1.09000 * 110.36980 * 323.00619 * 9 8 6 39 39 H 1.08999 * 110.36500 * 85.33190 * 9 8 6 40 40 H 1.08999 * 111.10198 * 205.11314 * 10 9 8 41 41 H 1.08995 * 110.84852 * 81.33935 * 10 9 8 42 42 H 1.08996 * 110.72383 * 276.97399 * 11 10 9 43 43 H 1.09004 * 110.71851 * 153.69573 * 11 10 9 44 44 H 1.08995 * 109.47080 * 175.00093 * 14 12 8 45 45 H 1.08998 * 109.47116 * 295.00547 * 14 12 8 46 46 H 1.09004 * 109.46786 * 59.99797 * 16 15 14 47 47 H 1.08998 * 109.46875 * 179.97438 * 16 15 14 48 48 H 1.09003 * 109.46994 * 299.99975 * 16 15 14 49 49 H 1.08998 * 109.47216 * 289.99924 * 17 15 14 50 50 H 1.08997 * 109.47246 * 50.00336 * 17 15 14 51 51 H 0.97006 * 119.99666 * 359.97438 * 20 18 17 52 52 H 0.97003 * 120.00370 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 8 2.0063 -0.6736 1.1669 5 6 2.2001 -2.0782 0.9886 6 6 2.7013 -2.6832 2.2746 7 8 2.8759 -1.9808 3.2477 8 7 2.9566 -4.0049 2.3430 9 6 2.7839 -4.9713 1.2432 10 6 2.5960 -6.3394 1.9402 11 6 3.5642 -6.2131 3.1461 12 6 3.4476 -4.7225 3.5285 13 1 2.7425 -4.6051 4.3514 14 6 4.8180 -4.1776 3.9361 15 7 4.7283 -2.7245 4.1328 16 6 3.8684 -2.4005 5.2789 17 6 6.0629 -2.1316 4.2917 18 6 5.9539 -0.6292 4.2447 19 8 4.8710 -0.1043 4.0932 20 7 7.0597 0.1310 4.3699 21 6 6.9604 1.4977 4.3277 22 1 5.9962 1.9651 4.1937 23 6 8.1007 2.2813 4.4563 24 7 9.2740 1.7125 4.6189 25 14 7.9655 4.1436 4.3980 26 1 7.7521 4.6676 5.7710 27 1 9.2180 4.7135 3.8398 28 1 6.8190 4.5300 3.5370 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.2538 -2.5433 0.7125 37 1 2.9319 -2.2467 0.1986 38 1 1.9021 -4.7213 0.6533 39 1 3.6717 -4.9891 0.6110 40 1 2.8932 -7.1580 1.2847 41 1 1.5670 -6.4651 2.2769 42 1 4.5843 -6.4560 2.8488 43 1 3.2395 -6.8492 3.9696 44 1 5.1356 -4.6511 4.8650 45 1 5.5430 -4.3939 3.1515 46 1 4.2814 -2.8507 6.1817 47 1 3.8198 -1.3187 5.4023 48 1 2.8663 -2.7920 5.1034 49 1 6.4838 -2.4355 5.2501 50 1 6.7111 -2.4742 3.4852 51 1 7.9258 -0.2890 4.4907 52 1 10.0701 2.2596 4.7083 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755188945.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:36 Heat of formation + Delta-G solvation = -96.571893 kcal Electronic energy + Delta-G solvation = -32260.214880 eV Core-core repulsion = 28067.639038 eV Total energy + Delta-G solvation = -4192.575841 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.19379 -40.09827 -39.30749 -37.84232 -37.30311 -35.74953 -33.67931 -33.20528 -32.52316 -31.37856 -29.19203 -28.57656 -27.99704 -27.28787 -26.33780 -24.22389 -22.52022 -22.25523 -21.84793 -20.84347 -19.79894 -19.68310 -18.15716 -17.91426 -17.57944 -17.24090 -16.67118 -16.52039 -16.41941 -16.12128 -15.91423 -15.48065 -15.11946 -14.99612 -14.90281 -14.63383 -14.18308 -14.07342 -13.84347 -13.60751 -13.49520 -13.36735 -13.21844 -13.18461 -13.05788 -12.95521 -12.74605 -12.54909 -12.45116 -12.39313 -12.30752 -12.23131 -12.11810 -12.00035 -11.84356 -11.61623 -11.47397 -11.39467 -10.54659 -10.12470 -10.01749 -9.92456 -9.43087 -8.67416 -8.42856 -5.90264 1.36668 1.37930 1.52071 1.94030 2.14656 2.15668 2.30176 2.88371 3.08188 3.23324 3.51744 3.67675 3.81307 3.92589 3.96783 4.08289 4.12303 4.18751 4.26697 4.27132 4.32509 4.37748 4.40736 4.42312 4.54353 4.55978 4.66854 4.69696 4.71965 4.75281 4.79785 4.84599 4.89880 4.90924 4.95530 5.04978 5.17725 5.20846 5.26474 5.32058 5.38842 5.43654 5.44268 5.69669 5.98004 6.23006 6.33837 6.46133 6.68490 6.88253 7.20095 7.64043 7.77910 8.24811 8.75385 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009312 B = 0.003904 C = 0.002910 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.300673 B = 7170.071197 C = 9618.989847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.073 3.927 3 C -0.150 4.150 4 O -0.394 6.394 5 C 0.057 3.943 6 C 0.495 3.505 7 O -0.481 6.481 8 N -0.617 5.617 9 C 0.091 3.909 10 C -0.120 4.120 11 C -0.117 4.117 12 C 0.143 3.857 13 H 0.054 0.946 14 C 0.041 3.959 15 N -0.500 5.500 16 C 0.078 3.922 17 C 0.055 3.945 18 C 0.440 3.560 19 O -0.586 6.586 20 N -0.585 5.585 21 C -0.325 4.325 22 H 0.071 0.929 23 C -0.016 4.016 24 N -0.926 5.926 25 Si 0.990 3.010 26 H -0.271 1.271 27 H -0.267 1.267 28 H -0.276 1.276 29 H 0.089 0.911 30 H 0.065 0.935 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.042 0.958 34 H 0.038 0.962 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.080 0.920 38 H 0.086 0.914 39 H 0.071 0.929 40 H 0.108 0.892 41 H 0.078 0.922 42 H 0.088 0.912 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.079 0.921 46 H -0.001 1.001 47 H 0.039 0.961 48 H 0.064 0.936 49 H 0.053 0.947 50 H 0.097 0.903 51 H 0.392 0.608 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.850 -19.995 -11.399 26.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.016 3.984 3 C -0.207 4.207 4 O -0.313 6.313 5 C -0.023 4.023 6 C 0.281 3.719 7 O -0.351 6.351 8 N -0.357 5.357 9 C -0.031 4.031 10 C -0.158 4.158 11 C -0.155 4.155 12 C 0.039 3.961 13 H 0.072 0.928 14 C -0.088 4.088 15 N -0.224 5.224 16 C -0.070 4.070 17 C -0.076 4.076 18 C 0.227 3.773 19 O -0.469 6.469 20 N -0.224 5.224 21 C -0.454 4.454 22 H 0.089 0.911 23 C -0.214 4.214 24 N -0.568 5.568 25 Si 0.814 3.186 26 H -0.197 1.197 27 H -0.192 1.192 28 H -0.201 1.201 29 H 0.107 0.893 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.118 0.882 36 H 0.113 0.887 37 H 0.097 0.903 38 H 0.104 0.896 39 H 0.089 0.911 40 H 0.127 0.873 41 H 0.096 0.904 42 H 0.106 0.894 43 H 0.114 0.886 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.017 0.983 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.071 0.929 50 H 0.115 0.885 51 H 0.225 0.775 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.523 -18.733 -11.198 26.215 hybrid contribution 1.115 0.723 0.870 1.588 sum -13.408 -18.010 -10.328 24.714 Atomic orbital electron populations 1.22241 0.94349 1.02854 1.02849 1.22342 0.94824 0.93473 0.87737 1.21878 1.00730 0.95384 1.02733 1.88158 1.86969 1.19507 1.36708 1.22245 1.01460 0.83014 0.95579 1.20278 0.79435 0.81606 0.90554 1.90997 1.46833 1.59769 1.37497 1.48344 1.67482 1.05978 1.13853 1.22507 1.02088 0.88756 0.89718 1.22710 1.00107 0.96170 0.96783 1.22659 1.01677 0.91382 0.99781 1.21652 0.93281 0.92683 0.88477 0.92770 1.22787 0.98470 0.86960 1.00573 1.61937 1.08271 1.09980 1.42228 1.21936 0.96659 1.00617 0.87796 1.21734 0.92942 0.91579 1.01350 1.20840 0.84331 0.90098 0.82041 1.90586 1.28079 1.75046 1.53184 1.41936 1.08492 1.06109 1.65863 1.19576 0.94836 0.82647 1.48377 0.91060 1.25975 0.94017 1.04706 0.96723 1.69680 0.98690 1.37880 1.50499 0.84974 0.77844 0.77124 0.78642 1.19697 1.19163 1.20106 0.89267 0.91565 0.93554 0.90222 0.93851 0.94253 0.88176 0.88656 0.90256 0.89567 0.91080 0.87342 0.90357 0.89357 0.88596 0.93528 0.90285 0.98315 0.94235 0.91696 0.92897 0.88495 0.77467 0.91483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.32 9.53 71.98 0.69 -2.63 16 2 C 0.07 1.90 3.34 30.60 0.10 2.00 16 3 C -0.15 -4.21 9.56 71.98 0.69 -3.52 16 4 O -0.39 -14.17 9.52 -129.94 -1.24 -15.40 16 5 C 0.06 1.55 5.24 71.24 0.37 1.92 16 6 C 0.50 16.47 7.47 87.66 0.65 17.12 16 7 O -0.48 -21.48 9.57 20.68 0.20 -21.28 16 8 N -0.62 -14.68 3.07 -788.48 -2.42 -17.10 16 9 C 0.09 1.21 6.68 86.78 0.58 1.79 16 10 C -0.12 -1.01 7.07 31.91 0.23 -0.78 16 11 C -0.12 -1.35 6.48 31.78 0.21 -1.15 16 12 C 0.14 3.14 2.88 45.34 0.13 3.27 16 13 H 0.05 1.36 6.87 -2.39 -0.02 1.35 16 14 C 0.04 1.08 4.58 86.30 0.40 1.48 16 15 N -0.50 -19.14 1.90 -927.02 -1.76 -20.90 16 16 C 0.08 3.20 6.93 127.69 0.88 4.08 16 17 C 0.06 2.29 5.45 85.56 0.47 2.75 16 18 C 0.44 23.91 7.47 87.66 0.66 24.57 16 19 O -0.59 -36.82 13.15 2.30 0.03 -36.79 16 20 N -0.58 -33.31 5.29 -306.99 -1.62 -34.93 16 21 C -0.32 -20.12 9.68 84.04 0.81 -19.30 16 22 H 0.07 4.76 7.16 -2.91 -0.02 4.74 16 23 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 24 N -0.93 -53.28 13.05 21.66 0.28 -53.00 16 25 Si 0.99 46.26 29.55 68.60 2.03 48.28 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.27 -11.63 7.11 99.48 0.71 -10.92 16 28 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 29 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.07 1.14 7.87 -2.39 -0.02 1.12 16 31 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.08 1.63 7.79 -2.39 -0.02 1.61 16 33 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 34 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.10 1.87 7.57 -2.39 -0.02 1.86 16 37 H 0.08 1.89 8.08 -2.39 -0.02 1.87 16 38 H 0.09 0.87 7.48 -2.39 -0.02 0.85 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.11 0.41 8.14 -2.39 -0.02 0.39 16 41 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 42 H 0.09 0.89 7.78 -2.39 -0.02 0.87 16 43 H 0.10 0.85 8.14 -2.38 -0.02 0.84 16 44 H 0.05 1.12 8.12 -2.39 -0.02 1.10 16 45 H 0.08 1.95 7.82 -2.39 -0.02 1.93 16 46 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 47 H 0.04 2.04 5.80 -2.39 -0.01 2.03 16 48 H 0.06 2.58 5.38 -2.39 -0.01 2.57 16 49 H 0.05 2.01 8.12 -2.39 -0.02 1.99 16 50 H 0.10 3.60 7.93 -2.39 -0.02 3.58 16 51 H 0.39 21.25 7.90 -92.70 -0.73 20.52 16 52 H 0.28 14.80 8.31 -92.71 -0.77 14.03 16 Total: -1.00 -86.18 405.69 3.00 -83.18 By element: Atomic # 1 Polarization: 36.61 SS G_CDS: 0.17 Total: 36.78 kcal Atomic # 6 Polarization: 23.84 SS G_CDS: 7.33 Total: 31.17 kcal Atomic # 7 Polarization: -120.41 SS G_CDS: -5.52 Total: -125.93 kcal Atomic # 8 Polarization: -72.47 SS G_CDS: -1.01 Total: -73.48 kcal Atomic # 14 Polarization: 46.26 SS G_CDS: 2.03 Total: 48.28 kcal Total: -86.18 3.00 -83.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755188945.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.392 kcal (2) G-P(sol) polarization free energy of solvation -86.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.569 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds