Wall clock time and date at job start Wed Apr 1 2020 01:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 5 5 C 1.34775 * 119.99693 * 275.00198 * 4 2 1 6 6 O 1.21274 * 120.00425 * 359.97438 * 5 4 2 7 7 C 1.50706 * 119.99541 * 179.97438 * 5 4 2 8 8 O 1.42902 * 109.46691 * 179.97438 * 7 5 4 9 9 C 1.42898 * 113.99748 * 179.97438 * 8 7 5 10 10 C 1.53009 * 109.46845 * 60.00067 * 9 8 7 11 11 C 1.52994 * 109.47366 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47566 * 300.00106 * 9 8 7 13 13 C 1.52999 * 109.47317 * 239.99669 * 2 1 3 14 14 C 1.53930 * 113.73563 * 156.72766 * 13 2 1 15 15 N 1.47961 * 86.18339 * 221.92310 * 14 13 2 16 16 C 1.46897 * 111.00105 * 137.57957 * 15 14 13 17 17 C 1.50708 * 109.47061 * 90.64502 * 16 15 14 18 18 O 1.21292 * 119.99471 * 359.97438 * 17 16 15 19 19 N 1.34774 * 120.00027 * 179.97438 * 17 16 15 20 20 C 1.37100 * 119.99683 * 179.97438 * 19 17 16 21 21 H 1.07992 * 120.00386 * 0.02562 * 20 19 17 22 22 C 1.38954 * 119.99657 * 180.02562 * 20 19 17 23 23 N 1.31409 * 120.00011 * 0.02562 * 22 20 19 24 24 Si 1.86795 * 119.99837 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47243 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.47211 * 120.00227 * 24 22 20 27 27 H 1.48496 * 109.47249 * 240.00051 * 24 22 20 28 28 C 1.47963 * 90.76057 * 24.68905 * 15 14 13 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.97000 * 120.00117 * 94.99845 * 4 2 1 33 33 H 1.09002 * 109.46644 * 299.99282 * 7 5 4 34 34 H 1.08999 * 109.46969 * 59.99809 * 7 5 4 35 35 H 1.09001 * 109.47321 * 59.99918 * 10 9 8 36 36 H 1.09005 * 109.47008 * 179.97438 * 10 9 8 37 37 H 1.08994 * 109.46854 * 299.99566 * 10 9 8 38 38 H 1.09001 * 109.47108 * 60.00159 * 11 9 8 39 39 H 1.08996 * 109.47845 * 179.97438 * 11 9 8 40 40 H 1.09002 * 109.47595 * 300.00512 * 11 9 8 41 41 H 1.09002 * 109.46598 * 59.99624 * 12 9 8 42 42 H 1.08995 * 109.47415 * 179.97438 * 12 9 8 43 43 H 1.08993 * 109.46896 * 300.00044 * 12 9 8 44 44 H 1.08997 * 112.94014 * 288.43706 * 13 2 1 45 45 H 1.08999 * 113.76042 * 336.24067 * 14 13 2 46 46 H 1.09003 * 113.75951 * 107.61073 * 14 13 2 47 47 H 1.08998 * 109.47423 * 210.63947 * 16 15 14 48 48 H 1.08999 * 109.47386 * 330.64456 * 16 15 14 49 49 H 0.97004 * 120.00086 * 0.02562 * 19 17 16 50 50 H 0.96999 * 120.00309 * 179.97438 * 23 22 20 51 51 H 1.09002 * 113.76056 * 220.99334 * 28 15 14 52 52 H 1.09007 * 113.75691 * 89.62863 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3571 6 8 1.8590 1.1586 2.4115 7 6 2.6489 -0.7288 3.5878 8 8 2.6976 0.1896 4.6815 9 6 3.1622 -0.3864 5.9039 10 6 4.5793 -0.9285 5.7060 11 6 3.1737 0.6817 6.9991 12 6 2.2319 -1.5293 6.3152 13 6 2.0400 -0.7213 -1.2492 14 6 3.4670 -0.3155 -1.6597 15 7 2.9605 -0.3148 -3.0500 16 6 3.4682 0.8452 -3.7946 17 6 4.7627 0.4788 -4.4739 18 8 5.2176 -0.6387 -4.3494 19 7 5.4147 1.3927 -5.2196 20 6 6.5925 1.0594 -5.8371 21 1 6.9977 0.0645 -5.7263 22 6 7.2650 2.0018 -6.6055 23 7 6.7723 3.2126 -6.7399 24 14 8.8694 1.5475 -7.4474 25 1 9.2068 0.1343 -7.1403 26 1 8.7224 1.7141 -8.9157 27 1 9.9549 2.4332 -6.9550 28 6 1.5822 -0.0740 -2.5687 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2491 -1.6318 1.1527 33 1 1.9759 -1.5506 3.8326 34 1 3.6480 -1.1214 3.3986 35 1 5.2421 -0.1143 5.4130 36 1 4.9339 -1.3675 6.6385 37 1 4.5715 -1.6894 4.9256 38 1 2.1643 1.0683 7.1402 39 1 3.5276 0.2423 7.9317 40 1 3.8367 1.4957 6.7060 41 1 2.2242 -2.2902 5.5347 42 1 2.5865 -1.9690 7.2473 43 1 1.2224 -1.1432 6.4561 44 1 1.8823 -1.7992 -1.2115 45 1 3.7640 0.6696 -1.3001 46 1 4.2152 -1.0840 -1.4654 47 1 2.7363 1.1441 -4.5449 48 1 3.6408 1.6721 -3.1057 49 1 5.0510 2.2864 -5.3188 50 1 7.2419 3.8706 -7.2760 51 1 0.8245 -0.6494 -3.1005 52 1 1.3280 0.9819 -2.4748 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755375194.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:39 Heat of formation + Delta-G solvation = -116.240476 kcal Electronic energy + Delta-G solvation = -29758.774930 eV Core-core repulsion = 25565.346196 eV Total energy + Delta-G solvation = -4193.428735 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.59825 -40.77779 -39.77299 -39.35193 -36.39073 -35.89651 -34.40481 -33.33196 -32.71522 -30.76580 -29.14502 -28.29534 -27.88601 -27.49255 -26.85989 -25.57171 -23.14002 -21.65137 -21.03037 -20.94288 -20.56855 -19.90162 -18.35754 -17.86188 -17.77923 -17.09687 -16.95273 -16.62838 -16.47767 -16.38134 -15.97385 -15.65856 -15.55258 -15.19513 -14.90135 -14.64781 -14.39084 -14.17881 -14.10113 -14.00109 -13.69289 -13.53717 -13.35687 -13.13664 -12.99283 -12.86900 -12.76168 -12.73204 -12.66583 -12.65965 -12.42382 -12.21708 -12.13413 -11.84350 -11.82010 -11.64852 -11.55642 -11.51302 -10.78535 -10.58875 -10.38780 -10.15970 -10.02317 -9.61796 -8.47845 -5.96845 1.35389 1.40048 1.54710 1.57404 1.80459 2.04472 2.27616 2.77806 2.96230 3.18131 3.31309 3.45767 3.63882 3.73421 3.89654 3.96754 4.08371 4.12940 4.16722 4.17922 4.23281 4.27112 4.33164 4.43197 4.47081 4.50672 4.52915 4.65709 4.67245 4.76742 4.80438 4.81194 4.81474 4.84424 4.94203 4.94482 4.99996 5.16408 5.19922 5.31650 5.33005 5.36699 5.39246 5.43347 5.52663 5.89399 6.08096 6.18873 6.57139 6.59389 7.11811 7.24556 7.55285 8.11523 8.69934 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013869 B = 0.001886 C = 0.001740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2018.476472 B =14841.370140 C =16083.753997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.063 0.937 4 N -0.709 5.709 5 C 0.510 3.490 6 O -0.575 6.575 7 C 0.040 3.960 8 O -0.387 6.387 9 C 0.095 3.905 10 C -0.179 4.179 11 C -0.139 4.139 12 C -0.176 4.176 13 C -0.096 4.096 14 C 0.009 3.991 15 N -0.481 5.481 16 C 0.023 3.977 17 C 0.442 3.558 18 O -0.618 6.618 19 N -0.577 5.577 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.015 3.985 29 H 0.078 0.922 30 H 0.042 0.958 31 H 0.077 0.923 32 H 0.417 0.583 33 H 0.110 0.890 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.086 0.914 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.094 0.906 40 H 0.051 0.949 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.124 0.876 45 H 0.061 0.939 46 H 0.074 0.926 47 H 0.108 0.892 48 H 0.073 0.927 49 H 0.395 0.605 50 H 0.277 0.723 51 H 0.110 0.890 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.504 -9.588 25.144 30.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.051 3.949 3 H 0.081 0.919 4 N -0.363 5.363 5 C 0.297 3.703 6 O -0.454 6.454 7 C -0.039 4.039 8 O -0.307 6.307 9 C 0.057 3.943 10 C -0.237 4.237 11 C -0.196 4.196 12 C -0.233 4.233 13 C -0.115 4.115 14 C -0.120 4.120 15 N -0.204 5.204 16 C -0.109 4.109 17 C 0.229 3.771 18 O -0.503 6.503 19 N -0.215 5.215 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.113 4.113 29 H 0.097 0.903 30 H 0.061 0.939 31 H 0.096 0.904 32 H 0.255 0.745 33 H 0.127 0.873 34 H 0.118 0.882 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.113 0.887 40 H 0.070 0.930 41 H 0.089 0.911 42 H 0.104 0.896 43 H 0.077 0.923 44 H 0.142 0.858 45 H 0.079 0.921 46 H 0.092 0.908 47 H 0.126 0.874 48 H 0.091 0.909 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.128 0.872 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -13.241 -9.675 24.698 29.647 hybrid contribution 0.933 0.867 -0.340 1.318 sum -12.308 -8.808 24.359 28.678 Atomic orbital electron populations 1.22083 0.93487 1.03384 1.02335 1.20921 0.95138 0.95953 0.82859 0.91889 1.45838 1.67087 1.14832 1.08521 1.20853 0.77167 0.86977 0.85351 1.90710 1.50982 1.18120 1.85538 1.22342 1.03274 0.92922 0.85377 1.88074 1.87353 1.36731 1.18496 1.21840 0.93924 0.94500 0.84060 1.22457 0.95737 1.01602 1.03866 1.21796 1.02491 0.98118 0.97212 1.22424 0.99691 0.97894 1.03325 1.23130 0.93653 1.02134 0.92575 1.24010 0.98177 1.00888 0.88965 1.68345 1.04708 1.35563 1.11757 1.22357 0.94985 0.93969 0.99604 1.20815 0.87908 0.85361 0.82990 1.90473 1.70338 1.23192 1.66335 1.41981 1.21581 1.13511 1.44439 1.19696 0.99834 0.99039 1.27660 0.90401 1.26072 1.02825 0.94749 0.97841 1.69681 1.41301 1.04354 1.40941 0.84851 0.77114 0.78230 0.78012 1.19772 1.19473 1.19597 1.24092 0.92035 1.01298 0.93902 0.90273 0.93891 0.90360 0.74535 0.87292 0.88189 0.92943 0.89540 0.91234 0.92521 0.88716 0.92982 0.91102 0.89618 0.92346 0.85755 0.92119 0.90786 0.87360 0.90884 0.77114 0.91314 0.87187 0.89887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.29 71.98 0.67 -1.69 16 2 C 0.16 2.84 2.42 44.99 0.11 2.95 16 3 H 0.06 1.53 7.37 -2.39 -0.02 1.51 16 4 N -0.71 -11.23 5.08 -442.53 -2.25 -13.48 16 5 C 0.51 11.10 7.87 87.66 0.69 11.79 16 6 O -0.57 -18.78 16.16 16.03 0.26 -18.53 16 7 C 0.04 0.61 5.62 71.24 0.40 1.01 16 8 O -0.39 -8.18 9.52 -129.94 -1.24 -9.42 16 9 C 0.10 1.30 1.14 -10.79 -0.01 1.29 16 10 C -0.18 -1.95 8.25 71.99 0.59 -1.35 16 11 C -0.14 -1.83 8.84 71.98 0.64 -1.19 16 12 C -0.18 -1.58 8.25 71.98 0.59 -0.99 16 13 C -0.10 -1.77 3.49 -10.15 -0.04 -1.80 16 14 C 0.01 0.24 7.51 86.40 0.65 0.89 16 15 N -0.48 -15.23 5.65 -912.34 -5.15 -20.39 16 16 C 0.02 0.81 5.28 85.56 0.45 1.26 16 17 C 0.44 21.89 7.83 87.66 0.69 22.58 16 18 O -0.62 -35.52 16.01 -3.07 -0.05 -35.57 16 19 N -0.58 -30.68 5.29 -306.98 -1.62 -32.30 16 20 C -0.33 -19.42 9.68 84.04 0.81 -18.60 16 21 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 22 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 23 N -0.92 -50.82 13.05 21.66 0.28 -50.54 16 24 Si 0.99 43.78 29.55 68.60 2.03 45.81 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 28 C 0.02 0.32 6.57 86.41 0.57 0.88 16 29 H 0.08 1.06 7.43 -2.39 -0.02 1.04 16 30 H 0.04 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 32 H 0.42 3.79 8.60 -92.71 -0.80 2.99 16 33 H 0.11 0.98 6.42 -2.39 -0.02 0.97 16 34 H 0.10 1.13 6.42 -2.39 -0.02 1.11 16 35 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.09 0.62 8.14 -2.38 -0.02 0.61 16 37 H 0.07 0.61 6.54 -2.39 -0.02 0.60 16 38 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 40 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.47 6.54 -2.39 -0.02 0.45 16 42 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 43 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 44 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.06 1.77 7.29 -2.39 -0.02 1.75 16 46 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 47 H 0.11 3.39 8.08 -2.39 -0.02 3.37 16 48 H 0.07 2.37 7.38 -2.39 -0.02 2.35 16 49 H 0.40 19.96 7.90 -92.70 -0.73 19.22 16 50 H 0.28 14.25 8.31 -92.71 -0.77 13.48 16 51 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 52 H 0.08 1.54 7.85 -2.38 -0.02 1.52 16 Total: -1.00 -81.83 420.14 -1.07 -82.89 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.60 Total: 34.88 kcal Atomic # 6 Polarization: 9.36 SS G_CDS: 7.28 Total: 16.64 kcal Atomic # 7 Polarization: -107.97 SS G_CDS: -8.74 Total: -116.71 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -1.03 Total: -63.51 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Total: -81.83 -1.07 -82.89 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755375194.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.346 kcal (2) G-P(sol) polarization free energy of solvation -81.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds