Wall clock time and date at job start Wed Apr 1 2020 01:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00082 * 2 1 4 4 C 1.53003 * 109.47390 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47505 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47312 * 179.97438 * 5 4 3 7 7 C 1.50711 * 109.46980 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99788 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99638 * 180.02562 * 7 6 5 10 10 C 1.47426 * 125.65171 * 359.97367 * 9 7 6 11 11 C 1.54912 * 104.83229 * 155.91153 * 10 9 7 12 12 C 1.55156 * 101.57907 * 37.01106 * 11 10 9 13 13 H 1.08993 * 110.72028 * 83.04206 * 12 11 10 14 14 N 1.46903 * 110.71850 * 206.13371 * 12 11 10 15 15 C 1.46896 * 110.99955 * 271.16036 * 14 12 11 16 16 C 1.50700 * 109.46942 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00075 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00173 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99666 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00001 * 180.27893 * 19 18 16 22 22 N 1.31414 * 119.99893 * 359.72318 * 21 19 18 23 23 Si 1.86801 * 119.99957 * 179.72309 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99793 * 23 21 19 25 25 H 1.48504 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47038 * 299.99770 * 23 21 19 27 27 C 1.47317 * 125.61259 * 180.20350 * 9 7 6 28 28 H 1.09004 * 110.06810 * 61.67615 * 27 9 7 29 29 C 1.52997 * 109.85142 * 300.41694 * 27 9 7 30 30 H 1.08992 * 109.47037 * 60.00231 * 1 2 3 31 31 H 1.09007 * 109.46679 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46736 * 299.99473 * 1 2 3 33 33 H 1.09002 * 109.47584 * 60.00103 * 3 2 1 34 34 H 1.09004 * 109.47558 * 300.00145 * 3 2 1 35 35 H 1.09004 * 109.47102 * 59.99856 * 4 3 2 36 36 H 1.09002 * 109.47349 * 300.00369 * 4 3 2 37 37 H 1.09004 * 109.46958 * 59.99891 * 5 4 3 38 38 H 1.09002 * 109.47219 * 300.00572 * 5 4 3 39 39 H 1.08997 * 109.46812 * 60.00685 * 6 5 4 40 40 H 1.08993 * 109.47268 * 299.99941 * 6 5 4 41 41 H 1.09000 * 110.36474 * 37.07029 * 10 9 7 42 42 H 1.09001 * 110.36760 * 274.74825 * 10 9 7 43 43 H 1.09003 * 111.00074 * 278.94093 * 11 10 9 44 44 H 1.09000 * 111.00393 * 155.08555 * 11 10 9 45 45 H 1.00907 * 111.00029 * 35.11549 * 14 12 11 46 46 H 1.08994 * 109.47346 * 60.00149 * 15 14 12 47 47 H 1.08998 * 109.47279 * 299.99821 * 15 14 12 48 48 H 0.97000 * 120.00140 * 0.02562 * 18 16 15 49 49 H 0.97004 * 119.99542 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.47014 * 302.39512 * 29 27 9 51 51 H 1.08996 * 109.47126 * 62.39669 * 29 27 9 52 52 H 1.08997 * 109.47598 * 182.39595 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 5.6830 2.4615 -0.0013 7 6 6.2960 3.8384 -0.0013 8 8 5.5830 4.8195 -0.0008 9 7 7.6363 3.9792 -0.0018 10 6 8.6161 2.8776 -0.0019 11 6 9.9009 3.4896 -0.6137 12 6 9.8707 4.9263 -0.0285 13 1 10.2899 4.9417 0.9775 14 7 10.5919 5.8595 -0.9043 15 6 12.0166 5.9186 -0.5511 16 6 12.7221 6.8832 -1.4692 17 8 12.0994 7.4639 -2.3331 18 7 14.0449 7.1007 -1.3304 19 6 14.6866 7.9786 -2.1654 20 1 14.1321 8.4956 -2.9346 21 6 16.0515 8.1984 -2.0260 22 7 16.7262 7.5689 -1.0904 23 14 16.9273 9.3888 -3.1686 24 1 16.3298 10.7409 -3.0271 25 1 18.3684 9.4453 -2.8143 26 1 16.7798 8.9268 -4.5721 27 6 8.3643 5.2599 0.0024 28 1 8.1275 5.8218 0.9059 29 6 7.9867 6.0762 -1.2353 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3632 0.5137 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8568 0.6439 -0.8909 36 1 3.8575 0.6435 0.8891 37 1 3.8366 3.1235 0.8887 38 1 3.8357 3.1231 -0.8912 39 1 6.0045 1.9203 -0.8911 40 1 6.0047 1.9211 0.8889 41 1 8.2587 2.0521 -0.6175 42 1 8.8054 2.5382 1.0165 43 1 9.8440 3.5098 -1.7020 44 1 10.7876 2.9504 -0.2802 45 1 10.4699 5.6121 -1.8749 46 1 12.4585 4.9279 -0.6567 47 1 12.1216 6.2553 0.4802 48 1 14.5430 6.6360 -0.6398 49 1 17.6790 7.7227 -0.9929 50 1 8.2089 5.4991 -2.1329 51 1 6.9221 6.3081 -1.2067 52 1 8.5601 7.0031 -1.2482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755652498.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:50 Heat of formation + Delta-G solvation = -125.183398 kcal Electronic energy + Delta-G solvation = -29225.052776 eV Core-core repulsion = 25031.236247 eV Total energy + Delta-G solvation = -4193.816529 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.51062 -38.67668 -38.35294 -37.78870 -35.09326 -34.76011 -33.81219 -31.54496 -31.22032 -30.88123 -29.74929 -27.04609 -26.60843 -25.26123 -24.53868 -23.67795 -22.92675 -21.63018 -20.28217 -19.34056 -18.97539 -17.95474 -17.34119 -16.83201 -16.74332 -16.27450 -16.03453 -15.83683 -15.55922 -15.17261 -15.08792 -14.53684 -14.44056 -13.98933 -13.74156 -13.71786 -13.49368 -13.02981 -12.93984 -12.87162 -12.73535 -12.42714 -12.21960 -12.19101 -12.02131 -11.90913 -11.81371 -11.55873 -11.49333 -11.44588 -11.35097 -11.05066 -11.03283 -10.86309 -10.78764 -10.45289 -10.22834 -10.11257 -9.83759 -9.51554 -8.79506 -8.49545 -8.09259 -7.97654 -6.43347 -3.84241 2.50512 2.73204 3.19259 3.25140 3.29530 3.31504 3.88445 4.01626 4.18501 4.25142 4.39117 4.47400 4.49433 4.63986 4.79195 4.81707 4.86628 4.91979 4.92832 4.99334 5.03101 5.12251 5.13391 5.19245 5.20058 5.24561 5.29944 5.33204 5.36043 5.50302 5.51075 5.59408 5.63923 5.75868 5.82982 5.84166 5.86125 5.94361 5.97304 6.14950 6.24383 6.42285 6.60188 6.70438 7.14341 7.38732 7.53609 7.56803 8.04115 8.04675 8.59288 9.16218 9.52268 10.03613 10.74244 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.043053 B = 0.001449 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.208100 B =19316.555409 C =19581.015473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.395 6.395 3 C 0.060 3.940 4 C -0.118 4.118 5 C -0.102 4.102 6 C -0.135 4.135 7 C 0.527 3.473 8 O -0.538 6.538 9 N -0.618 5.618 10 C 0.102 3.898 11 C -0.167 4.167 12 C 0.082 3.918 13 H 0.093 0.907 14 N -0.653 5.653 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.103 0.897 21 C 0.024 3.976 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C 0.144 3.856 28 H 0.077 0.923 29 C -0.152 4.152 30 H 0.041 0.959 31 H 0.085 0.915 32 H 0.041 0.959 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.354 0.646 46 H 0.045 0.955 47 H 0.087 0.913 48 H 0.392 0.608 49 H 0.272 0.728 50 H 0.047 0.953 51 H 0.059 0.941 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.965 -17.439 6.007 29.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.314 6.314 3 C -0.017 4.017 4 C -0.156 4.156 5 C -0.140 4.140 6 C -0.175 4.175 7 C 0.316 3.684 8 O -0.415 6.415 9 N -0.353 5.353 10 C -0.021 4.021 11 C -0.207 4.207 12 C -0.030 4.030 13 H 0.111 0.889 14 N -0.285 5.285 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.467 6.467 18 N -0.199 5.199 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C 0.041 3.959 28 H 0.095 0.905 29 C -0.210 4.210 30 H 0.060 0.940 31 H 0.104 0.896 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.111 0.889 40 H 0.111 0.889 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.098 0.902 44 H 0.104 0.896 45 H 0.175 0.825 46 H 0.063 0.937 47 H 0.105 0.895 48 H 0.225 0.775 49 H 0.082 0.918 50 H 0.067 0.933 51 H 0.078 0.922 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -23.677 -16.098 5.830 29.219 hybrid contribution 1.105 -0.482 -0.380 1.265 sum -22.572 -16.580 5.449 28.532 Atomic orbital electron populations 1.22741 0.80955 1.02757 1.00063 1.87858 1.19801 1.28295 1.95464 1.22564 0.94172 0.84490 1.00462 1.21528 0.93081 0.97557 1.03431 1.21241 0.92810 0.95968 1.03972 1.21634 0.96740 0.94689 1.04398 1.20322 0.80386 0.91659 0.76010 1.90704 1.60024 1.40913 1.49846 1.48762 1.04949 1.08213 1.73377 1.22257 0.88806 0.90129 1.00924 1.23586 0.97457 0.98147 1.01530 1.22625 0.93359 0.88981 0.98050 0.88856 1.60059 1.09543 1.50875 1.08041 1.21708 0.88137 0.98136 1.00222 1.19790 0.83014 0.86978 0.87708 1.90532 1.65716 1.53004 1.37435 1.41848 1.06517 1.39594 1.31969 1.19661 0.91231 1.19356 1.12756 0.87967 1.25248 0.96563 0.98394 0.97607 1.69605 1.09286 1.42703 1.32737 0.85925 0.77842 0.80454 0.80056 1.19863 1.20971 1.19923 1.21560 0.90173 0.84139 1.00023 0.90483 1.21934 1.01954 1.01251 0.95846 0.94029 0.89629 0.94039 0.93158 0.93140 0.90988 0.91001 0.90919 0.90879 0.88907 0.88925 0.90610 0.91105 0.90199 0.89616 0.82485 0.93742 0.89500 0.77475 0.91821 0.93349 0.92189 0.89421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.40 -3.34 10.70 -35.23 -0.38 -3.71 16 3 C 0.06 0.42 5.94 37.16 0.22 0.64 16 4 C -0.12 -0.76 5.58 -26.73 -0.15 -0.91 16 5 C -0.10 -0.76 4.50 -26.74 -0.12 -0.88 16 6 C -0.13 -0.97 4.71 -27.88 -0.13 -1.10 16 7 C 0.53 5.90 7.63 -10.98 -0.08 5.82 16 8 O -0.54 -8.06 14.89 5.56 0.08 -7.98 16 9 N -0.62 -6.41 3.09 -162.79 -0.50 -6.91 16 10 C 0.10 0.76 6.69 -2.53 -0.02 0.74 16 11 C -0.17 -1.46 6.67 -24.58 -0.16 -1.62 16 12 C 0.08 0.91 3.11 -65.88 -0.21 0.71 16 13 H 0.09 0.97 7.86 -51.93 -0.41 0.56 16 14 N -0.65 -9.68 4.44 -106.06 -0.47 -10.15 16 15 C 0.05 0.82 6.04 -4.98 -0.03 0.79 16 16 C 0.44 10.03 7.82 -10.98 -0.09 9.94 16 17 O -0.58 -15.45 15.78 5.55 0.09 -15.36 16 18 N -0.56 -13.92 5.29 -10.96 -0.06 -13.98 16 19 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 2.96 7.16 -52.49 -0.38 2.58 16 21 C 0.02 0.62 5.50 -17.47 -0.10 0.53 16 22 N -0.90 -24.20 13.05 55.50 0.72 -23.48 16 23 Si 0.93 20.88 29.55 -169.99 -5.02 15.85 16 24 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 25 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 27 C 0.14 1.75 3.50 -66.79 -0.23 1.51 16 28 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 29 C -0.15 -2.10 8.22 37.16 0.31 -1.80 16 30 H 0.04 0.20 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 0.36 8.14 -51.92 -0.42 -0.06 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 38 H 0.07 0.62 8.10 -51.93 -0.42 0.20 16 39 H 0.09 0.54 7.85 -51.93 -0.41 0.13 16 40 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.43 7.48 -51.93 -0.39 0.04 16 42 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.08 0.76 7.79 -51.93 -0.40 0.35 16 44 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.35 5.54 7.36 -39.29 -0.29 5.25 16 46 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.09 1.31 8.08 -51.93 -0.42 0.89 16 48 H 0.39 9.24 7.90 -40.82 -0.32 8.91 16 49 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 50 H 0.05 0.66 7.93 -51.93 -0.41 0.24 16 51 H 0.06 0.90 6.77 -51.93 -0.35 0.55 16 52 H 0.09 1.36 7.40 -51.93 -0.38 0.97 16 LS Contribution 420.50 15.07 6.34 6.34 Total: -1.00 -33.22 420.50 -8.24 -41.45 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -9.21 Total: 10.70 kcal Atomic # 6 Polarization: 7.06 SS G_CDS: 0.18 Total: 7.23 kcal Atomic # 7 Polarization: -54.21 SS G_CDS: -0.31 Total: -54.52 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.21 Total: -27.05 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -33.22 -8.24 -41.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755652498.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.730 kcal (2) G-P(sol) polarization free energy of solvation -33.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds