Wall clock time and date at job start Wed Apr 1 2020 01:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00082 * 2 1 4 4 C 1.53003 * 109.47390 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47505 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47312 * 179.97438 * 5 4 3 7 7 C 1.50711 * 109.46980 * 180.02562 * 6 5 4 8 8 O 1.21283 * 119.99788 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99638 * 180.02562 * 7 6 5 10 10 C 1.47426 * 125.65171 * 359.97367 * 9 7 6 11 11 C 1.54912 * 104.83229 * 155.91153 * 10 9 7 12 12 C 1.55156 * 101.57907 * 37.01106 * 11 10 9 13 13 H 1.08993 * 110.72028 * 83.04206 * 12 11 10 14 14 N 1.46903 * 110.71850 * 206.13371 * 12 11 10 15 15 C 1.46896 * 110.99955 * 271.16036 * 14 12 11 16 16 C 1.50700 * 109.46942 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00282 * 359.97438 * 16 15 14 18 18 N 1.34777 * 120.00075 * 179.97438 * 16 15 14 19 19 C 1.37104 * 120.00173 * 180.02562 * 18 16 15 20 20 H 1.08002 * 119.99666 * 359.97438 * 19 18 16 21 21 C 1.38945 * 120.00001 * 180.27893 * 19 18 16 22 22 N 1.31414 * 119.99893 * 359.72318 * 21 19 18 23 23 Si 1.86801 * 119.99957 * 179.72309 * 21 19 18 24 24 H 1.48496 * 109.47031 * 59.99793 * 23 21 19 25 25 H 1.48504 * 109.46970 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.47038 * 299.99770 * 23 21 19 27 27 C 1.47317 * 125.61259 * 180.20350 * 9 7 6 28 28 H 1.09004 * 110.06810 * 61.67615 * 27 9 7 29 29 C 1.52997 * 109.85142 * 300.41694 * 27 9 7 30 30 H 1.08992 * 109.47037 * 60.00231 * 1 2 3 31 31 H 1.09007 * 109.46679 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.46736 * 299.99473 * 1 2 3 33 33 H 1.09002 * 109.47584 * 60.00103 * 3 2 1 34 34 H 1.09004 * 109.47558 * 300.00145 * 3 2 1 35 35 H 1.09004 * 109.47102 * 59.99856 * 4 3 2 36 36 H 1.09002 * 109.47349 * 300.00369 * 4 3 2 37 37 H 1.09004 * 109.46958 * 59.99891 * 5 4 3 38 38 H 1.09002 * 109.47219 * 300.00572 * 5 4 3 39 39 H 1.08997 * 109.46812 * 60.00685 * 6 5 4 40 40 H 1.08993 * 109.47268 * 299.99941 * 6 5 4 41 41 H 1.09000 * 110.36474 * 37.07029 * 10 9 7 42 42 H 1.09001 * 110.36760 * 274.74825 * 10 9 7 43 43 H 1.09003 * 111.00074 * 278.94093 * 11 10 9 44 44 H 1.09000 * 111.00393 * 155.08555 * 11 10 9 45 45 H 1.00907 * 111.00029 * 35.11549 * 14 12 11 46 46 H 1.08994 * 109.47346 * 60.00149 * 15 14 12 47 47 H 1.08998 * 109.47279 * 299.99821 * 15 14 12 48 48 H 0.97000 * 120.00140 * 0.02562 * 18 16 15 49 49 H 0.97004 * 119.99542 * 180.02562 * 22 21 19 50 50 H 1.09003 * 109.47014 * 302.39512 * 29 27 9 51 51 H 1.08996 * 109.47126 * 62.39669 * 29 27 9 52 52 H 1.08997 * 109.47598 * 182.39595 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 -0.0006 5 6 4.1578 2.5823 -0.0013 6 6 5.6830 2.4615 -0.0013 7 6 6.2960 3.8384 -0.0013 8 8 5.5830 4.8195 -0.0008 9 7 7.6363 3.9792 -0.0018 10 6 8.6161 2.8776 -0.0019 11 6 9.9009 3.4896 -0.6137 12 6 9.8707 4.9263 -0.0285 13 1 10.2899 4.9417 0.9775 14 7 10.5919 5.8595 -0.9043 15 6 12.0166 5.9186 -0.5511 16 6 12.7221 6.8832 -1.4692 17 8 12.0994 7.4639 -2.3331 18 7 14.0449 7.1007 -1.3304 19 6 14.6866 7.9786 -2.1654 20 1 14.1321 8.4956 -2.9346 21 6 16.0515 8.1984 -2.0260 22 7 16.7262 7.5689 -1.0904 23 14 16.9273 9.3888 -3.1686 24 1 16.3298 10.7409 -3.0271 25 1 18.3684 9.4453 -2.8143 26 1 16.7798 8.9268 -4.5721 27 6 8.3643 5.2599 0.0024 28 1 8.1275 5.8218 0.9059 29 6 7.9867 6.0762 -1.2353 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0278 -0.0005 32 1 -0.3632 0.5137 0.8900 33 1 1.6887 1.8464 0.8900 34 1 1.6886 1.8464 -0.8900 35 1 3.8568 0.6439 -0.8909 36 1 3.8575 0.6435 0.8891 37 1 3.8366 3.1235 0.8887 38 1 3.8357 3.1231 -0.8912 39 1 6.0045 1.9203 -0.8911 40 1 6.0047 1.9211 0.8889 41 1 8.2587 2.0521 -0.6175 42 1 8.8054 2.5382 1.0165 43 1 9.8440 3.5098 -1.7020 44 1 10.7876 2.9504 -0.2802 45 1 10.4699 5.6121 -1.8749 46 1 12.4585 4.9279 -0.6567 47 1 12.1216 6.2553 0.4802 48 1 14.5430 6.6360 -0.6398 49 1 17.6790 7.7227 -0.9929 50 1 8.2089 5.4991 -2.1329 51 1 6.9221 6.3081 -1.2067 52 1 8.5601 7.0031 -1.2482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755652498.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:15:46 Heat of formation + Delta-G solvation = -148.971326 kcal Electronic energy + Delta-G solvation = -29226.084298 eV Core-core repulsion = 25031.236247 eV Total energy + Delta-G solvation = -4194.848051 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.87 seconds Orbital eigenvalues (eV) -41.37746 -40.13491 -39.14969 -38.80567 -36.16654 -35.70425 -35.51056 -33.25862 -32.42304 -31.75201 -30.47240 -28.20437 -27.40097 -26.49305 -25.62190 -24.80668 -23.62155 -22.20695 -21.18568 -21.04752 -19.91206 -19.83031 -18.25811 -17.65563 -17.41196 -17.27959 -17.01865 -16.81408 -16.54222 -16.31668 -16.17097 -15.76776 -15.69958 -15.31247 -15.05068 -14.66351 -14.40781 -14.13576 -13.94950 -13.69080 -13.56698 -13.48573 -13.39629 -13.36263 -13.05119 -12.95746 -12.72945 -12.63185 -12.47502 -12.41846 -12.38107 -12.30777 -12.11904 -11.89214 -11.81338 -11.67185 -11.58194 -11.48446 -10.75939 -10.63073 -10.31676 -9.99259 -9.64526 -9.25185 -8.45243 -5.93501 1.40464 1.42662 1.52975 1.67980 1.93724 2.08587 2.30636 2.81219 2.94589 3.22595 3.41604 3.52229 3.69173 3.86336 3.95873 3.97731 4.08930 4.18455 4.29749 4.34249 4.34609 4.37140 4.41495 4.48449 4.52077 4.53817 4.54350 4.63643 4.65358 4.71640 4.73430 4.77187 4.81441 4.85465 4.87862 4.99087 5.02516 5.10585 5.13882 5.28783 5.37705 5.39988 5.42402 5.45210 5.91594 6.12944 6.21474 6.38077 6.59460 6.62700 7.14897 7.21276 7.59213 8.15033 8.71787 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.043053 B = 0.001449 C = 0.001430 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 650.208100 B =19316.555409 C =19581.015473 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.417 6.417 3 C 0.055 3.945 4 C -0.109 4.109 5 C -0.097 4.097 6 C -0.125 4.125 7 C 0.518 3.482 8 O -0.587 6.587 9 N -0.617 5.617 10 C 0.103 3.897 11 C -0.160 4.160 12 C 0.085 3.915 13 H 0.109 0.891 14 N -0.670 5.670 15 C 0.068 3.932 16 C 0.436 3.564 17 O -0.625 6.625 18 N -0.572 5.572 19 C -0.335 4.335 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.989 3.011 24 H -0.274 1.274 25 H -0.270 1.270 26 H -0.272 1.272 27 C 0.144 3.856 28 H 0.063 0.937 29 C -0.140 4.140 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.052 0.948 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.115 0.885 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.095 0.905 43 H 0.071 0.929 44 H 0.107 0.893 45 H 0.347 0.653 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.397 0.603 49 H 0.277 0.723 50 H 0.047 0.953 51 H 0.041 0.959 52 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.476 -19.979 6.890 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.337 6.337 3 C -0.021 4.021 4 C -0.147 4.147 5 C -0.135 4.135 6 C -0.164 4.164 7 C 0.309 3.691 8 O -0.467 6.467 9 N -0.351 5.351 10 C -0.019 4.019 11 C -0.200 4.200 12 C -0.026 4.026 13 H 0.127 0.873 14 N -0.302 5.302 15 C -0.064 4.064 16 C 0.224 3.776 17 O -0.512 6.512 18 N -0.210 5.210 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.813 3.187 24 H -0.200 1.200 25 H -0.194 1.194 26 H -0.197 1.197 27 C 0.040 3.960 28 H 0.082 0.918 29 C -0.198 4.198 30 H 0.065 0.935 31 H 0.115 0.885 32 H 0.067 0.933 33 H 0.071 0.929 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.075 0.925 39 H 0.133 0.867 40 H 0.137 0.863 41 H 0.120 0.880 42 H 0.113 0.887 43 H 0.089 0.911 44 H 0.125 0.875 45 H 0.167 0.833 46 H 0.093 0.907 47 H 0.124 0.876 48 H 0.231 0.769 49 H 0.087 0.913 50 H 0.066 0.934 51 H 0.060 0.940 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -23.173 -18.688 6.742 30.524 hybrid contribution 0.861 0.324 -0.652 1.127 sum -22.312 -18.365 6.090 29.533 Atomic orbital electron populations 1.22913 0.79726 1.03793 1.00707 1.87815 1.21306 1.28936 1.95596 1.22637 0.94677 0.84210 1.00614 1.21436 0.92559 0.96699 1.03980 1.21153 0.93403 0.96314 1.02612 1.21663 0.95886 0.92289 1.06606 1.21119 0.80339 0.92713 0.74907 1.90686 1.61177 1.42808 1.52066 1.48829 1.05269 1.08339 1.72671 1.22514 0.87131 0.89493 1.02807 1.23545 0.99182 0.96249 1.01009 1.22633 0.91812 0.89903 0.98222 0.87282 1.59979 1.08903 1.53116 1.08216 1.21546 0.88393 0.97491 0.98976 1.20964 0.82369 0.86747 0.87531 1.90505 1.66486 1.54708 1.39451 1.41905 1.07368 1.39686 1.32002 1.19616 0.92103 1.21088 1.13685 0.90503 1.25966 0.96615 0.99568 0.98816 1.69658 1.09707 1.43240 1.33381 0.85043 0.77234 0.78192 0.78207 1.19952 1.19443 1.19728 1.21415 0.91375 0.85045 0.98186 0.91846 1.21762 1.00252 1.00707 0.97091 0.93458 0.88475 0.93341 0.92942 0.93154 0.90508 0.90237 0.92179 0.92511 0.86730 0.86289 0.88043 0.88704 0.91065 0.87497 0.83283 0.90724 0.87645 0.76893 0.91318 0.93372 0.94032 0.91599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 11.01 113.37 1.25 1.49 16 2 O -0.42 -6.60 10.70 -148.98 -1.59 -8.19 16 3 C 0.05 0.73 5.94 71.98 0.43 1.15 16 4 C -0.11 -1.22 5.58 30.59 0.17 -1.05 16 5 C -0.10 -1.34 4.50 30.59 0.14 -1.20 16 6 C -0.13 -1.48 4.71 29.85 0.14 -1.34 16 7 C 0.52 11.04 7.63 87.66 0.67 11.70 16 8 O -0.59 -18.04 14.89 -3.04 -0.05 -18.09 16 9 N -0.62 -11.65 3.09 -787.33 -2.43 -14.08 16 10 C 0.10 1.10 6.69 86.86 0.58 1.68 16 11 C -0.16 -2.24 6.67 31.99 0.21 -2.03 16 12 C 0.09 1.73 3.11 46.10 0.14 1.87 16 13 H 0.11 1.92 7.86 -2.39 -0.02 1.90 16 14 N -0.67 -19.29 4.44 -489.47 -2.17 -21.46 16 15 C 0.07 2.10 6.04 85.56 0.52 2.62 16 16 C 0.44 20.01 7.82 87.66 0.69 20.70 16 17 O -0.62 -34.06 15.78 -3.07 -0.05 -34.11 16 18 N -0.57 -28.56 5.29 -306.98 -1.62 -30.18 16 19 C -0.34 -18.84 9.68 84.04 0.81 -18.03 16 20 H 0.08 4.63 7.16 -2.91 -0.02 4.61 16 21 C -0.01 -0.51 5.50 84.92 0.47 -0.04 16 22 N -0.92 -48.77 13.05 21.66 0.28 -48.49 16 23 Si 0.99 42.62 29.55 68.60 2.03 44.64 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 26 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 27 C 0.14 3.41 3.50 45.28 0.16 3.57 16 28 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 29 C -0.14 -4.04 8.22 71.98 0.59 -3.44 16 30 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 32 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 33 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 36 H 0.08 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.06 0.98 8.10 -2.38 -0.02 0.96 16 38 H 0.06 0.97 8.10 -2.39 -0.02 0.95 16 39 H 0.11 0.91 7.85 -2.39 -0.02 0.89 16 40 H 0.12 0.83 8.14 -2.39 -0.02 0.82 16 41 H 0.10 0.65 7.48 -2.39 -0.02 0.63 16 42 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 43 H 0.07 1.16 7.79 -2.39 -0.02 1.14 16 44 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.35 10.80 7.36 -89.69 -0.66 10.14 16 46 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.11 2.92 8.08 -2.39 -0.02 2.90 16 48 H 0.40 18.64 7.90 -92.71 -0.73 17.91 16 49 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 50 H 0.05 1.34 7.93 -2.39 -0.02 1.33 16 51 H 0.04 1.33 6.77 -2.39 -0.02 1.31 16 52 H 0.07 2.16 7.40 -2.39 -0.02 2.14 16 Total: -1.00 -75.15 420.50 0.88 -74.27 By element: Atomic # 1 Polarization: 38.52 SS G_CDS: -0.48 Total: 38.04 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: 6.96 Total: 17.65 kcal Atomic # 7 Polarization: -108.27 SS G_CDS: -5.94 Total: -114.21 kcal Atomic # 8 Polarization: -58.70 SS G_CDS: -1.69 Total: -60.38 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -75.15 0.88 -74.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755652498.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.703 kcal (2) G-P(sol) polarization free energy of solvation -75.149 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.87 seconds