Wall clock time and date at job start Wed Apr 1 2020 01:04:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42910 * 113.99857 * 2 1 4 4 C 1.52999 * 109.46871 * 179.97438 * 3 2 1 5 5 C 1.53007 * 109.46875 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.47095 * 180.02562 * 5 4 3 7 7 O 1.21280 * 120.00146 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99930 * 180.02562 * 6 5 4 9 9 C 1.46506 * 120.00158 * 180.02562 * 8 6 5 10 10 H 1.09001 * 109.50001 * 325.08250 * 9 8 6 11 11 C 1.53116 * 109.50269 * 85.19467 * 9 8 6 12 12 C 1.53123 * 109.16014 * 177.59627 * 11 9 8 13 13 C 1.53032 * 109.27575 * 302.34954 * 12 11 9 14 14 N 1.46844 * 109.52721 * 59.17939 * 13 12 11 15 15 C 1.46900 * 111.00005 * 174.15818 * 14 13 12 16 16 C 1.50697 * 109.47092 * 288.15719 * 15 14 13 17 17 O 1.21291 * 120.00422 * 0.02562 * 16 15 14 18 18 N 1.34784 * 120.00088 * 179.97438 * 16 15 14 19 19 C 1.37090 * 119.99920 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00334 * 0.02562 * 19 18 16 21 21 C 1.38951 * 119.99706 * 180.02562 * 19 18 16 22 22 N 1.31406 * 120.00158 * 0.02562 * 21 19 18 23 23 Si 1.86808 * 119.99958 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47068 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.46852 * 119.99992 * 23 21 19 26 26 H 1.48503 * 109.47139 * 240.00019 * 23 21 19 27 27 C 1.46841 * 111.19627 * 298.25681 * 14 13 12 28 28 H 1.09002 * 109.45533 * 301.72807 * 27 14 13 29 29 C 1.53000 * 109.46156 * 181.75857 * 27 14 13 30 30 H 1.09001 * 109.47118 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47128 * 299.99753 * 1 2 3 32 32 H 1.08997 * 109.47416 * 59.99826 * 1 2 3 33 33 H 1.09002 * 109.46986 * 60.00005 * 3 2 1 34 34 H 1.09000 * 109.47069 * 300.00281 * 3 2 1 35 35 H 1.09002 * 109.47196 * 60.00275 * 4 3 2 36 36 H 1.09000 * 109.47618 * 300.00085 * 4 3 2 37 37 H 1.09002 * 109.46832 * 60.00238 * 5 4 3 38 38 H 1.09000 * 109.47218 * 300.00515 * 5 4 3 39 39 H 0.97003 * 119.99911 * 0.02562 * 8 6 5 40 40 H 1.08998 * 109.52606 * 297.50533 * 11 9 8 41 41 H 1.09003 * 109.52173 * 57.69411 * 11 9 8 42 42 H 1.08999 * 109.50110 * 62.29219 * 12 11 9 43 43 H 1.08998 * 109.50279 * 182.40632 * 12 11 9 44 44 H 1.09006 * 109.46338 * 179.19584 * 13 12 11 45 45 H 1.08997 * 109.46491 * 299.17018 * 13 12 11 46 46 H 1.08999 * 109.47485 * 48.16347 * 15 14 13 47 47 H 1.09003 * 109.47021 * 168.16338 * 15 14 13 48 48 H 0.97002 * 119.99459 * 0.02562 * 18 16 15 49 49 H 0.96997 * 120.00103 * 179.97438 * 22 21 19 50 50 H 1.09006 * 109.46931 * 307.27547 * 29 27 14 51 51 H 1.08991 * 109.47479 * 67.28167 * 29 27 14 52 52 H 1.09003 * 109.47468 * 187.28063 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3056 0.0000 4 6 3.5354 1.1847 0.0006 5 6 4.1577 2.5825 0.0000 6 6 5.6599 2.4636 0.0000 7 8 6.1816 1.3687 0.0000 8 7 6.4238 3.5739 0.0000 9 6 7.8843 3.4583 -0.0006 10 1 8.1808 2.5896 0.5872 11 6 8.3838 3.2978 -1.4390 12 6 9.9139 3.2381 -1.4360 13 6 10.4677 4.5073 -0.7846 14 7 9.9615 4.6147 0.5896 15 6 10.5810 5.7465 1.2919 16 6 12.0201 5.4207 1.5982 17 8 12.4843 4.3511 1.2639 18 7 12.7919 6.3182 2.2427 19 6 14.1012 6.0220 2.5208 20 1 14.5144 5.0696 2.2232 21 6 14.8966 6.9472 3.1858 22 7 14.3938 8.1058 3.5484 23 14 16.6810 6.5439 3.5641 24 1 17.0002 5.1859 3.0551 25 1 17.5639 7.5401 2.9059 26 1 16.8970 6.5849 5.0328 27 6 8.4971 4.7211 0.6092 28 1 8.1885 5.5910 0.0293 29 6 8.0164 4.8747 2.0536 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.6885 1.8465 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.8574 0.6437 -0.8891 36 1 3.8567 0.6440 0.8908 37 1 3.8357 3.1239 0.8896 38 1 3.8363 3.1229 -0.8904 39 1 6.0066 4.4496 0.0004 40 1 7.9842 2.3766 -1.8628 41 1 8.0537 4.1478 -2.0362 42 1 10.2429 2.3658 -0.8712 43 1 10.2773 3.1668 -2.4611 44 1 11.5567 4.4615 -0.7679 45 1 10.1497 5.3782 -1.3577 46 1 10.5357 6.6343 0.6612 47 1 10.0451 5.9341 2.2224 48 1 12.4208 7.1738 2.5097 49 1 14.9489 8.7514 4.0129 50 1 8.4333 4.0725 2.6625 51 1 8.3453 5.8370 2.4456 52 1 6.9279 4.8239 2.0817 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755714764.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:01 Heat of formation + Delta-G solvation = -124.534118 kcal Electronic energy + Delta-G solvation = -30028.801409 eV Core-core repulsion = 25835.013035 eV Total energy + Delta-G solvation = -4193.788374 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.41704 -39.13616 -38.29381 -37.62808 -34.87570 -33.97550 -33.81050 -33.22946 -31.20940 -31.01305 -28.42271 -27.44167 -26.71689 -25.91687 -24.58309 -23.14234 -21.93328 -21.40693 -20.53386 -19.77976 -19.09353 -17.84360 -17.50219 -16.75493 -16.66454 -16.27175 -16.05058 -15.60082 -15.28015 -15.16046 -14.82892 -14.56589 -14.43610 -14.01567 -13.85139 -13.80658 -13.61145 -13.36044 -13.12191 -12.59433 -12.48974 -12.29462 -12.20516 -12.11098 -12.06169 -11.90461 -11.51206 -11.43399 -11.42830 -11.29179 -11.10042 -11.00591 -10.76592 -10.60028 -10.32569 -10.26238 -10.19103 -10.09766 -9.93370 -9.46477 -9.14121 -8.44536 -7.94628 -7.84912 -6.39629 -3.80008 2.48253 2.81810 3.17815 3.28301 3.35597 3.41456 3.93322 3.99999 4.25241 4.38661 4.54251 4.63507 4.67293 4.74785 4.86266 4.87467 4.98244 4.99213 5.05758 5.07111 5.10270 5.18242 5.19290 5.25957 5.27130 5.34444 5.37564 5.55544 5.61154 5.71920 5.73435 5.73909 5.89904 5.91055 5.91498 6.02563 6.07582 6.10740 6.23100 6.29688 6.34305 6.44442 6.53871 6.73539 7.25381 7.35232 7.40278 7.57680 8.07809 8.09406 8.64908 9.21216 9.57580 10.09879 10.78349 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.028616 B = 0.001723 C = 0.001686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 978.235133 B =16242.393526 C =16600.578974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.105 4.105 5 C -0.138 4.138 6 C 0.513 3.487 7 O -0.533 6.533 8 N -0.725 5.725 9 C 0.154 3.846 10 H 0.100 0.900 11 C -0.128 4.128 12 C -0.111 4.111 13 C 0.056 3.944 14 N -0.505 5.505 15 C 0.042 3.958 16 C 0.445 3.555 17 O -0.574 6.574 18 N -0.567 5.567 19 C -0.296 4.296 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.928 3.072 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.282 1.282 27 C 0.078 3.922 28 H 0.040 0.960 29 C -0.151 4.151 30 H 0.086 0.914 31 H 0.041 0.959 32 H 0.040 0.960 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.397 0.603 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.076 0.924 43 H 0.067 0.933 44 H 0.097 0.903 45 H 0.023 0.977 46 H 0.047 0.953 47 H 0.094 0.906 48 H 0.391 0.609 49 H 0.270 0.730 50 H 0.070 0.930 51 H 0.061 0.939 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.587 -4.379 -8.208 28.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.143 4.143 5 C -0.178 4.178 6 C 0.299 3.701 7 O -0.409 6.409 8 N -0.377 5.377 9 C 0.049 3.951 10 H 0.118 0.882 11 C -0.167 4.167 12 C -0.150 4.150 13 C -0.071 4.071 14 N -0.231 5.231 15 C -0.089 4.089 16 C 0.230 3.770 17 O -0.458 6.458 18 N -0.204 5.204 19 C -0.426 4.426 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.545 5.545 23 Si 0.755 3.245 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.208 1.208 27 C -0.032 4.032 28 H 0.058 0.942 29 C -0.208 4.208 30 H 0.104 0.896 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.231 0.769 40 H 0.085 0.915 41 H 0.076 0.924 42 H 0.095 0.905 43 H 0.086 0.914 44 H 0.115 0.885 45 H 0.041 0.959 46 H 0.065 0.935 47 H 0.112 0.888 48 H 0.224 0.776 49 H 0.080 0.920 50 H 0.089 0.911 51 H 0.080 0.920 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -25.550 -6.350 -8.082 27.540 hybrid contribution -0.011 2.070 -0.004 2.070 sum -25.561 -4.280 -8.086 27.149 Atomic orbital electron populations 1.22748 0.80964 1.02874 0.99934 1.87902 1.19726 1.27973 1.95402 1.22556 0.94127 0.84757 1.00121 1.21223 0.92066 0.95843 1.05157 1.21549 0.92257 0.99430 1.04546 1.20529 0.89268 0.84332 0.75921 1.90746 1.74998 1.26504 1.48691 1.46063 1.07106 1.08817 1.75667 1.20965 0.77942 0.99390 0.96794 0.88222 1.21970 0.96744 1.01834 0.96110 1.21508 0.93760 0.99279 1.00426 1.22198 1.02254 0.95832 0.86833 1.61398 1.02530 1.42741 1.16391 1.21954 0.95920 0.91552 0.99502 1.19748 0.86977 0.86067 0.84166 1.90515 1.74339 1.24434 1.56469 1.41866 1.10895 1.16625 1.51028 1.19745 0.85782 1.02971 1.34101 0.87883 1.25237 1.00399 0.95158 0.97169 1.69615 1.37334 1.07046 1.40510 0.85820 0.81967 0.78678 0.78008 1.19222 1.20834 1.20799 1.21748 0.89124 0.95542 0.96754 0.94250 1.21973 1.00390 1.02886 0.95599 0.89561 0.94045 0.94089 0.93232 0.93287 0.90229 0.90135 0.88690 0.88785 0.76891 0.91484 0.92426 0.90495 0.91437 0.88465 0.95885 0.93461 0.88801 0.77601 0.92011 0.91120 0.92002 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.17 11.01 101.05 1.11 1.29 16 2 O -0.39 -3.53 10.70 -35.23 -0.38 -3.90 16 3 C 0.06 0.41 5.94 37.16 0.22 0.63 16 4 C -0.10 -0.85 4.87 -26.73 -0.13 -0.98 16 5 C -0.14 -0.86 5.70 -27.88 -0.16 -1.02 16 6 C 0.51 5.25 7.80 -10.99 -0.09 5.16 16 7 O -0.53 -7.95 15.64 5.56 0.09 -7.86 16 8 N -0.73 -6.49 4.29 -53.73 -0.23 -6.72 16 9 C 0.15 1.85 2.05 -67.85 -0.14 1.71 16 10 H 0.10 1.52 7.58 -51.93 -0.39 1.13 16 11 C -0.13 -1.53 5.58 -26.61 -0.15 -1.68 16 12 C -0.11 -1.52 6.09 -26.65 -0.16 -1.69 16 13 C 0.06 0.89 5.11 -3.84 -0.02 0.87 16 14 N -0.51 -8.19 4.12 -228.14 -0.94 -9.13 16 15 C 0.04 0.73 5.26 -4.98 -0.03 0.70 16 16 C 0.45 10.40 7.47 -10.98 -0.08 10.31 16 17 O -0.57 -15.41 14.42 5.55 0.08 -15.33 16 18 N -0.57 -14.25 5.29 -10.96 -0.06 -14.31 16 19 C -0.30 -8.24 9.68 -14.94 -0.14 -8.39 16 20 H 0.10 3.02 7.16 -52.49 -0.38 2.64 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 23 Si 0.93 21.10 29.55 -169.99 -5.02 16.07 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 27 C 0.08 0.95 2.01 -67.73 -0.14 0.82 16 28 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 29 C -0.15 -1.70 8.52 37.16 0.32 -1.39 16 30 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 35 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 36 H 0.08 0.79 8.10 -51.93 -0.42 0.37 16 37 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.40 2.36 8.46 -40.82 -0.35 2.02 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 42 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 43 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.86 6.34 -51.93 -0.33 1.53 16 45 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.05 0.76 8.05 -51.93 -0.42 0.34 16 47 H 0.09 1.48 5.55 -51.93 -0.29 1.19 16 48 H 0.39 9.39 7.90 -40.82 -0.32 9.06 16 49 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 50 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 51 H 0.06 0.68 6.43 -51.93 -0.33 0.34 16 52 H 0.06 0.52 7.31 -51.93 -0.38 0.14 16 LS Contribution 414.26 15.07 6.24 6.24 Total: -1.00 -34.10 414.26 -8.26 -42.36 By element: Atomic # 1 Polarization: 18.58 SS G_CDS: -9.08 Total: 9.50 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 0.32 Total: 6.84 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.50 Total: -53.92 kcal Atomic # 8 Polarization: -26.88 SS G_CDS: -0.21 Total: -27.09 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -34.10 -8.26 -42.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755714764.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.173 kcal (2) G-P(sol) polarization free energy of solvation -34.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds