Wall clock time and date at job start Wed Apr 1 2020 01:04:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99956 * 2 1 4 4 C 1.52997 * 109.46846 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47068 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47404 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99822 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00042 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00102 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.53422 * 34.89778 * 9 8 6 11 11 C 1.53099 * 109.48506 * 274.80639 * 9 8 6 12 12 C 1.53125 * 109.14901 * 182.39654 * 11 9 8 13 13 C 1.53035 * 109.27847 * 57.65682 * 12 11 9 14 14 N 1.46846 * 109.52525 * 300.81689 * 13 12 11 15 15 C 1.46898 * 111.00250 * 185.84007 * 14 13 12 16 16 C 1.50706 * 109.46984 * 301.27737 * 15 14 13 17 17 O 1.21293 * 119.99953 * 354.32972 * 16 15 14 18 18 N 1.34777 * 119.99429 * 174.33217 * 16 15 14 19 19 C 1.37107 * 119.99455 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00049 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99816 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99914 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99767 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47445 * 89.99808 * 23 21 19 25 25 H 1.48506 * 109.46795 * 209.99814 * 23 21 19 26 26 H 1.48499 * 109.47085 * 329.99507 * 23 21 19 27 27 C 1.46853 * 111.19679 * 61.74002 * 14 13 12 28 28 H 1.09008 * 109.46090 * 58.27761 * 27 14 13 29 29 C 1.52997 * 109.46148 * 178.25184 * 27 14 13 30 30 H 1.09001 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47139 * 299.99564 * 1 2 3 32 32 H 1.09002 * 109.47604 * 59.99859 * 1 2 3 33 33 H 1.08999 * 109.46812 * 60.00092 * 3 2 1 34 34 H 1.09003 * 109.47448 * 300.00362 * 3 2 1 35 35 H 1.08990 * 109.47490 * 60.00520 * 4 3 2 36 36 H 1.09001 * 109.47359 * 299.99491 * 4 3 2 37 37 H 1.08999 * 109.47106 * 59.99452 * 5 4 3 38 38 H 1.09004 * 109.46490 * 300.00157 * 5 4 3 39 39 H 0.97001 * 119.99952 * 359.97438 * 8 6 5 40 40 H 1.08996 * 109.52802 * 62.49710 * 11 9 8 41 41 H 1.08998 * 109.58195 * 302.32767 * 11 9 8 42 42 H 1.09001 * 109.50762 * 297.71288 * 12 11 9 43 43 H 1.08998 * 109.49948 * 177.59316 * 12 11 9 44 44 H 1.08996 * 109.46117 * 180.79862 * 13 12 11 45 45 H 1.09008 * 109.46268 * 60.83488 * 13 12 11 46 46 H 1.08991 * 109.46992 * 61.27596 * 15 14 13 47 47 H 1.09005 * 109.47235 * 181.27570 * 15 14 13 48 48 H 0.96990 * 120.00353 * 359.97438 * 18 16 15 49 49 H 0.97001 * 119.99679 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.47251 * 53.52642 * 29 27 14 51 51 H 1.08997 * 109.46883 * 173.52113 * 29 27 14 52 52 H 1.08993 * 109.47517 * 293.52230 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6601 2.4634 -0.0013 7 8 6.1816 1.3685 -0.0021 8 7 6.4240 3.5737 -0.0004 9 6 7.8844 3.4581 -0.0011 10 1 8.1810 2.5900 -0.5898 11 6 8.3845 3.2958 1.4368 12 6 9.9146 3.2358 1.4327 13 6 10.4683 4.5058 0.7826 14 7 9.9612 4.6150 -0.5912 15 6 10.5805 5.7476 -1.2925 16 6 10.2923 7.0218 -0.5411 17 8 9.5517 7.0053 0.4193 18 7 10.8577 8.1796 -0.9364 19 6 10.5960 9.3388 -0.2526 20 1 9.9366 9.3241 0.6026 21 6 11.1785 10.5326 -0.6604 22 7 11.9805 10.5505 -1.7012 23 14 10.8225 12.1117 0.2718 24 1 11.8223 12.2825 1.3564 25 1 10.9013 13.2652 -0.6603 26 1 9.4607 12.0430 0.8601 27 6 8.4967 4.7216 -0.6098 28 1 8.1884 5.5908 -0.0287 29 6 8.0152 4.8769 -2.0537 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.8567 0.6440 -0.8908 36 1 3.8574 0.6436 0.8892 37 1 3.8364 3.1228 0.8904 38 1 3.8357 3.1238 -0.8896 39 1 6.0068 4.4494 0.0006 40 1 7.9850 2.3740 1.8596 41 1 8.0549 4.1444 2.0362 42 1 10.2432 2.3642 0.8665 43 1 10.2786 3.1632 2.4575 44 1 11.5571 4.4598 0.7653 45 1 10.1508 5.3760 1.3572 46 1 11.6581 5.5947 -1.3487 47 1 10.1706 5.8192 -2.3000 48 1 11.4503 8.1927 -1.7042 49 1 12.3868 11.3840 -1.9861 50 1 8.4201 4.0673 -2.6608 51 1 6.9261 4.8405 -2.0794 52 1 8.3562 5.8334 -2.4496 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755714765.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:18 Heat of formation + Delta-G solvation = -126.330635 kcal Electronic energy + Delta-G solvation = -30598.833708 eV Core-core repulsion = 26404.967431 eV Total energy + Delta-G solvation = -4193.866277 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.33951 -39.29054 -38.24069 -37.39786 -34.75279 -33.89455 -33.85008 -32.98871 -31.37511 -30.87804 -28.31963 -27.35605 -26.56391 -25.80867 -24.60297 -22.98772 -21.80918 -21.30301 -20.34792 -19.83906 -19.06767 -17.87461 -17.36108 -16.66820 -16.55105 -16.21224 -15.90852 -15.52480 -15.29211 -15.05706 -14.85837 -14.54735 -14.44270 -13.96450 -13.85890 -13.75683 -13.54000 -13.12034 -13.03669 -12.53177 -12.37801 -12.26259 -12.05744 -11.97686 -11.84143 -11.69124 -11.53376 -11.35441 -11.32667 -11.19638 -11.14144 -10.73861 -10.57804 -10.48482 -10.43980 -10.31280 -10.08351 -10.02915 -9.79025 -9.50790 -9.25705 -8.94841 -8.05295 -7.44220 -6.50759 -3.92357 2.61767 2.98889 3.09725 3.19817 3.24621 3.52007 3.77287 4.09511 4.31984 4.52618 4.63787 4.76504 4.84768 4.94147 4.95487 5.01246 5.03674 5.08451 5.10167 5.15353 5.18398 5.25434 5.27348 5.35032 5.38456 5.59081 5.69373 5.75704 5.80478 5.82429 5.95087 5.96422 5.99098 6.05133 6.12103 6.15769 6.17395 6.31619 6.33944 6.38299 6.51432 6.60327 6.76963 6.80067 7.34418 7.45544 7.46083 7.52713 7.95490 8.22236 8.50030 9.07332 9.43799 9.93937 10.65591 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.002074 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.151210 B =13495.782795 C =14438.877182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.060 3.940 4 C -0.103 4.103 5 C -0.139 4.139 6 C 0.514 3.486 7 O -0.541 6.541 8 N -0.722 5.722 9 C 0.157 3.843 10 H 0.090 0.910 11 C -0.127 4.127 12 C -0.109 4.109 13 C 0.034 3.966 14 N -0.505 5.505 15 C 0.038 3.962 16 C 0.407 3.593 17 O -0.595 6.595 18 N -0.555 5.555 19 C -0.303 4.303 20 H 0.102 0.898 21 C 0.025 3.975 22 N -0.897 5.897 23 Si 0.929 3.071 24 H -0.278 1.278 25 H -0.283 1.283 26 H -0.270 1.270 27 C 0.060 3.940 28 H 0.087 0.913 29 C -0.146 4.146 30 H 0.085 0.915 31 H 0.041 0.959 32 H 0.041 0.959 33 H 0.049 0.951 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.095 0.905 39 H 0.400 0.600 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.065 0.935 45 H 0.078 0.922 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.393 0.607 49 H 0.273 0.727 50 H 0.059 0.941 51 H 0.054 0.946 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.006 -14.378 0.798 20.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.016 4.016 4 C -0.141 4.141 5 C -0.179 4.179 6 C 0.300 3.700 7 O -0.418 6.418 8 N -0.373 5.373 9 C 0.052 3.948 10 H 0.109 0.891 11 C -0.166 4.166 12 C -0.147 4.147 13 C -0.093 4.093 14 N -0.229 5.229 15 C -0.094 4.094 16 C 0.193 3.807 17 O -0.483 6.483 18 N -0.190 5.190 19 C -0.433 4.433 20 H 0.120 0.880 21 C -0.178 4.178 22 N -0.538 5.538 23 Si 0.756 3.244 24 H -0.204 1.204 25 H -0.208 1.208 26 H -0.195 1.195 27 C -0.048 4.048 28 H 0.105 0.895 29 C -0.203 4.203 30 H 0.104 0.896 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.113 0.887 39 H 0.234 0.766 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.083 0.917 44 H 0.084 0.916 45 H 0.096 0.904 46 H 0.107 0.893 47 H 0.111 0.889 48 H 0.226 0.774 49 H 0.083 0.917 50 H 0.078 0.922 51 H 0.073 0.927 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -14.763 -15.612 1.077 21.514 hybrid contribution -0.316 2.465 0.332 2.507 sum -15.079 -13.147 1.409 20.055 Atomic orbital electron populations 1.22744 0.81016 1.02800 0.99960 1.87892 1.19687 1.28057 1.95413 1.22568 0.94176 0.84679 1.00190 1.21207 0.91994 0.95907 1.05010 1.21559 0.92419 0.99309 1.04654 1.20497 0.89240 0.84336 0.75900 1.90712 1.75084 1.26559 1.49396 1.46080 1.07274 1.08896 1.75008 1.20927 0.78057 0.99259 0.96549 0.89150 1.21914 0.96328 1.01765 0.96559 1.21488 0.94588 0.98476 1.00185 1.22370 0.98964 0.98534 0.89457 1.62364 1.04822 1.39109 1.16583 1.22121 1.00672 0.88128 0.98455 1.21084 0.85783 0.85774 0.88087 1.90389 1.41298 1.85889 1.30674 1.42063 1.41600 1.06707 1.28677 1.19699 1.27126 0.84546 1.11918 0.87992 1.25286 0.96217 0.99671 0.96602 1.69610 1.30558 1.28575 1.25009 0.85872 0.79027 0.80544 0.78927 1.20352 1.20847 1.19470 1.21965 0.88680 0.97241 0.96954 0.89534 1.21894 1.00330 1.02036 0.96063 0.89613 0.94073 0.94067 0.93233 0.93218 0.90245 0.90288 0.88717 0.88708 0.76594 0.91966 0.91842 0.91653 0.91679 0.91611 0.90406 0.89325 0.88873 0.77374 0.91734 0.92215 0.92691 0.92261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.82 10.70 -35.23 -0.38 -4.20 16 3 C 0.06 0.47 5.94 37.16 0.22 0.69 16 4 C -0.10 -0.95 4.87 -26.73 -0.13 -1.08 16 5 C -0.14 -1.10 5.70 -27.88 -0.16 -1.26 16 6 C 0.51 6.10 7.80 -10.99 -0.09 6.01 16 7 O -0.54 -8.55 15.65 5.56 0.09 -8.47 16 8 N -0.72 -8.29 4.30 -53.74 -0.23 -8.52 16 9 C 0.16 2.17 2.05 -67.86 -0.14 2.03 16 10 H 0.09 1.41 7.58 -51.93 -0.39 1.02 16 11 C -0.13 -1.78 5.58 -26.62 -0.15 -1.93 16 12 C -0.11 -1.51 6.09 -26.65 -0.16 -1.68 16 13 C 0.03 0.56 4.98 -3.84 -0.02 0.54 16 14 N -0.51 -8.10 4.69 -228.12 -1.07 -9.17 16 15 C 0.04 0.65 5.48 -4.97 -0.03 0.62 16 16 C 0.41 8.85 7.18 -10.98 -0.08 8.77 16 17 O -0.59 -14.33 11.22 5.55 0.06 -14.27 16 18 N -0.56 -13.36 5.29 -10.96 -0.06 -13.42 16 19 C -0.30 -8.09 9.68 -14.93 -0.14 -8.24 16 20 H 0.10 2.86 7.16 -52.49 -0.38 2.48 16 21 C 0.02 0.64 5.50 -17.47 -0.10 0.54 16 22 N -0.90 -23.67 13.05 55.50 0.72 -22.95 16 23 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 24 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 25 H -0.28 -6.10 7.11 56.52 0.40 -5.70 16 26 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 27 C 0.06 0.92 1.64 -67.72 -0.11 0.81 16 28 H 0.09 1.58 5.76 -51.92 -0.30 1.28 16 29 C -0.15 -1.99 8.48 37.16 0.32 -1.67 16 30 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.04 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 36 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.40 3.86 8.45 -40.82 -0.35 3.51 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.07 1.03 8.12 -51.93 -0.42 0.61 16 45 H 0.08 1.52 5.61 -51.92 -0.29 1.23 16 46 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 47 H 0.09 1.46 6.04 -51.93 -0.31 1.14 16 48 H 0.39 9.15 7.90 -40.82 -0.32 8.83 16 49 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 50 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 51 H 0.05 0.65 7.33 -51.93 -0.38 0.27 16 52 H 0.06 0.87 6.60 -51.93 -0.34 0.53 16 LS Contribution 408.65 15.07 6.16 6.16 Total: -1.00 -31.39 408.65 -8.34 -39.73 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: -8.96 Total: 14.25 kcal Atomic # 6 Polarization: 5.13 SS G_CDS: 0.35 Total: 5.47 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: -0.64 Total: -54.07 kcal Atomic # 8 Polarization: -26.71 SS G_CDS: -0.23 Total: -26.93 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -31.39 -8.34 -39.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755714765.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.604 kcal (2) G-P(sol) polarization free energy of solvation -31.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds