Wall clock time and date at job start Wed Apr 1 2020 01:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99956 * 2 1 4 4 C 1.52997 * 109.46846 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47068 * 180.02562 * 4 3 2 6 6 C 1.50699 * 109.47404 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99822 * 359.97438 * 6 5 4 8 8 N 1.34770 * 120.00042 * 180.02562 * 6 5 4 9 9 C 1.46504 * 120.00102 * 179.97438 * 8 6 5 10 10 H 1.08993 * 109.53422 * 34.89778 * 9 8 6 11 11 C 1.53099 * 109.48506 * 274.80639 * 9 8 6 12 12 C 1.53125 * 109.14901 * 182.39654 * 11 9 8 13 13 C 1.53035 * 109.27847 * 57.65682 * 12 11 9 14 14 N 1.46846 * 109.52525 * 300.81689 * 13 12 11 15 15 C 1.46898 * 111.00250 * 185.84007 * 14 13 12 16 16 C 1.50706 * 109.46984 * 301.27737 * 15 14 13 17 17 O 1.21293 * 119.99953 * 354.32972 * 16 15 14 18 18 N 1.34777 * 119.99429 * 174.33217 * 16 15 14 19 19 C 1.37107 * 119.99455 * 180.02562 * 18 16 15 20 20 H 1.07999 * 120.00049 * 359.97438 * 19 18 16 21 21 C 1.38948 * 119.99816 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99914 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99767 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47445 * 89.99808 * 23 21 19 25 25 H 1.48506 * 109.46795 * 209.99814 * 23 21 19 26 26 H 1.48499 * 109.47085 * 329.99507 * 23 21 19 27 27 C 1.46853 * 111.19679 * 61.74002 * 14 13 12 28 28 H 1.09008 * 109.46090 * 58.27761 * 27 14 13 29 29 C 1.52997 * 109.46148 * 178.25184 * 27 14 13 30 30 H 1.09001 * 109.47405 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47139 * 299.99564 * 1 2 3 32 32 H 1.09002 * 109.47604 * 59.99859 * 1 2 3 33 33 H 1.08999 * 109.46812 * 60.00092 * 3 2 1 34 34 H 1.09003 * 109.47448 * 300.00362 * 3 2 1 35 35 H 1.08990 * 109.47490 * 60.00520 * 4 3 2 36 36 H 1.09001 * 109.47359 * 299.99491 * 4 3 2 37 37 H 1.08999 * 109.47106 * 59.99452 * 5 4 3 38 38 H 1.09004 * 109.46490 * 300.00157 * 5 4 3 39 39 H 0.97001 * 119.99952 * 359.97438 * 8 6 5 40 40 H 1.08996 * 109.52802 * 62.49710 * 11 9 8 41 41 H 1.08998 * 109.58195 * 302.32767 * 11 9 8 42 42 H 1.09001 * 109.50762 * 297.71288 * 12 11 9 43 43 H 1.08998 * 109.49948 * 177.59316 * 12 11 9 44 44 H 1.08996 * 109.46117 * 180.79862 * 13 12 11 45 45 H 1.09008 * 109.46268 * 60.83488 * 13 12 11 46 46 H 1.08991 * 109.46992 * 61.27596 * 15 14 13 47 47 H 1.09005 * 109.47235 * 181.27570 * 15 14 13 48 48 H 0.96990 * 120.00353 * 359.97438 * 18 16 15 49 49 H 0.97001 * 119.99679 * 179.97438 * 22 21 19 50 50 H 1.08997 * 109.47251 * 53.52642 * 29 27 14 51 51 H 1.08997 * 109.46883 * 173.52113 * 29 27 14 52 52 H 1.08993 * 109.47517 * 293.52230 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 6 4.1578 2.5824 0.0000 6 6 5.6601 2.4634 -0.0013 7 8 6.1816 1.3685 -0.0021 8 7 6.4240 3.5737 -0.0004 9 6 7.8844 3.4581 -0.0011 10 1 8.1810 2.5900 -0.5898 11 6 8.3845 3.2958 1.4368 12 6 9.9146 3.2358 1.4327 13 6 10.4683 4.5058 0.7826 14 7 9.9612 4.6150 -0.5912 15 6 10.5805 5.7476 -1.2925 16 6 10.2923 7.0218 -0.5411 17 8 9.5517 7.0053 0.4193 18 7 10.8577 8.1796 -0.9364 19 6 10.5960 9.3388 -0.2526 20 1 9.9366 9.3241 0.6026 21 6 11.1785 10.5326 -0.6604 22 7 11.9805 10.5505 -1.7012 23 14 10.8225 12.1117 0.2718 24 1 11.8223 12.2825 1.3564 25 1 10.9013 13.2652 -0.6603 26 1 9.4607 12.0430 0.8601 27 6 8.4967 4.7216 -0.6098 28 1 8.1884 5.5908 -0.0287 29 6 8.0152 4.8769 -2.0537 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.6886 1.8463 0.8900 34 1 1.6885 1.8465 -0.8900 35 1 3.8567 0.6440 -0.8908 36 1 3.8574 0.6436 0.8892 37 1 3.8364 3.1228 0.8904 38 1 3.8357 3.1238 -0.8896 39 1 6.0068 4.4494 0.0006 40 1 7.9850 2.3740 1.8596 41 1 8.0549 4.1444 2.0362 42 1 10.2432 2.3642 0.8665 43 1 10.2786 3.1632 2.4575 44 1 11.5571 4.4598 0.7653 45 1 10.1508 5.3760 1.3572 46 1 11.6581 5.5947 -1.3487 47 1 10.1706 5.8192 -2.3000 48 1 11.4503 8.1927 -1.7042 49 1 12.3868 11.3840 -1.9861 50 1 8.4201 4.0673 -2.6608 51 1 6.9261 4.8405 -2.0794 52 1 8.3562 5.8334 -2.4496 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755714765.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:12 Heat of formation + Delta-G solvation = -149.807103 kcal Electronic energy + Delta-G solvation = -30599.851724 eV Core-core repulsion = 26404.967431 eV Total energy + Delta-G solvation = -4194.884293 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.55860 -40.57788 -39.05552 -38.72293 -36.19249 -35.50237 -34.62869 -34.22143 -33.27741 -32.05542 -29.20112 -28.60924 -27.67409 -26.57430 -26.30233 -24.10850 -22.74606 -22.49210 -21.35881 -21.23673 -20.62934 -19.71551 -18.30615 -17.67559 -17.45064 -17.29727 -17.04714 -16.58434 -16.56889 -16.25584 -16.04703 -15.81411 -15.77366 -15.49429 -15.08954 -14.88056 -14.76634 -14.35679 -14.31914 -13.74934 -13.51537 -13.23341 -13.12477 -12.99251 -12.98816 -12.93088 -12.82937 -12.61070 -12.54928 -12.42704 -12.15578 -11.98928 -11.95885 -11.87053 -11.81817 -11.75489 -11.38784 -11.22299 -10.93620 -10.83047 -10.59594 -10.01477 -9.97955 -8.99176 -8.45541 -5.95237 1.35733 1.40672 1.52303 1.68653 2.01901 2.09176 2.28441 2.87234 3.08487 3.20577 3.26473 3.67008 3.81630 3.84594 4.01080 4.03973 4.13871 4.18260 4.33243 4.39896 4.42348 4.46425 4.48915 4.50631 4.53599 4.56945 4.59678 4.61097 4.70054 4.73774 4.79117 4.82590 4.87445 4.90394 5.00171 5.06338 5.13688 5.16368 5.19046 5.25911 5.29836 5.39243 5.45679 5.52512 5.91922 6.07259 6.14672 6.26878 6.58025 6.60396 7.12106 7.29415 7.56201 8.10207 8.69614 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016180 B = 0.002074 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1730.151210 B =13495.782795 C =14438.877182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.424 6.424 3 C 0.061 3.939 4 C -0.100 4.100 5 C -0.129 4.129 6 C 0.512 3.488 7 O -0.584 6.584 8 N -0.715 5.715 9 C 0.166 3.834 10 H 0.077 0.923 11 C -0.123 4.123 12 C -0.103 4.103 13 C 0.037 3.963 14 N -0.499 5.499 15 C 0.046 3.954 16 C 0.412 3.588 17 O -0.617 6.617 18 N -0.570 5.570 19 C -0.330 4.330 20 H 0.079 0.921 21 C -0.012 4.012 22 N -0.918 5.918 23 Si 0.989 3.011 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.272 1.272 27 C 0.065 3.935 28 H 0.057 0.943 29 C -0.141 4.141 30 H 0.092 0.908 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.067 0.933 35 H 0.058 0.942 36 H 0.057 0.943 37 H 0.120 0.880 38 H 0.123 0.877 39 H 0.411 0.589 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.071 0.929 45 H 0.043 0.957 46 H 0.107 0.893 47 H 0.113 0.887 48 H 0.395 0.605 49 H 0.277 0.723 50 H 0.066 0.934 51 H 0.073 0.927 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.267 -14.302 0.450 21.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.344 6.344 3 C -0.015 4.015 4 C -0.138 4.138 5 C -0.168 4.168 6 C 0.300 3.700 7 O -0.464 6.464 8 N -0.366 5.366 9 C 0.061 3.939 10 H 0.095 0.905 11 C -0.161 4.161 12 C -0.141 4.141 13 C -0.091 4.091 14 N -0.222 5.222 15 C -0.086 4.086 16 C 0.199 3.801 17 O -0.505 6.505 18 N -0.206 5.206 19 C -0.460 4.460 20 H 0.097 0.903 21 C -0.212 4.212 22 N -0.559 5.559 23 Si 0.814 3.186 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.197 1.197 27 C -0.044 4.044 28 H 0.075 0.925 29 C -0.198 4.198 30 H 0.110 0.890 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.075 0.925 37 H 0.139 0.861 38 H 0.141 0.859 39 H 0.247 0.753 40 H 0.080 0.920 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.090 0.910 45 H 0.061 0.939 46 H 0.125 0.875 47 H 0.131 0.869 48 H 0.229 0.771 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.092 0.908 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -16.044 -15.532 0.725 22.343 hybrid contribution 0.036 2.335 0.472 2.382 sum -16.008 -13.197 1.197 20.781 Atomic orbital electron populations 1.22917 0.79405 1.03698 1.01018 1.87846 1.21594 1.29322 1.95669 1.22607 0.92775 0.84358 1.01746 1.21136 0.93470 0.96238 1.02965 1.21563 0.88961 0.99079 1.07208 1.21200 0.90822 0.83434 0.74507 1.90697 1.76158 1.28159 1.51352 1.46002 1.06287 1.09638 1.74680 1.20672 0.79519 0.97755 0.95980 0.90456 1.21863 0.96486 1.01222 0.96564 1.21457 0.94383 0.97367 1.00892 1.22323 0.99427 0.98241 0.89131 1.62458 1.05439 1.37887 1.16392 1.22197 1.02082 0.85617 0.98654 1.22022 0.84043 0.86562 0.87452 1.90399 1.41872 1.86516 1.31743 1.42131 1.42627 1.06827 1.29058 1.19637 1.27933 0.86232 1.12226 0.90260 1.26003 0.95826 1.02061 0.97327 1.69672 1.31012 1.29439 1.25799 0.84977 0.78595 0.77166 0.77910 1.19909 1.19720 1.19712 1.21908 0.88146 0.96644 0.97731 0.92476 1.21857 1.01630 1.01578 0.94743 0.88966 0.92998 0.92952 0.91642 0.91525 0.92290 0.92451 0.86142 0.85883 0.75280 0.92005 0.92754 0.90917 0.90329 0.91015 0.93855 0.87531 0.86939 0.77131 0.91370 0.91479 0.90796 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 113.37 1.25 1.53 16 2 O -0.42 -7.85 10.70 -148.98 -1.59 -9.44 16 3 C 0.06 0.84 5.94 71.98 0.43 1.27 16 4 C -0.10 -1.75 4.87 30.60 0.15 -1.60 16 5 C -0.13 -1.74 5.70 29.85 0.17 -1.57 16 6 C 0.51 11.54 7.80 87.66 0.68 12.22 16 7 O -0.58 -18.40 15.65 -3.03 -0.05 -18.45 16 8 N -0.71 -15.51 4.30 -442.33 -1.90 -17.41 16 9 C 0.17 4.49 2.05 45.03 0.09 4.58 16 10 H 0.08 2.36 7.58 -2.39 -0.02 2.34 16 11 C -0.12 -3.38 5.58 30.67 0.17 -3.21 16 12 C -0.10 -2.77 6.09 30.65 0.19 -2.58 16 13 C 0.04 1.18 4.98 86.33 0.43 1.61 16 14 N -0.50 -15.59 4.69 -875.64 -4.11 -19.70 16 15 C 0.05 1.53 5.48 85.56 0.47 2.00 16 16 C 0.41 18.08 7.18 87.66 0.63 18.71 16 17 O -0.62 -30.41 11.22 -3.07 -0.03 -30.44 16 18 N -0.57 -27.82 5.29 -306.97 -1.62 -29.45 16 19 C -0.33 -17.99 9.68 84.04 0.81 -17.18 16 20 H 0.08 4.59 7.16 -2.91 -0.02 4.57 16 21 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 22 N -0.92 -48.42 13.05 21.66 0.28 -48.13 16 23 Si 0.99 41.80 29.55 68.60 2.03 43.83 16 24 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 25 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 26 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 27 C 0.06 1.92 1.64 44.93 0.07 2.00 16 28 H 0.06 2.10 5.76 -2.38 -0.01 2.08 16 29 C -0.14 -3.63 8.48 71.98 0.61 -3.02 16 30 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.05 0.44 8.14 -2.39 -0.02 0.43 16 32 H 0.05 0.44 8.14 -2.39 -0.02 0.43 16 33 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.06 1.26 8.10 -2.39 -0.02 1.24 16 36 H 0.06 1.23 8.10 -2.39 -0.02 1.21 16 37 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 38 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.41 7.20 8.45 -92.71 -0.78 6.42 16 40 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 43 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 44 H 0.07 2.19 8.12 -2.39 -0.02 2.17 16 45 H 0.04 1.72 5.61 -2.38 -0.01 1.71 16 46 H 0.11 3.20 8.14 -2.39 -0.02 3.18 16 47 H 0.11 3.34 6.04 -2.38 -0.01 3.33 16 48 H 0.40 18.60 7.90 -92.72 -0.73 17.86 16 49 H 0.28 13.73 8.31 -92.71 -0.77 12.96 16 50 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 51 H 0.07 1.60 7.33 -2.39 -0.02 1.59 16 52 H 0.05 1.34 6.60 -2.39 -0.02 1.33 16 Total: -1.00 -69.58 408.65 -0.97 -70.55 By element: Atomic # 1 Polarization: 44.65 SS G_CDS: -0.59 Total: 44.06 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 6.62 Total: 14.59 kcal Atomic # 7 Polarization: -107.33 SS G_CDS: -7.35 Total: -114.68 kcal Atomic # 8 Polarization: -56.66 SS G_CDS: -1.68 Total: -58.34 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.83 kcal Total: -69.58 -0.97 -70.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755714765.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.260 kcal (2) G-P(sol) polarization free energy of solvation -69.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds