Wall clock time and date at job start Wed Apr 1 2020 01:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42901 * 113.99389 * 2 1 4 4 C 1.52998 * 109.46906 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47295 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47413 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99978 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00459 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00527 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.50155 * 324.92269 * 9 8 6 11 11 C 1.53130 * 109.50316 * 84.99411 * 9 8 6 12 12 C 1.53117 * 109.15488 * 62.29014 * 11 9 8 13 13 C 1.53037 * 109.28335 * 57.65527 * 12 11 9 14 14 N 1.46848 * 109.52226 * 300.81961 * 13 12 11 15 15 C 1.46894 * 110.99972 * 185.83763 * 14 13 12 16 16 C 1.50703 * 109.47312 * 75.57194 * 15 14 13 17 17 O 1.21296 * 119.99894 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99964 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99969 * 180.02562 * 18 16 15 20 20 H 1.08008 * 119.99835 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00095 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99878 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00161 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47066 * 90.00066 * 23 21 19 25 25 H 1.48495 * 109.47378 * 210.00386 * 23 21 19 26 26 H 1.48498 * 109.47071 * 330.00312 * 23 21 19 27 27 C 1.46847 * 111.19900 * 61.73428 * 14 13 12 28 28 H 1.09000 * 109.45588 * 58.28061 * 27 14 13 29 29 C 1.53001 * 109.46208 * 178.24011 * 27 14 13 30 30 H 1.08997 * 109.47215 * 299.99552 * 1 2 3 31 31 H 1.08995 * 109.47334 * 59.99946 * 1 2 3 32 32 H 1.08998 * 109.46384 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47364 * 60.00553 * 3 2 1 34 34 H 1.09001 * 109.47623 * 300.00223 * 3 2 1 35 35 H 1.08996 * 109.47085 * 60.00453 * 4 3 2 36 36 H 1.09001 * 109.47249 * 300.00559 * 4 3 2 37 37 H 1.08996 * 109.46914 * 60.00067 * 5 4 3 38 38 H 1.09001 * 109.47199 * 300.00308 * 5 4 3 39 39 H 0.97002 * 119.99922 * 359.97438 * 8 6 5 40 40 H 1.09001 * 109.52417 * 302.38507 * 11 9 8 41 41 H 1.08995 * 109.57350 * 182.22158 * 11 9 8 42 42 H 1.08999 * 109.50475 * 297.70831 * 12 11 9 43 43 H 1.09012 * 109.53453 * 177.61318 * 12 11 9 44 44 H 1.08998 * 109.46643 * 180.79874 * 13 12 11 45 45 H 1.09005 * 109.46131 * 60.83381 * 13 12 11 46 46 H 1.09002 * 109.47153 * 315.56835 * 15 14 13 47 47 H 1.09000 * 109.46874 * 195.56883 * 15 14 13 48 48 H 0.96998 * 120.00548 * 0.02562 * 18 16 15 49 49 H 0.97002 * 120.00140 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.46620 * 52.22044 * 29 27 14 51 51 H 1.08997 * 109.47045 * 172.21313 * 29 27 14 52 52 H 1.08995 * 109.47435 * 292.22129 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5826 0.0013 6 6 5.6599 2.4637 0.0013 7 8 6.1816 1.3688 0.0013 8 7 6.4238 3.5740 0.0023 9 6 7.8842 3.4585 0.0029 10 1 8.1804 2.5912 0.5930 11 6 8.3846 3.2936 -1.4349 12 6 8.0159 4.5418 -2.2415 13 6 8.6245 5.7752 -1.5703 14 7 8.1144 5.8890 -0.1980 15 6 8.5687 7.1364 0.4307 16 6 7.7771 8.2942 -0.1206 17 8 6.9191 8.0994 -0.9556 18 7 8.0231 9.5462 0.3133 19 6 7.3026 10.5995 -0.1878 20 1 6.5381 10.4258 -0.9307 21 6 7.5567 11.8903 0.2592 22 7 6.8657 12.8998 -0.2209 23 14 8.8794 12.1907 1.5435 24 1 10.1790 12.4353 0.8677 25 1 8.5157 13.3758 2.3609 26 1 8.9952 10.9996 2.4227 27 6 8.4966 4.7232 0.6090 28 1 9.5826 4.6308 0.6218 29 6 7.9837 4.9030 2.0392 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8901 34 1 1.6885 1.8465 -0.8899 35 1 3.8574 0.6439 -0.8891 36 1 3.8567 0.6440 0.8908 37 1 3.8356 3.1232 0.8913 38 1 3.8364 3.1238 -0.8887 39 1 6.0066 4.4498 0.0027 40 1 7.9172 2.4178 -1.8851 41 1 9.4673 3.1680 -1.4326 42 1 6.9314 4.6448 -2.2773 43 1 8.4063 4.4492 -3.2551 44 1 8.3520 6.6672 -2.1343 45 1 9.7099 5.6777 -1.5474 46 1 9.6273 7.2859 0.2180 47 1 8.4198 7.0751 1.5088 48 1 8.7100 9.7022 0.9802 49 1 7.0432 13.8010 0.0909 50 1 6.9186 5.1336 2.0169 51 1 8.1445 3.9830 2.6012 52 1 8.5225 5.7204 2.5184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755714766.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:30 Heat of formation + Delta-G solvation = -118.888723 kcal Electronic energy + Delta-G solvation = -30722.997475 eV Core-core repulsion = 26529.453904 eV Total energy + Delta-G solvation = -4193.543571 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.47456 -39.09372 -38.19493 -37.77284 -34.63888 -33.85001 -33.79033 -33.17359 -31.67078 -31.20735 -28.30864 -27.64604 -26.80377 -25.82815 -24.52880 -23.00958 -22.11967 -21.51072 -20.42673 -19.38992 -19.14601 -18.32127 -17.39868 -16.62745 -16.52453 -16.35498 -15.65241 -15.50354 -15.39913 -15.15141 -14.99767 -14.89002 -14.49228 -14.04131 -13.88873 -13.62339 -13.50161 -13.18573 -12.97849 -12.86381 -12.49217 -12.32673 -12.26652 -12.08783 -12.01269 -11.97794 -11.87694 -11.69794 -11.39739 -11.28536 -11.15866 -11.12691 -10.81413 -10.62254 -10.52648 -10.23493 -9.99746 -9.96119 -9.83397 -9.56400 -8.99242 -8.62998 -8.19802 -8.02064 -6.33127 -3.84420 2.65221 2.99759 3.04128 3.06764 3.12842 3.58419 3.72836 3.81669 4.07961 4.53811 4.62756 4.67589 4.71897 4.82995 4.84874 4.98703 5.01701 5.03986 5.09762 5.15544 5.18248 5.19764 5.22743 5.25569 5.31479 5.34044 5.42489 5.45947 5.55154 5.61634 5.64227 5.72346 5.82935 5.88348 5.89608 5.91473 5.97730 6.01202 6.04055 6.13648 6.29805 6.39130 6.56268 6.86257 7.10339 7.25075 7.56660 7.62093 8.12576 8.27346 8.58685 8.93727 9.40965 9.82510 10.80048 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.002355 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.898240 B =11884.977239 C =13142.048830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.392 6.392 3 C 0.059 3.941 4 C -0.101 4.101 5 C -0.140 4.140 6 C 0.514 3.486 7 O -0.551 6.551 8 N -0.709 5.709 9 C 0.160 3.840 10 H 0.088 0.912 11 C -0.133 4.133 12 C -0.112 4.112 13 C 0.058 3.942 14 N -0.510 5.510 15 C 0.036 3.964 16 C 0.454 3.546 17 O -0.558 6.558 18 N -0.594 5.594 19 C -0.303 4.303 20 H 0.119 0.881 21 C 0.040 3.960 22 N -0.882 5.882 23 Si 0.879 3.121 24 H -0.272 1.272 25 H -0.277 1.277 26 H -0.270 1.270 27 C 0.071 3.929 28 H 0.052 0.948 29 C -0.149 4.149 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.085 0.915 33 H 0.050 0.950 34 H 0.051 0.949 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.095 0.905 38 H 0.096 0.904 39 H 0.414 0.586 40 H 0.068 0.932 41 H 0.066 0.934 42 H 0.073 0.927 43 H 0.064 0.936 44 H 0.092 0.908 45 H 0.025 0.975 46 H 0.050 0.950 47 H 0.095 0.905 48 H 0.369 0.631 49 H 0.273 0.727 50 H 0.068 0.932 51 H 0.060 0.940 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.601 -20.626 3.403 20.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.311 6.311 3 C -0.017 4.017 4 C -0.139 4.139 5 C -0.180 4.180 6 C 0.300 3.700 7 O -0.429 6.429 8 N -0.361 5.361 9 C 0.054 3.946 10 H 0.106 0.894 11 C -0.172 4.172 12 C -0.150 4.150 13 C -0.069 4.069 14 N -0.235 5.235 15 C -0.095 4.095 16 C 0.240 3.760 17 O -0.439 6.439 18 N -0.234 5.234 19 C -0.431 4.431 20 H 0.137 0.863 21 C -0.162 4.162 22 N -0.522 5.522 23 Si 0.706 3.294 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.038 4.038 28 H 0.070 0.930 29 C -0.207 4.207 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.103 0.897 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.251 0.749 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.082 0.918 44 H 0.110 0.890 45 H 0.044 0.956 46 H 0.068 0.932 47 H 0.113 0.887 48 H 0.202 0.798 49 H 0.083 0.917 50 H 0.087 0.913 51 H 0.079 0.921 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -2.256 -21.444 2.803 21.744 hybrid contribution 1.539 1.303 1.074 2.285 sum -0.717 -20.141 3.878 20.523 Atomic orbital electron populations 1.22742 0.81024 1.02723 1.00037 1.87881 1.19690 1.28135 1.95438 1.22581 0.94170 0.84612 1.00349 1.21191 0.92026 0.95930 1.04773 1.21547 0.92368 0.99162 1.04937 1.20543 0.89401 0.84298 0.75749 1.90687 1.75168 1.26757 1.50261 1.46001 1.06423 1.09570 1.74140 1.20927 0.80295 0.97006 0.96361 0.89365 1.22000 1.00733 0.98796 0.95642 1.21517 1.02167 0.93263 0.98016 1.22161 0.95639 0.99892 0.89232 1.61447 1.60290 0.99920 1.01829 1.22021 0.97284 0.90097 1.00145 1.19662 0.87111 0.83079 0.86169 1.90546 1.34916 1.83986 1.34457 1.42226 1.35382 1.06638 1.39112 1.19404 1.17220 0.83971 1.22554 0.86313 1.25035 0.97838 0.95332 0.98033 1.69619 1.40071 0.99508 1.43044 0.86683 0.82290 0.78671 0.81780 1.19723 1.20226 1.19539 1.21915 0.97653 0.90535 0.93686 0.93021 1.21939 1.02684 1.01648 0.94402 0.94049 0.94027 0.89676 0.93170 0.93109 0.90399 0.90431 0.88658 0.88538 0.74949 0.91339 0.91563 0.90853 0.91761 0.88977 0.95633 0.93185 0.88714 0.79836 0.91651 0.91259 0.92115 0.92123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.33 16 2 O -0.39 -4.06 10.70 -35.23 -0.38 -4.43 16 3 C 0.06 0.51 5.94 37.16 0.22 0.73 16 4 C -0.10 -0.98 4.87 -26.73 -0.13 -1.11 16 5 C -0.14 -1.24 5.70 -27.89 -0.16 -1.40 16 6 C 0.51 6.02 7.79 -10.99 -0.09 5.93 16 7 O -0.55 -8.26 15.65 5.55 0.09 -8.17 16 8 N -0.71 -7.89 3.82 -53.73 -0.21 -8.10 16 9 C 0.16 1.78 2.25 -67.85 -0.15 1.63 16 10 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 11 C -0.13 -1.48 5.67 -26.60 -0.15 -1.63 16 12 C -0.11 -1.36 5.93 -26.65 -0.16 -1.52 16 13 C 0.06 0.81 5.11 -3.83 -0.02 0.79 16 14 N -0.51 -7.05 3.53 -228.13 -0.81 -7.85 16 15 C 0.04 0.54 5.31 -4.98 -0.03 0.52 16 16 C 0.45 9.63 7.49 -10.99 -0.08 9.55 16 17 O -0.56 -13.88 14.74 5.54 0.08 -13.80 16 18 N -0.59 -13.51 5.09 -10.96 -0.06 -13.57 16 19 C -0.30 -8.29 10.16 -14.93 -0.15 -8.44 16 20 H 0.12 3.73 7.39 -52.48 -0.39 3.34 16 21 C 0.04 1.08 5.50 -17.47 -0.10 0.99 16 22 N -0.88 -25.32 13.96 55.50 0.77 -24.55 16 23 Si 0.88 18.94 27.74 -169.99 -4.71 14.22 16 24 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 25 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 26 H -0.27 -5.27 6.52 56.52 0.37 -4.90 16 27 C 0.07 0.79 2.15 -67.73 -0.15 0.64 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 C -0.15 -1.52 8.30 37.16 0.31 -1.21 16 30 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 36 H 0.08 0.84 8.10 -51.93 -0.42 0.42 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 38 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.41 4.76 7.94 -40.82 -0.32 4.43 16 40 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 42 H 0.07 0.99 7.73 -51.93 -0.40 0.58 16 43 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 44 H 0.09 1.58 6.69 -51.93 -0.35 1.23 16 45 H 0.03 0.33 8.14 -51.93 -0.42 -0.10 16 46 H 0.05 0.69 8.00 -51.93 -0.42 0.28 16 47 H 0.09 1.27 5.42 -51.93 -0.28 0.99 16 48 H 0.37 7.41 5.76 -40.82 -0.24 7.18 16 49 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 50 H 0.07 0.76 7.66 -51.93 -0.40 0.37 16 51 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 52 H 0.06 0.59 6.38 -51.93 -0.33 0.26 16 LS Contribution 410.05 15.07 6.18 6.18 Total: -1.00 -32.97 410.05 -7.77 -40.74 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: -9.02 Total: 12.52 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 0.28 Total: 6.80 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.29 Total: -54.06 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.21 Total: -26.40 kcal Atomic # 14 Polarization: 18.94 SS G_CDS: -4.71 Total: 14.22 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.97 -7.77 -40.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755714766.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.145 kcal (2) G-P(sol) polarization free energy of solvation -32.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.773 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds