Wall clock time and date at job start Wed Apr 1 2020 01:04:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42901 * 113.99389 * 2 1 4 4 C 1.52998 * 109.46906 * 179.97438 * 3 2 1 5 5 C 1.53002 * 109.47295 * 180.02562 * 4 3 2 6 6 C 1.50694 * 109.47413 * 180.02562 * 5 4 3 7 7 O 1.21286 * 119.99978 * 359.97438 * 6 5 4 8 8 N 1.34772 * 120.00459 * 180.02562 * 6 5 4 9 9 C 1.46500 * 120.00527 * 179.97438 * 8 6 5 10 10 H 1.09003 * 109.50155 * 324.92269 * 9 8 6 11 11 C 1.53130 * 109.50316 * 84.99411 * 9 8 6 12 12 C 1.53117 * 109.15488 * 62.29014 * 11 9 8 13 13 C 1.53037 * 109.28335 * 57.65527 * 12 11 9 14 14 N 1.46848 * 109.52226 * 300.81961 * 13 12 11 15 15 C 1.46894 * 110.99972 * 185.83763 * 14 13 12 16 16 C 1.50703 * 109.47312 * 75.57194 * 15 14 13 17 17 O 1.21296 * 119.99894 * 359.97438 * 16 15 14 18 18 N 1.34773 * 119.99964 * 180.02562 * 16 15 14 19 19 C 1.37100 * 119.99969 * 180.02562 * 18 16 15 20 20 H 1.08008 * 119.99835 * 359.97438 * 19 18 16 21 21 C 1.38948 * 120.00095 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99878 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 120.00161 * 359.97438 * 21 19 18 24 24 H 1.48504 * 109.47066 * 90.00066 * 23 21 19 25 25 H 1.48495 * 109.47378 * 210.00386 * 23 21 19 26 26 H 1.48498 * 109.47071 * 330.00312 * 23 21 19 27 27 C 1.46847 * 111.19900 * 61.73428 * 14 13 12 28 28 H 1.09000 * 109.45588 * 58.28061 * 27 14 13 29 29 C 1.53001 * 109.46208 * 178.24011 * 27 14 13 30 30 H 1.08997 * 109.47215 * 299.99552 * 1 2 3 31 31 H 1.08995 * 109.47334 * 59.99946 * 1 2 3 32 32 H 1.08998 * 109.46384 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.47364 * 60.00553 * 3 2 1 34 34 H 1.09001 * 109.47623 * 300.00223 * 3 2 1 35 35 H 1.08996 * 109.47085 * 60.00453 * 4 3 2 36 36 H 1.09001 * 109.47249 * 300.00559 * 4 3 2 37 37 H 1.08996 * 109.46914 * 60.00067 * 5 4 3 38 38 H 1.09001 * 109.47199 * 300.00308 * 5 4 3 39 39 H 0.97002 * 119.99922 * 359.97438 * 8 6 5 40 40 H 1.09001 * 109.52417 * 302.38507 * 11 9 8 41 41 H 1.08995 * 109.57350 * 182.22158 * 11 9 8 42 42 H 1.08999 * 109.50475 * 297.70831 * 12 11 9 43 43 H 1.09012 * 109.53453 * 177.61318 * 12 11 9 44 44 H 1.08998 * 109.46643 * 180.79874 * 13 12 11 45 45 H 1.09005 * 109.46131 * 60.83381 * 13 12 11 46 46 H 1.09002 * 109.47153 * 315.56835 * 15 14 13 47 47 H 1.09000 * 109.46874 * 195.56883 * 15 14 13 48 48 H 0.96998 * 120.00548 * 0.02562 * 18 16 15 49 49 H 0.97002 * 120.00140 * 180.02562 * 22 21 19 50 50 H 1.09002 * 109.46620 * 52.22044 * 29 27 14 51 51 H 1.08997 * 109.47045 * 172.21313 * 29 27 14 52 52 H 1.08995 * 109.47435 * 292.22129 * 29 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 0.0006 5 6 4.1577 2.5826 0.0013 6 6 5.6599 2.4637 0.0013 7 8 6.1816 1.3688 0.0013 8 7 6.4238 3.5740 0.0023 9 6 7.8842 3.4585 0.0029 10 1 8.1804 2.5912 0.5930 11 6 8.3846 3.2936 -1.4349 12 6 8.0159 4.5418 -2.2415 13 6 8.6245 5.7752 -1.5703 14 7 8.1144 5.8890 -0.1980 15 6 8.5687 7.1364 0.4307 16 6 7.7771 8.2942 -0.1206 17 8 6.9191 8.0994 -0.9556 18 7 8.0231 9.5462 0.3133 19 6 7.3026 10.5995 -0.1878 20 1 6.5381 10.4258 -0.9307 21 6 7.5567 11.8903 0.2592 22 7 6.8657 12.8998 -0.2209 23 14 8.8794 12.1907 1.5435 24 1 10.1790 12.4353 0.8677 25 1 8.5157 13.3758 2.3609 26 1 8.9952 10.9996 2.4227 27 6 8.4966 4.7232 0.6090 28 1 9.5826 4.6308 0.6218 29 6 7.9837 4.9030 2.0392 30 1 -0.3633 0.5137 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3632 -1.0277 -0.0005 33 1 1.6886 1.8464 0.8901 34 1 1.6885 1.8465 -0.8899 35 1 3.8574 0.6439 -0.8891 36 1 3.8567 0.6440 0.8908 37 1 3.8356 3.1232 0.8913 38 1 3.8364 3.1238 -0.8887 39 1 6.0066 4.4498 0.0027 40 1 7.9172 2.4178 -1.8851 41 1 9.4673 3.1680 -1.4326 42 1 6.9314 4.6448 -2.2773 43 1 8.4063 4.4492 -3.2551 44 1 8.3520 6.6672 -2.1343 45 1 9.7099 5.6777 -1.5474 46 1 9.6273 7.2859 0.2180 47 1 8.4198 7.0751 1.5088 48 1 8.7100 9.7022 0.9802 49 1 7.0432 13.8010 0.0909 50 1 6.9186 5.1336 2.0169 51 1 8.1445 3.9830 2.6012 52 1 8.5225 5.7204 2.5184 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755714766.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:28 Heat of formation + Delta-G solvation = -143.861265 kcal Electronic energy + Delta-G solvation = -30724.080366 eV Core-core repulsion = 26529.453904 eV Total energy + Delta-G solvation = -4194.626462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.47428 -40.36225 -39.32756 -38.78129 -36.05058 -35.42143 -34.60336 -34.15395 -33.64855 -32.18047 -29.27416 -28.71893 -27.72566 -26.55508 -26.18550 -24.11110 -22.97256 -22.49282 -21.30553 -21.16006 -20.25869 -20.00613 -18.31774 -17.81102 -17.32090 -17.21746 -16.88006 -16.66523 -16.50512 -16.37384 -16.15272 -15.78065 -15.42583 -15.36280 -15.19053 -14.82428 -14.55433 -14.45033 -14.29784 -14.13041 -13.79408 -13.60205 -13.13335 -13.02082 -13.00600 -12.85661 -12.82944 -12.71708 -12.58965 -12.37762 -12.25378 -11.97321 -11.96515 -11.88276 -11.79499 -11.59863 -11.40002 -11.22879 -10.80951 -10.61373 -10.31924 -10.17967 -9.92758 -9.16811 -8.36952 -5.96549 1.31988 1.37450 1.46005 1.73088 2.04836 2.23682 2.25822 2.60113 2.93374 3.19846 3.28565 3.64337 3.81827 3.84725 3.99740 4.00599 4.07570 4.18713 4.27405 4.34155 4.39404 4.41547 4.44699 4.46459 4.47509 4.53088 4.53856 4.57890 4.58642 4.72506 4.74784 4.83960 4.86063 4.89716 4.99292 5.02109 5.04177 5.13029 5.23573 5.26473 5.30522 5.40981 5.57565 5.64710 5.95186 6.07624 6.23535 6.24410 6.65514 6.69072 6.95155 7.35065 7.47395 8.05534 8.80695 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012509 B = 0.002355 C = 0.002130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.898240 B =11884.977239 C =13142.048830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.422 6.422 3 C 0.060 3.940 4 C -0.095 4.095 5 C -0.134 4.134 6 C 0.512 3.488 7 O -0.586 6.586 8 N -0.704 5.704 9 C 0.158 3.842 10 H 0.088 0.912 11 C -0.125 4.125 12 C -0.105 4.105 13 C 0.062 3.938 14 N -0.524 5.524 15 C 0.048 3.952 16 C 0.456 3.544 17 O -0.601 6.601 18 N -0.597 5.597 19 C -0.320 4.320 20 H 0.056 0.944 21 C -0.018 4.018 22 N -0.938 5.938 23 Si 0.962 3.038 24 H -0.260 1.260 25 H -0.279 1.279 26 H -0.229 1.229 27 C 0.077 3.923 28 H 0.072 0.928 29 C -0.148 4.148 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.116 0.884 38 H 0.110 0.890 39 H 0.413 0.587 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.072 0.928 44 H 0.052 0.948 45 H 0.045 0.955 46 H 0.077 0.923 47 H 0.124 0.876 48 H 0.387 0.613 49 H 0.277 0.723 50 H 0.057 0.943 51 H 0.073 0.927 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.474 -21.619 5.873 22.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.342 6.342 3 C -0.016 4.016 4 C -0.133 4.133 5 C -0.174 4.174 6 C 0.300 3.700 7 O -0.467 6.467 8 N -0.355 5.355 9 C 0.053 3.947 10 H 0.106 0.894 11 C -0.164 4.164 12 C -0.143 4.143 13 C -0.066 4.066 14 N -0.250 5.250 15 C -0.083 4.083 16 C 0.243 3.757 17 O -0.484 6.484 18 N -0.240 5.240 19 C -0.449 4.449 20 H 0.074 0.926 21 C -0.216 4.216 22 N -0.579 5.579 23 Si 0.783 3.217 24 H -0.185 1.185 25 H -0.204 1.204 26 H -0.153 1.153 27 C -0.031 4.031 28 H 0.089 0.911 29 C -0.205 4.205 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.113 0.887 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.134 0.866 38 H 0.128 0.872 39 H 0.250 0.750 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.073 0.927 43 H 0.091 0.909 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.095 0.905 47 H 0.142 0.858 48 H 0.223 0.777 49 H 0.086 0.914 50 H 0.076 0.924 51 H 0.092 0.908 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.177 -22.464 5.278 23.077 hybrid contribution 0.782 1.531 0.176 1.728 sum 0.605 -20.933 5.454 21.641 Atomic orbital electron populations 1.22923 0.79443 1.03761 1.00950 1.87837 1.21553 1.29118 1.95656 1.22610 0.93110 0.84379 1.01529 1.21095 0.93153 0.96020 1.03054 1.21551 0.90294 0.98991 1.06538 1.20982 0.90498 0.83734 0.74816 1.90671 1.75997 1.27989 1.52034 1.46014 1.06639 1.09336 1.73553 1.20977 0.80233 0.97173 0.96332 0.89377 1.21931 1.01707 0.97428 0.95294 1.21435 1.00925 0.93240 0.98677 1.22047 0.96760 0.98665 0.89104 1.61334 1.61145 1.00421 1.02074 1.21924 0.97236 0.87867 1.01232 1.20903 0.86243 0.83967 0.84543 1.90536 1.36868 1.84836 1.36150 1.42065 1.35781 1.06139 1.39973 1.18967 1.17258 0.86212 1.22479 0.92570 1.26079 1.00710 0.94213 1.00642 1.69808 1.42583 1.00275 1.45211 0.85398 0.78101 0.79807 0.78422 1.18498 1.20394 1.15256 1.21954 0.98745 0.88775 0.93596 0.91066 1.21939 1.02041 1.02763 0.93789 0.93016 0.93183 0.88717 0.91733 0.92060 0.92330 0.91946 0.86575 0.87216 0.75044 0.92473 0.89809 0.92690 0.90923 0.92957 0.93731 0.90484 0.85837 0.77744 0.91368 0.92375 0.90789 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.42 -8.52 10.70 -148.98 -1.59 -10.11 16 3 C 0.06 0.98 5.94 71.98 0.43 1.41 16 4 C -0.10 -1.84 4.87 30.59 0.15 -1.69 16 5 C -0.13 -2.25 5.70 29.85 0.17 -2.08 16 6 C 0.51 11.68 7.79 87.66 0.68 12.37 16 7 O -0.59 -17.52 15.65 -3.05 -0.05 -17.57 16 8 N -0.70 -14.90 3.82 -442.29 -1.69 -16.59 16 9 C 0.16 3.20 2.25 45.04 0.10 3.31 16 10 H 0.09 1.86 7.58 -2.39 -0.02 1.85 16 11 C -0.13 -2.56 5.67 30.68 0.17 -2.39 16 12 C -0.10 -2.46 5.93 30.65 0.18 -2.28 16 13 C 0.06 1.64 5.11 86.33 0.44 2.08 16 14 N -0.52 -13.35 3.53 -875.67 -3.09 -16.44 16 15 C 0.05 1.32 5.31 85.56 0.45 1.77 16 16 C 0.46 19.07 7.49 87.66 0.66 19.73 16 17 O -0.60 -30.88 14.74 -3.08 -0.05 -30.92 16 18 N -0.60 -26.73 5.09 -306.97 -1.56 -28.29 16 19 C -0.32 -18.11 10.16 84.04 0.85 -17.26 16 20 H 0.06 3.81 7.39 -2.91 -0.02 3.78 16 21 C -0.02 -1.00 5.50 84.93 0.47 -0.53 16 22 N -0.94 -55.75 13.96 21.66 0.30 -55.45 16 23 Si 0.96 37.85 27.74 68.60 1.90 39.75 16 24 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 25 H -0.28 -11.01 7.11 99.48 0.71 -10.31 16 26 H -0.23 -7.46 6.52 99.48 0.65 -6.81 16 27 C 0.08 1.46 2.15 44.93 0.10 1.56 16 28 H 0.07 1.14 8.14 -2.39 -0.02 1.12 16 29 C -0.15 -2.47 8.30 71.98 0.60 -1.87 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 32 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.06 1.34 8.10 -2.39 -0.02 1.32 16 36 H 0.06 1.38 8.10 -2.39 -0.02 1.36 16 37 H 0.12 1.49 8.14 -2.39 -0.02 1.47 16 38 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 39 H 0.41 9.09 7.94 -92.71 -0.74 8.35 16 40 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.49 7.73 -2.39 -0.02 1.47 16 43 H 0.07 1.57 8.14 -2.38 -0.02 1.55 16 44 H 0.05 1.82 6.69 -2.39 -0.02 1.80 16 45 H 0.04 1.01 8.14 -2.38 -0.02 0.99 16 46 H 0.08 1.78 8.00 -2.39 -0.02 1.76 16 47 H 0.12 2.74 5.42 -2.39 -0.01 2.73 16 48 H 0.39 14.34 5.76 -92.71 -0.53 13.81 16 49 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 50 H 0.06 1.12 7.66 -2.39 -0.02 1.10 16 51 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 52 H 0.07 1.05 6.38 -2.39 -0.02 1.04 16 Total: -1.00 -77.69 410.05 0.47 -77.22 By element: Atomic # 1 Polarization: 43.11 SS G_CDS: -0.41 Total: 42.71 kcal Atomic # 6 Polarization: 8.99 SS G_CDS: 6.70 Total: 15.69 kcal Atomic # 7 Polarization: -110.72 SS G_CDS: -6.04 Total: -116.77 kcal Atomic # 8 Polarization: -56.91 SS G_CDS: -1.69 Total: -58.60 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 1.90 Total: 39.75 kcal Total: -77.69 0.47 -77.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755714766.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.641 kcal (2) G-P(sol) polarization free energy of solvation -77.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.861 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds