Wall clock time and date at job start Wed Apr 1 2020 00:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.52549 * 2 1 4 4 C 1.53045 * 109.50220 * 120.08378 * 2 1 3 5 5 C 1.53028 * 109.53908 * 181.31823 * 4 2 1 6 6 C 1.53628 * 109.24455 * 298.50852 * 5 4 2 7 7 N 1.46924 * 108.54054 * 54.85770 * 6 5 4 8 8 C 1.34778 * 120.63002 * 126.36709 * 7 6 5 9 9 O 1.21350 * 119.99963 * 174.68326 * 8 7 6 10 10 C 1.49448 * 120.00113 * 354.68932 * 8 7 6 11 11 O 1.21343 * 119.99704 * 274.50456 * 10 8 7 12 12 N 1.34771 * 120.00093 * 94.50271 * 10 8 7 13 13 C 1.46504 * 120.00207 * 4.99151 * 12 10 8 14 14 C 1.46505 * 120.00104 * 184.99163 * 12 10 8 15 15 C 1.52995 * 109.47138 * 270.00229 * 14 12 10 16 16 O 1.42898 * 109.47446 * 64.99577 * 15 14 12 17 17 C 1.42897 * 114.00503 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.47464 * 179.97438 * 17 16 15 19 19 N 1.46501 * 109.47054 * 65.00428 * 18 17 16 20 20 C 1.36938 * 120.00489 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99474 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00226 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99889 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99893 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47342 * 60.00439 * 24 22 20 26 26 H 1.48497 * 109.47304 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47177 * 300.00122 * 24 22 20 28 28 C 1.46930 * 118.73815 * 306.09504 * 7 6 5 29 29 H 1.09010 * 109.47006 * 180.08304 * 1 2 3 30 30 H 1.09003 * 109.47097 * 300.07128 * 1 2 3 31 31 H 1.08998 * 109.47431 * 60.08092 * 1 2 3 32 32 H 1.09000 * 109.45599 * 301.34162 * 4 2 1 33 33 H 1.09001 * 109.45912 * 61.29452 * 4 2 1 34 34 H 1.09002 * 109.50163 * 58.58538 * 5 4 2 35 35 H 1.09005 * 109.49813 * 178.64789 * 5 4 2 36 36 H 1.08999 * 109.73682 * 295.12228 * 6 5 4 37 37 H 1.08999 * 109.66402 * 174.55168 * 6 5 4 38 38 H 1.09000 * 109.47140 * 265.37667 * 13 12 10 39 39 H 1.09004 * 109.47144 * 25.37442 * 13 12 10 40 40 H 1.09000 * 109.47120 * 145.37373 * 13 12 10 41 41 H 1.09001 * 109.47100 * 150.00220 * 14 12 10 42 42 H 1.08997 * 109.46650 * 29.99847 * 14 12 10 43 43 H 1.09002 * 109.47460 * 185.00093 * 15 14 12 44 44 H 1.09004 * 109.47137 * 304.99526 * 15 14 12 45 45 H 1.08995 * 109.47288 * 300.00872 * 17 16 15 46 46 H 1.09006 * 109.46390 * 60.00229 * 17 16 15 47 47 H 1.09004 * 109.47104 * 185.00221 * 18 17 16 48 48 H 1.08992 * 109.47282 * 305.00686 * 18 17 16 49 49 H 0.97002 * 119.99889 * 359.97438 * 19 18 17 50 50 H 0.96998 * 120.00004 * 179.97438 * 23 22 20 51 51 H 1.08997 * 109.58627 * 173.64545 * 28 7 6 52 52 H 1.08995 * 109.58472 * 293.92979 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7231 1.2483 5 6 3.5708 -0.6950 1.2659 6 6 4.1051 -1.4317 0.0282 7 7 3.5046 -0.8290 -1.1696 8 6 4.2811 -0.3862 -2.1783 9 8 3.7722 0.0207 -3.2021 10 6 5.7687 -0.3963 -2.0361 11 8 6.3335 0.5355 -1.5021 12 7 6.4830 -1.4404 -2.5009 13 6 5.8149 -2.5132 -3.2419 14 6 7.9276 -1.5027 -2.2650 15 6 8.6626 -0.8158 -3.4178 16 8 8.3405 0.5764 -3.4259 17 6 8.9791 1.3147 -4.4694 18 6 8.5636 2.7846 -4.3822 19 7 9.0689 3.3617 -3.1341 20 6 8.8193 4.6748 -2.8364 21 1 8.2496 5.2849 -3.5216 22 6 9.2977 5.2214 -1.6535 23 7 9.9917 4.4777 -0.8183 24 14 8.9566 7.0124 -1.2472 25 1 7.4899 7.2334 -1.1770 26 1 9.5715 7.3488 0.0620 27 1 9.5379 7.8791 -2.3038 28 6 2.0412 -0.7238 -1.2496 29 1 -0.3633 -1.0278 0.0015 30 1 -0.3633 0.5150 0.8894 31 1 -0.3634 0.5126 -0.8907 32 1 1.6582 -0.2246 2.1389 33 1 1.6968 -1.7573 1.2352 34 1 3.9159 0.3389 1.2540 35 1 3.9334 -1.1892 2.1673 36 1 3.8339 -2.4861 0.0818 37 1 5.1896 -1.3331 -0.0176 38 1 5.5569 -3.3214 -2.5576 39 1 4.9073 -2.1249 -3.7042 40 1 6.4834 -2.8914 -4.0154 41 1 8.2412 -2.5448 -2.2038 42 1 8.1651 -0.9962 -1.3296 43 1 9.7378 -0.9393 -3.2881 44 1 8.3568 -1.2650 -4.3627 45 1 10.0608 1.2354 -4.3611 46 1 8.6801 0.9097 -5.4363 47 1 8.9790 3.3305 -5.2293 48 1 7.4762 2.8565 -4.4016 49 1 9.5804 2.8136 -2.5185 50 1 10.3263 4.8597 0.0081 51 1 1.7637 -0.1578 -2.1388 52 1 1.6054 -1.7215 -1.3006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755876326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:10 Heat of formation + Delta-G solvation = -95.657974 kcal Electronic energy + Delta-G solvation = -31613.118195 eV Core-core repulsion = 27420.581984 eV Total energy + Delta-G solvation = -4192.536211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -40.95852 -39.15344 -37.79134 -37.35171 -35.65976 -34.20861 -34.08996 -32.11736 -31.40312 -30.07281 -27.68281 -27.41832 -26.77881 -26.11705 -23.96134 -23.32738 -22.61472 -21.79690 -20.96351 -20.24645 -18.86886 -17.90814 -17.01626 -16.85900 -16.72239 -16.22335 -15.69786 -15.42491 -15.09773 -14.94030 -14.73929 -14.58203 -14.28062 -13.82806 -13.74029 -13.65919 -13.28367 -13.08448 -12.95419 -12.91889 -12.83354 -12.68742 -12.44842 -12.33541 -12.12496 -11.77779 -11.50262 -11.43788 -11.30804 -11.24373 -11.14518 -10.97569 -10.75908 -10.69121 -10.64409 -10.35868 -9.88025 -9.53096 -9.36200 -9.06529 -8.96250 -8.76461 -8.66992 -6.67624 -5.54557 -2.81141 2.15255 2.23451 2.62743 3.25021 3.57501 3.60577 3.62775 4.05250 4.19055 4.38643 4.50248 4.52658 4.67170 4.77717 4.87642 4.91169 5.03626 5.06592 5.13520 5.19011 5.26261 5.29739 5.35383 5.37159 5.42521 5.44544 5.47153 5.49256 5.54817 5.65613 5.67523 5.78047 5.82126 5.84439 5.85044 5.87525 5.93736 6.09631 6.11726 6.19645 6.36499 6.54496 6.77510 6.97026 6.97405 7.15392 7.75868 7.77934 7.88175 8.05537 8.64150 9.75290 10.35751 10.72194 11.68665 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009291 B = 0.003395 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.804791 B = 8245.198848 C =10104.122500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 H 0.078 0.922 4 C -0.113 4.113 5 C -0.138 4.138 6 C 0.108 3.892 7 N -0.599 5.599 8 C 0.520 3.480 9 O -0.514 6.514 10 C 0.510 3.490 11 O -0.456 6.456 12 N -0.607 5.607 13 C 0.075 3.925 14 C 0.119 3.881 15 C 0.041 3.959 16 O -0.353 6.353 17 C 0.058 3.942 18 C 0.156 3.844 19 N -0.723 5.723 20 C -0.233 4.233 21 H 0.067 0.933 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.905 3.095 25 H -0.287 1.287 26 H -0.292 1.292 27 H -0.287 1.287 28 C 0.116 3.884 29 H 0.056 0.944 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.093 0.907 42 H 0.097 0.903 43 H 0.056 0.944 44 H 0.041 0.959 45 H 0.046 0.954 46 H 0.039 0.961 47 H 0.030 0.970 48 H 0.024 0.976 49 H 0.387 0.613 50 H 0.253 0.747 51 H 0.094 0.906 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.060 -23.442 0.877 27.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.130 4.130 3 H 0.097 0.903 4 C -0.151 4.151 5 C -0.177 4.177 6 C -0.015 4.015 7 N -0.335 5.335 8 C 0.303 3.697 9 O -0.388 6.388 10 C 0.290 3.710 11 O -0.325 6.325 12 N -0.344 5.344 13 C -0.068 4.068 14 C -0.003 4.003 15 C -0.038 4.038 16 O -0.271 6.271 17 C -0.019 4.019 18 C 0.028 3.972 19 N -0.367 5.367 20 C -0.365 4.365 21 H 0.085 0.915 22 C -0.211 4.211 23 N -0.582 5.582 24 Si 0.736 3.264 25 H -0.214 1.214 26 H -0.218 1.218 27 H -0.214 1.214 28 C -0.006 4.006 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.091 0.909 40 H 0.093 0.907 41 H 0.111 0.889 42 H 0.115 0.885 43 H 0.074 0.926 44 H 0.060 0.940 45 H 0.064 0.936 46 H 0.057 0.943 47 H 0.047 0.953 48 H 0.042 0.958 49 H 0.221 0.779 50 H 0.062 0.938 51 H 0.112 0.888 52 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -15.191 -22.422 0.741 27.093 hybrid contribution 0.194 0.651 0.179 0.703 sum -14.996 -21.770 0.919 26.452 Atomic orbital electron populations 1.21752 0.94159 1.01953 1.02295 1.21548 0.96091 1.00658 0.94729 0.90307 1.21585 0.95115 1.00656 0.97711 1.22015 0.96074 1.02260 0.97317 1.21885 0.98563 0.96865 0.84167 1.48117 1.06943 1.59914 1.18480 1.20533 0.88110 0.77521 0.83524 1.90787 1.74094 1.45749 1.28157 1.20037 0.87318 0.83377 0.80258 1.91034 1.69557 1.31833 1.40051 1.47722 1.08389 1.21966 1.56357 1.21839 0.98613 0.90008 0.96349 1.21603 0.78235 1.00384 1.00040 1.22841 0.98391 0.84824 0.97740 1.88242 1.69591 1.17216 1.52085 1.22766 0.96219 0.93703 0.89176 1.20646 0.97290 0.88419 0.90838 1.42225 1.64790 1.09937 1.19783 1.19196 1.27663 0.87128 1.02465 0.91491 1.24692 1.01244 0.97918 0.97220 1.69671 1.41575 1.35090 1.11835 0.86289 0.77694 0.85229 0.77143 1.21402 1.21775 1.21440 1.21742 0.78360 1.01007 0.99454 0.92507 0.92176 0.92272 0.91376 0.91724 0.90653 0.90312 0.90678 0.89809 0.92413 0.90850 0.90653 0.88888 0.88483 0.92631 0.94038 0.93572 0.94302 0.95294 0.95784 0.77925 0.93763 0.88789 0.91056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.20 37.15 0.34 -0.62 16 2 C -0.11 -0.96 2.87 -90.50 -0.26 -1.22 16 3 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 4 C -0.11 -0.83 5.16 -26.69 -0.14 -0.97 16 5 C -0.14 -1.20 6.10 -26.39 -0.16 -1.37 16 6 C 0.11 0.99 6.38 -3.49 -0.02 0.97 16 7 N -0.60 -7.03 2.97 -173.01 -0.51 -7.54 16 8 C 0.52 8.17 5.81 -11.59 -0.07 8.10 16 9 O -0.51 -9.55 16.14 5.50 0.09 -9.46 16 10 C 0.51 8.63 5.14 -11.59 -0.06 8.57 16 11 O -0.46 -10.16 15.68 -7.44 -0.12 -10.28 16 12 N -0.61 -7.78 2.86 -182.08 -0.52 -8.30 16 13 C 0.08 0.66 10.28 59.85 0.62 1.27 16 14 C 0.12 1.44 5.87 -4.04 -0.02 1.42 16 15 C 0.04 0.57 6.28 37.16 0.23 0.80 16 16 O -0.35 -7.13 8.87 -48.18 -0.43 -7.55 16 17 C 0.06 1.12 6.07 37.16 0.23 1.35 16 18 C 0.16 3.70 6.65 -4.04 -0.03 3.67 16 19 N -0.72 -20.93 5.55 -59.91 -0.33 -21.26 16 20 C -0.23 -7.26 9.99 -15.06 -0.15 -7.41 16 21 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 22 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 23 N -0.93 -30.53 13.06 55.49 0.72 -29.80 16 24 Si 0.91 24.22 29.55 -169.99 -5.02 19.20 16 25 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 26 H -0.29 -7.75 7.11 56.52 0.40 -7.35 16 27 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 28 C 0.12 1.13 5.70 -3.71 -0.02 1.11 16 29 H 0.06 0.31 8.14 -51.92 -0.42 -0.11 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.89 6.31 -51.93 -0.33 0.56 16 38 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.07 0.75 6.53 -51.93 -0.34 0.41 16 40 H 0.07 0.52 8.11 -51.93 -0.42 0.10 16 41 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 42 H 0.10 1.41 7.50 -51.93 -0.39 1.02 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.04 0.51 8.14 -51.93 -0.42 0.08 16 45 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 46 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 47 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.39 11.80 7.67 -40.82 -0.31 11.48 16 50 H 0.25 7.94 8.31 -40.82 -0.34 7.61 16 51 H 0.09 1.07 7.04 -51.93 -0.37 0.71 16 52 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 LS Contribution 418.78 15.07 6.31 6.31 Total: -1.00 -40.34 418.78 -8.73 -49.07 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -9.31 Total: 4.49 kcal Atomic # 6 Polarization: 14.72 SS G_CDS: 0.39 Total: 15.11 kcal Atomic # 7 Polarization: -66.26 SS G_CDS: -0.64 Total: -66.90 kcal Atomic # 8 Polarization: -26.83 SS G_CDS: -0.46 Total: -27.29 kcal Atomic # 14 Polarization: 24.22 SS G_CDS: -5.02 Total: 19.20 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -40.34 -8.73 -49.07 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755876326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.587 kcal (2) G-P(sol) polarization free energy of solvation -40.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds