Wall clock time and date at job start Wed Apr 1 2020 00:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 109.52549 * 2 1 4 4 C 1.53045 * 109.50220 * 120.08378 * 2 1 3 5 5 C 1.53028 * 109.53908 * 181.31823 * 4 2 1 6 6 C 1.53628 * 109.24455 * 298.50852 * 5 4 2 7 7 N 1.46924 * 108.54054 * 54.85770 * 6 5 4 8 8 C 1.34778 * 120.63002 * 126.36709 * 7 6 5 9 9 O 1.21350 * 119.99963 * 174.68326 * 8 7 6 10 10 C 1.49448 * 120.00113 * 354.68932 * 8 7 6 11 11 O 1.21343 * 119.99704 * 274.50456 * 10 8 7 12 12 N 1.34771 * 120.00093 * 94.50271 * 10 8 7 13 13 C 1.46504 * 120.00207 * 4.99151 * 12 10 8 14 14 C 1.46505 * 120.00104 * 184.99163 * 12 10 8 15 15 C 1.52995 * 109.47138 * 270.00229 * 14 12 10 16 16 O 1.42898 * 109.47446 * 64.99577 * 15 14 12 17 17 C 1.42897 * 114.00503 * 179.97438 * 16 15 14 18 18 C 1.52996 * 109.47464 * 179.97438 * 17 16 15 19 19 N 1.46501 * 109.47054 * 65.00428 * 18 17 16 20 20 C 1.36938 * 120.00489 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99474 * 0.02562 * 20 19 18 22 22 C 1.38812 * 120.00226 * 179.97438 * 20 19 18 23 23 N 1.31617 * 119.99889 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99893 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47342 * 60.00439 * 24 22 20 26 26 H 1.48497 * 109.47304 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47177 * 300.00122 * 24 22 20 28 28 C 1.46930 * 118.73815 * 306.09504 * 7 6 5 29 29 H 1.09010 * 109.47006 * 180.08304 * 1 2 3 30 30 H 1.09003 * 109.47097 * 300.07128 * 1 2 3 31 31 H 1.08998 * 109.47431 * 60.08092 * 1 2 3 32 32 H 1.09000 * 109.45599 * 301.34162 * 4 2 1 33 33 H 1.09001 * 109.45912 * 61.29452 * 4 2 1 34 34 H 1.09002 * 109.50163 * 58.58538 * 5 4 2 35 35 H 1.09005 * 109.49813 * 178.64789 * 5 4 2 36 36 H 1.08999 * 109.73682 * 295.12228 * 6 5 4 37 37 H 1.08999 * 109.66402 * 174.55168 * 6 5 4 38 38 H 1.09000 * 109.47140 * 265.37667 * 13 12 10 39 39 H 1.09004 * 109.47144 * 25.37442 * 13 12 10 40 40 H 1.09000 * 109.47120 * 145.37373 * 13 12 10 41 41 H 1.09001 * 109.47100 * 150.00220 * 14 12 10 42 42 H 1.08997 * 109.46650 * 29.99847 * 14 12 10 43 43 H 1.09002 * 109.47460 * 185.00093 * 15 14 12 44 44 H 1.09004 * 109.47137 * 304.99526 * 15 14 12 45 45 H 1.08995 * 109.47288 * 300.00872 * 17 16 15 46 46 H 1.09006 * 109.46390 * 60.00229 * 17 16 15 47 47 H 1.09004 * 109.47104 * 185.00221 * 18 17 16 48 48 H 1.08992 * 109.47282 * 305.00686 * 18 17 16 49 49 H 0.97002 * 119.99889 * 359.97438 * 19 18 17 50 50 H 0.96998 * 120.00004 * 179.97438 * 23 22 20 51 51 H 1.08997 * 109.58627 * 173.64545 * 28 7 6 52 52 H 1.08995 * 109.58472 * 293.92979 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8943 1.0273 0.0000 4 6 2.0409 -0.7231 1.2483 5 6 3.5708 -0.6950 1.2659 6 6 4.1051 -1.4317 0.0282 7 7 3.5046 -0.8290 -1.1696 8 6 4.2811 -0.3862 -2.1783 9 8 3.7722 0.0207 -3.2021 10 6 5.7687 -0.3963 -2.0361 11 8 6.3335 0.5355 -1.5021 12 7 6.4830 -1.4404 -2.5009 13 6 5.8149 -2.5132 -3.2419 14 6 7.9276 -1.5027 -2.2650 15 6 8.6626 -0.8158 -3.4178 16 8 8.3405 0.5764 -3.4259 17 6 8.9791 1.3147 -4.4694 18 6 8.5636 2.7846 -4.3822 19 7 9.0689 3.3617 -3.1341 20 6 8.8193 4.6748 -2.8364 21 1 8.2496 5.2849 -3.5216 22 6 9.2977 5.2214 -1.6535 23 7 9.9917 4.4777 -0.8183 24 14 8.9566 7.0124 -1.2472 25 1 7.4899 7.2334 -1.1770 26 1 9.5715 7.3488 0.0620 27 1 9.5379 7.8791 -2.3038 28 6 2.0412 -0.7238 -1.2496 29 1 -0.3633 -1.0278 0.0015 30 1 -0.3633 0.5150 0.8894 31 1 -0.3634 0.5126 -0.8907 32 1 1.6582 -0.2246 2.1389 33 1 1.6968 -1.7573 1.2352 34 1 3.9159 0.3389 1.2540 35 1 3.9334 -1.1892 2.1673 36 1 3.8339 -2.4861 0.0818 37 1 5.1896 -1.3331 -0.0176 38 1 5.5569 -3.3214 -2.5576 39 1 4.9073 -2.1249 -3.7042 40 1 6.4834 -2.8914 -4.0154 41 1 8.2412 -2.5448 -2.2038 42 1 8.1651 -0.9962 -1.3296 43 1 9.7378 -0.9393 -3.2881 44 1 8.3568 -1.2650 -4.3627 45 1 10.0608 1.2354 -4.3611 46 1 8.6801 0.9097 -5.4363 47 1 8.9790 3.3305 -5.2293 48 1 7.4762 2.8565 -4.4016 49 1 9.5804 2.8136 -2.5185 50 1 10.3263 4.8597 0.0081 51 1 1.7637 -0.1578 -2.1388 52 1 1.6054 -1.7215 -1.3006 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755876326.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:08 Heat of formation + Delta-G solvation = -125.641508 kcal Electronic energy + Delta-G solvation = -31614.418378 eV Core-core repulsion = 27420.581984 eV Total energy + Delta-G solvation = -4193.836394 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.08398 -40.21471 -39.00052 -38.64760 -36.97164 -36.19967 -34.95559 -33.46093 -32.88641 -31.41279 -29.36717 -28.44830 -27.59513 -27.00694 -25.58382 -24.96084 -23.37812 -22.84007 -22.79286 -21.03218 -19.88319 -19.28805 -18.95479 -18.05014 -17.92617 -17.55487 -17.05224 -16.53286 -16.31305 -16.20029 -15.92565 -15.58412 -15.50877 -15.30711 -15.06720 -14.73969 -14.63910 -14.48482 -14.22848 -14.14000 -13.90138 -13.59263 -13.43724 -13.29473 -13.05384 -13.01798 -12.83154 -12.76913 -12.66127 -12.57398 -12.50587 -12.19750 -12.10452 -11.92987 -11.88468 -11.70340 -11.68880 -11.37724 -10.99100 -10.66245 -10.42665 -9.89920 -9.82050 -9.00858 -7.95083 -5.24024 0.98276 1.12907 1.40517 1.40728 1.46948 1.52473 2.28181 2.54106 2.85421 3.14004 3.37446 3.65626 3.80168 3.81603 3.93012 3.94513 4.05267 4.12028 4.18439 4.22353 4.28849 4.32291 4.41904 4.43150 4.44836 4.55077 4.59204 4.61052 4.63496 4.70072 4.73407 4.79916 4.81525 4.86989 4.91894 4.92666 5.03617 5.07480 5.13291 5.22144 5.25729 5.35001 5.40255 5.42539 5.46660 5.94048 6.05689 6.25720 6.46444 6.62787 6.86455 7.31519 8.07862 8.33492 9.28800 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009291 B = 0.003395 C = 0.002770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3012.804791 B = 8245.198848 C =10104.122500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.111 4.111 3 H 0.042 0.958 4 C -0.106 4.106 5 C -0.139 4.139 6 C 0.104 3.896 7 N -0.588 5.588 8 C 0.516 3.484 9 O -0.557 6.557 10 C 0.506 3.494 11 O -0.529 6.529 12 N -0.594 5.594 13 C 0.070 3.930 14 C 0.118 3.882 15 C 0.030 3.970 16 O -0.396 6.396 17 C 0.068 3.932 18 C 0.151 3.849 19 N -0.736 5.736 20 C -0.253 4.253 21 H 0.070 0.930 22 C -0.076 4.076 23 N -0.968 5.968 24 Si 0.978 3.022 25 H -0.284 1.284 26 H -0.288 1.288 27 H -0.270 1.270 28 C 0.112 3.888 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.035 0.965 35 H 0.102 0.898 36 H 0.120 0.880 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.055 0.945 40 H 0.103 0.897 41 H 0.152 0.848 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.075 0.925 47 H 0.046 0.954 48 H 0.000 1.000 49 H 0.375 0.625 50 H 0.251 0.749 51 H 0.070 0.930 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.034 -26.421 0.909 30.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.130 4.130 3 H 0.060 0.940 4 C -0.144 4.144 5 C -0.177 4.177 6 C -0.018 4.018 7 N -0.321 5.321 8 C 0.299 3.701 9 O -0.435 6.435 10 C 0.288 3.712 11 O -0.404 6.404 12 N -0.330 5.330 13 C -0.072 4.072 14 C -0.003 4.003 15 C -0.047 4.047 16 O -0.316 6.316 17 C -0.009 4.009 18 C 0.024 3.976 19 N -0.379 5.379 20 C -0.385 4.385 21 H 0.088 0.912 22 C -0.268 4.268 23 N -0.618 5.618 24 Si 0.806 3.194 25 H -0.211 1.211 26 H -0.214 1.214 27 H -0.196 1.196 28 C -0.009 4.009 29 H 0.097 0.903 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.121 0.879 36 H 0.137 0.863 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.074 0.926 40 H 0.121 0.879 41 H 0.169 0.831 42 H 0.083 0.917 43 H 0.090 0.910 44 H 0.086 0.914 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.018 0.982 49 H 0.206 0.794 50 H 0.060 0.940 51 H 0.088 0.912 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -16.191 -25.481 0.744 30.199 hybrid contribution 0.464 1.444 0.157 1.525 sum -15.727 -24.037 0.901 28.739 Atomic orbital electron populations 1.21715 0.92204 1.03384 1.02259 1.21536 0.97653 0.98722 0.95086 0.93958 1.21579 0.93620 1.02197 0.96966 1.22030 0.97443 1.00116 0.98091 1.22161 0.97566 0.98999 0.83059 1.48271 1.07726 1.58157 1.17972 1.20476 0.87941 0.77697 0.84027 1.90750 1.74548 1.48177 1.30012 1.20370 0.87931 0.83361 0.79541 1.90994 1.70876 1.34763 1.43739 1.47869 1.08769 1.21457 1.54861 1.22154 0.98265 0.89253 0.97495 1.21825 0.77600 1.03002 0.97883 1.23209 0.99808 0.81993 0.99675 1.88214 1.70228 1.20522 1.52598 1.22602 0.96429 0.91015 0.90829 1.20830 0.95625 0.91977 0.89173 1.42405 1.64862 1.09356 1.21251 1.19630 1.27578 0.88363 1.02948 0.91190 1.25636 1.01307 1.02848 0.97053 1.69848 1.42656 1.37140 1.12155 0.85158 0.77471 0.79590 0.77211 1.21092 1.21372 1.19609 1.21973 0.77028 1.02813 0.99040 0.90251 0.91660 0.92957 0.90700 0.88720 0.94626 0.87941 0.86259 0.91629 0.88772 0.92573 0.87867 0.83065 0.91738 0.91042 0.91439 0.92877 0.90731 0.93644 0.98244 0.79367 0.93987 0.91166 0.87327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.62 9.20 71.98 0.66 -0.96 16 2 C -0.11 -1.86 2.87 -10.72 -0.03 -1.89 16 3 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 4 C -0.11 -1.34 5.16 30.62 0.16 -1.18 16 5 C -0.14 -2.33 6.10 30.81 0.19 -2.14 16 6 C 0.10 1.80 6.38 86.51 0.55 2.35 16 7 N -0.59 -13.87 2.97 -819.64 -2.43 -16.31 16 8 C 0.52 17.04 5.81 87.27 0.51 17.55 16 9 O -0.56 -22.03 16.14 -3.25 -0.05 -22.08 16 10 C 0.51 18.04 5.14 87.27 0.45 18.49 16 11 O -0.53 -25.61 15.68 9.15 0.14 -25.47 16 12 N -0.59 -14.81 2.86 -848.35 -2.42 -17.24 16 13 C 0.07 1.03 10.28 127.77 1.31 2.34 16 14 C 0.12 2.71 5.87 86.38 0.51 3.22 16 15 C 0.03 0.81 6.28 71.98 0.45 1.26 16 16 O -0.40 -16.33 8.87 -136.60 -1.21 -17.54 16 17 C 0.07 2.62 6.07 71.98 0.44 3.05 16 18 C 0.15 7.36 6.65 86.38 0.57 7.93 16 19 N -0.74 -44.30 5.55 -343.46 -1.91 -46.20 16 20 C -0.25 -16.28 9.99 84.03 0.84 -15.44 16 21 H 0.07 4.33 7.83 -2.91 -0.02 4.31 16 22 C -0.08 -4.89 5.50 84.86 0.47 -4.43 16 23 N -0.97 -65.24 13.06 21.65 0.28 -64.95 16 24 Si 0.98 50.87 29.55 68.60 2.03 52.90 16 25 H -0.28 -14.56 7.11 99.48 0.71 -13.86 16 26 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 27 H -0.27 -13.24 7.11 99.48 0.71 -12.53 16 28 C 0.11 2.12 5.70 86.36 0.49 2.61 16 29 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 30 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 36 H 0.12 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.07 1.41 6.31 -2.39 -0.02 1.40 16 38 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 39 H 0.06 1.08 6.53 -2.38 -0.02 1.06 16 40 H 0.10 0.99 8.11 -2.39 -0.02 0.97 16 41 H 0.15 1.66 8.07 -2.39 -0.02 1.64 16 42 H 0.06 1.94 7.50 -2.39 -0.02 1.92 16 43 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 44 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 45 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.07 2.30 8.14 -2.38 -0.02 2.29 16 47 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 48 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 49 H 0.37 23.92 7.67 -92.71 -0.71 23.21 16 50 H 0.25 16.23 8.31 -92.71 -0.77 15.46 16 51 H 0.07 1.68 7.04 -2.39 -0.02 1.67 16 52 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 Total: -1.00 -96.14 418.78 2.18 -93.96 By element: Atomic # 1 Polarization: 30.00 SS G_CDS: 0.18 Total: 30.18 kcal Atomic # 6 Polarization: 25.19 SS G_CDS: 7.57 Total: 32.76 kcal Atomic # 7 Polarization: -138.22 SS G_CDS: -6.48 Total: -144.70 kcal Atomic # 8 Polarization: -63.97 SS G_CDS: -1.12 Total: -65.10 kcal Atomic # 14 Polarization: 50.87 SS G_CDS: 2.03 Total: 52.90 kcal Total: -96.14 2.18 -93.96 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755876326.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.684 kcal (2) G-P(sol) polarization free energy of solvation -96.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.820 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds