Wall clock time and date at job start Wed Apr 1 2020 01:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46506 * 109.47075 * 2 1 4 4 C 1.46494 * 119.99914 * 269.99902 * 3 2 1 5 5 C 1.52995 * 109.47346 * 269.99924 * 4 3 2 6 6 C 1.34778 * 119.99766 * 89.99765 * 3 2 1 7 7 O 1.21280 * 120.00307 * 0.02562 * 6 3 2 8 8 C 1.50696 * 119.99726 * 180.27313 * 6 3 2 9 9 C 1.53005 * 109.46991 * 179.72722 * 8 6 3 10 10 C 1.50696 * 109.46991 * 179.97438 * 9 8 6 11 11 O 1.21279 * 120.00374 * 0.02562 * 10 9 8 12 12 N 1.34788 * 119.99746 * 179.97438 * 10 9 8 13 13 C 1.46502 * 119.99607 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.46209 * 34.97618 * 13 12 10 15 15 C 1.53042 * 109.46079 * 274.99883 * 13 12 10 16 16 C 1.53186 * 109.31283 * 178.61610 * 15 13 12 17 17 N 1.46924 * 108.77511 * 54.63656 * 16 15 13 18 18 C 1.36939 * 120.63177 * 126.40943 * 17 16 15 19 19 H 1.08002 * 120.00217 * 207.67567 * 18 17 16 20 20 C 1.38818 * 119.99893 * 27.67588 * 18 17 16 21 21 N 1.31622 * 119.99692 * 17.35615 * 20 18 17 22 22 Si 1.86798 * 119.99906 * 197.35360 * 20 18 17 23 23 H 1.48503 * 109.46970 * 90.00102 * 22 20 18 24 24 H 1.48498 * 109.47031 * 209.99893 * 22 20 18 25 25 H 1.48496 * 109.47607 * 330.00257 * 22 20 18 26 26 C 1.46928 * 118.73969 * 306.39289 * 17 16 15 27 27 C 1.53041 * 109.45679 * 154.93341 * 13 12 10 28 28 H 1.09000 * 109.49875 * 61.42878 * 27 13 12 29 29 O 1.42902 * 109.49940 * 301.33526 * 27 13 12 30 30 H 1.09004 * 109.47266 * 59.99898 * 1 2 3 31 31 H 1.09000 * 109.47347 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47102 * 300.00270 * 1 2 3 33 33 H 1.09002 * 109.47092 * 240.00250 * 2 1 3 34 34 H 1.09001 * 109.46814 * 119.99887 * 2 1 3 35 35 H 1.08997 * 109.47576 * 30.00547 * 4 3 2 36 36 H 1.09006 * 109.47027 * 150.00299 * 4 3 2 37 37 H 1.09006 * 109.47158 * 300.00612 * 5 4 3 38 38 H 1.08999 * 109.46916 * 59.99845 * 5 4 3 39 39 H 1.09000 * 109.47549 * 180.02562 * 5 4 3 40 40 H 1.09000 * 109.47494 * 299.72682 * 8 6 3 41 41 H 1.08999 * 109.47228 * 59.73141 * 8 6 3 42 42 H 1.09000 * 109.46969 * 300.00281 * 9 8 6 43 43 H 1.08999 * 109.46793 * 60.00151 * 9 8 6 44 44 H 0.96995 * 119.99804 * 359.97438 * 12 10 9 45 45 H 1.09000 * 109.49811 * 298.57536 * 15 13 12 46 46 H 1.09004 * 109.49798 * 58.63066 * 15 13 12 47 47 H 1.08999 * 109.58560 * 174.42278 * 16 15 13 48 48 H 1.08998 * 109.58909 * 294.70487 * 16 15 13 49 49 H 0.96999 * 119.99628 * 179.97438 * 21 20 18 50 50 H 1.09003 * 109.58674 * 173.39642 * 26 17 16 51 51 H 1.08999 * 109.58230 * 293.81684 * 26 17 16 52 52 H 0.96697 * 114.00275 * 180.02562 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 3.7075 1.8315 -1.7104 6 6 2.2429 2.0166 1.1672 7 8 2.0412 1.4447 2.2176 8 6 2.7393 3.4394 1.1672 9 6 2.9041 3.9221 2.6098 10 6 3.4011 5.3447 2.6098 11 8 3.6032 5.9165 1.5595 12 7 3.6200 5.9821 3.7771 13 6 4.1027 7.3653 3.7771 14 1 3.6684 7.9015 2.9334 15 6 5.6283 7.3730 3.6553 16 6 6.1264 8.8212 3.6208 17 7 5.6119 9.5266 4.8025 18 6 6.4634 10.1917 5.6438 19 1 6.2053 10.3168 6.6851 20 6 7.6582 10.7051 5.1583 21 7 7.8282 10.8637 3.8628 22 14 9.0247 11.1710 6.3436 23 1 9.9073 9.9978 6.5673 24 1 9.8196 12.2859 5.7690 25 1 8.4338 11.5994 7.6368 26 6 4.1662 9.5051 5.0642 27 6 3.6900 8.0493 5.0825 28 1 4.1441 7.5285 5.9255 29 8 2.2671 8.0145 5.2101 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.5817 1.6878 -2.0284 36 1 2.0956 3.1411 -1.1383 37 1 4.3883 2.2155 -0.9506 38 1 3.8744 0.7623 -1.8407 39 1 3.8893 2.3457 -2.6541 40 1 3.7005 3.4890 0.6556 41 1 2.0199 4.0753 0.6513 42 1 1.9429 3.8726 3.1215 43 1 3.6235 3.2863 3.1257 44 1 3.4573 5.5251 4.6171 45 1 6.0642 6.8585 4.5117 46 1 5.9225 6.8645 2.7372 47 1 7.2163 8.8331 3.6340 48 1 5.7667 9.3099 2.7154 49 1 8.6630 11.2228 3.5235 50 1 3.9627 9.9684 6.0296 51 1 3.6445 10.0504 4.2777 52 1 1.9342 8.4317 6.0164 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100121460.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:09 Heat of formation + Delta-G solvation = -111.958944 kcal Electronic energy + Delta-G solvation = -30562.251828 eV Core-core repulsion = 26369.008755 eV Total energy + Delta-G solvation = -4193.243074 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.43441 -39.60694 -37.94930 -36.51231 -35.40397 -34.30195 -33.39861 -32.18755 -31.76435 -30.08122 -29.72387 -28.56352 -26.24144 -24.80593 -23.93603 -22.97596 -22.32638 -21.67940 -20.10282 -19.41308 -19.07860 -17.76475 -17.11196 -16.80668 -16.57120 -16.29255 -16.03538 -15.72599 -15.00876 -14.83336 -14.34251 -14.23101 -14.09012 -13.95202 -13.74795 -13.53422 -13.34837 -13.13550 -12.99966 -12.74884 -12.63573 -12.50112 -12.26062 -12.13016 -12.03176 -11.91631 -11.60190 -11.56868 -11.33553 -11.18817 -11.10780 -10.89005 -10.67282 -10.33059 -10.25137 -9.99617 -9.95353 -9.79364 -9.69932 -9.38646 -9.04712 -8.72568 -8.44810 -6.78363 -5.85624 -3.29686 2.40475 2.63146 2.87802 3.33977 3.41119 3.42388 3.44301 4.25560 4.37346 4.50984 4.53179 4.65630 4.73435 4.81811 4.87737 4.98232 5.03204 5.08716 5.11128 5.25994 5.30347 5.32590 5.41821 5.44581 5.48098 5.52103 5.56860 5.58760 5.70819 5.76153 5.78317 5.83736 5.86711 5.98026 6.12562 6.23263 6.33749 6.48505 6.54017 6.66657 6.76925 6.89498 7.05145 7.28579 7.60088 7.72422 7.77757 7.92192 7.92572 8.36925 8.47886 9.12467 9.74851 10.30692 11.22906 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020923 B = 0.002060 C = 0.001957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.904529 B =13589.184456 C =14302.747427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 N -0.616 5.616 4 C 0.102 3.898 5 C -0.173 4.173 6 C 0.516 3.484 7 O -0.541 6.541 8 C -0.123 4.123 9 C -0.125 4.125 10 C 0.512 3.488 11 O -0.547 6.547 12 N -0.716 5.716 13 C 0.162 3.838 14 H 0.087 0.913 15 C -0.146 4.146 16 C 0.171 3.829 17 N -0.588 5.588 18 C -0.259 4.259 19 H 0.067 0.933 20 C 0.004 3.996 21 N -0.899 5.899 22 Si 0.905 3.095 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.279 1.279 26 C 0.121 3.879 27 C 0.079 3.921 28 H 0.056 0.944 29 O -0.571 6.571 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.059 0.941 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.102 0.898 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.397 0.603 45 H 0.057 0.943 46 H 0.062 0.938 47 H 0.093 0.907 48 H 0.024 0.976 49 H 0.256 0.744 50 H 0.060 0.940 51 H 0.029 0.971 52 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.603 -19.762 -7.831 24.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.350 5.350 4 C -0.021 4.021 5 C -0.231 4.231 6 C 0.305 3.695 7 O -0.418 6.418 8 C -0.163 4.163 9 C -0.165 4.165 10 C 0.298 3.702 11 O -0.425 6.425 12 N -0.365 5.365 13 C 0.059 3.941 14 H 0.105 0.895 15 C -0.186 4.186 16 C 0.045 3.955 17 N -0.312 5.312 18 C -0.388 4.388 19 H 0.085 0.915 20 C -0.195 4.195 21 N -0.543 5.543 22 Si 0.735 3.265 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.204 1.204 26 C -0.007 4.007 27 C 0.018 3.982 28 H 0.074 0.926 29 O -0.375 6.375 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.103 0.897 37 H 0.080 0.920 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.230 0.770 45 H 0.076 0.924 46 H 0.080 0.920 47 H 0.111 0.889 48 H 0.042 0.958 49 H 0.066 0.934 50 H 0.078 0.922 51 H 0.047 0.953 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -12.374 -19.871 -8.686 24.969 hybrid contribution 0.649 0.350 1.377 1.562 sum -11.724 -19.521 -7.309 23.916 Atomic orbital electron populations 1.22126 0.95898 1.02165 1.02367 1.21399 0.94375 0.82425 1.03028 1.48071 1.66313 1.14349 1.06270 1.21634 0.97061 0.98242 0.85193 1.22218 0.96553 1.02239 1.02123 1.20811 0.76754 0.88795 0.83120 1.90690 1.51959 1.68230 1.30948 1.21428 1.04228 0.92315 0.98379 1.21370 1.04139 0.93553 0.97484 1.20524 0.77420 0.88264 0.84027 1.90695 1.52358 1.68242 1.31209 1.46093 1.67146 1.15032 1.08227 1.20991 0.95007 0.80434 0.97709 0.89492 1.22596 0.92985 1.01957 1.01101 1.20826 1.00594 0.85676 0.88435 1.44044 0.99666 1.58963 1.28528 1.19173 0.99506 1.29853 0.90292 0.91504 1.25077 1.00157 0.98441 0.95812 1.70040 1.25399 1.47395 1.11429 0.86255 0.82193 0.77748 0.80337 1.21346 1.21694 1.20406 1.21528 0.87327 0.92199 0.99621 1.22780 0.79981 0.98868 0.96530 0.92605 1.86480 1.21744 1.82400 1.46916 0.92639 0.91664 0.92154 0.90727 0.89898 0.90278 0.89658 0.92026 0.92423 0.91139 0.88002 0.88081 0.88381 0.88409 0.76951 0.92384 0.91964 0.88888 0.95827 0.93437 0.92185 0.95336 0.78011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.24 37.16 0.38 -0.74 16 2 C 0.11 0.80 6.13 -4.04 -0.02 0.78 16 3 N -0.62 -5.16 2.47 -173.69 -0.43 -5.59 16 4 C 0.10 0.62 5.94 -4.05 -0.02 0.60 16 5 C -0.17 -1.03 10.24 37.16 0.38 -0.65 16 6 C 0.52 5.64 7.67 -10.99 -0.08 5.56 16 7 O -0.54 -7.58 15.56 5.56 0.09 -7.49 16 8 C -0.12 -1.29 3.54 -27.88 -0.10 -1.39 16 9 C -0.12 -1.44 4.99 -27.88 -0.14 -1.58 16 10 C 0.51 7.65 7.79 -10.98 -0.09 7.56 16 11 O -0.55 -10.03 15.64 5.56 0.09 -9.94 16 12 N -0.72 -10.66 4.92 -53.76 -0.26 -10.92 16 13 C 0.16 2.92 2.12 -67.89 -0.14 2.78 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 15 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16 16 C 0.17 4.08 5.31 -3.71 -0.02 4.06 16 17 N -0.59 -14.36 2.99 -172.32 -0.52 -14.88 16 18 C -0.26 -6.90 9.59 -15.06 -0.14 -7.05 16 19 H 0.07 1.73 7.89 -52.49 -0.41 1.32 16 20 C 0.00 0.12 4.91 -17.43 -0.09 0.03 16 21 N -0.90 -25.77 11.19 55.49 0.62 -25.15 16 22 Si 0.90 21.27 29.59 -169.99 -5.03 16.25 16 23 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 26 C 0.12 2.46 6.14 -3.71 -0.02 2.43 16 27 C 0.08 1.35 3.14 -26.61 -0.08 1.27 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 O -0.57 -8.56 13.16 -35.23 -0.46 -9.02 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 34 H 0.08 0.73 7.42 -51.93 -0.39 0.34 16 35 H 0.08 0.35 8.07 -51.93 -0.42 -0.06 16 36 H 0.09 0.52 6.43 -51.93 -0.33 0.19 16 37 H 0.06 0.45 7.25 -51.93 -0.38 0.07 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.10 1.05 7.17 -51.93 -0.37 0.67 16 41 H 0.10 1.02 7.35 -51.93 -0.38 0.64 16 42 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 43 H 0.10 1.07 8.10 -51.93 -0.42 0.64 16 44 H 0.40 4.97 8.60 -40.82 -0.35 4.62 16 45 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 46 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 47 H 0.09 2.46 6.04 -51.93 -0.31 2.15 16 48 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 49 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 50 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 51 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 52 H 0.37 4.03 9.08 45.56 0.41 4.44 16 LS Contribution 415.05 15.07 6.25 6.25 Total: -1.00 -33.66 415.05 -8.36 -42.02 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.36 Total: 7.83 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: -0.35 Total: 10.65 kcal Atomic # 7 Polarization: -55.95 SS G_CDS: -0.59 Total: -56.54 kcal Atomic # 8 Polarization: -26.17 SS G_CDS: -0.29 Total: -26.46 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.03 Total: 16.25 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.66 -8.36 -42.02 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100121460.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.939 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds