Wall clock time and date at job start Wed Apr 1 2020 01:33:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47027 * 2 1 4 4 C 1.46493 * 120.00392 * 270.00368 * 3 2 1 5 5 C 1.52995 * 109.47554 * 89.99987 * 4 3 2 6 6 C 1.34779 * 119.99589 * 90.00091 * 3 2 1 7 7 O 1.21277 * 119.99777 * 179.97438 * 6 3 2 8 8 C 1.50700 * 120.00084 * 0.02562 * 6 3 2 9 9 C 1.52995 * 109.47150 * 179.97438 * 8 6 3 10 10 C 1.50700 * 109.47150 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99950 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00084 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00132 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.45934 * 34.99230 * 13 12 10 15 15 C 1.53045 * 109.45391 * 275.02219 * 13 12 10 16 16 C 1.53201 * 109.30983 * 178.61516 * 15 13 12 17 17 N 1.46921 * 108.77276 * 54.63297 * 16 15 13 18 18 C 1.36945 * 120.62646 * 126.41727 * 17 16 15 19 19 H 1.08004 * 119.99579 * 331.82232 * 18 17 16 20 20 C 1.38809 * 120.00207 * 151.82569 * 18 17 16 21 21 N 1.31623 * 119.99874 * 343.06445 * 20 18 17 22 22 Si 1.86792 * 120.00085 * 163.06127 * 20 18 17 23 23 H 1.48497 * 109.47167 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47099 * 120.00161 * 22 20 18 25 25 H 1.48511 * 109.47181 * 239.99877 * 22 20 18 26 26 C 1.46919 * 118.74471 * 306.39063 * 17 16 15 27 27 C 1.53036 * 109.46215 * 154.97371 * 13 12 10 28 28 H 1.09008 * 109.49774 * 301.33220 * 27 13 12 29 29 O 1.42897 * 109.50346 * 61.42819 * 27 13 12 30 30 H 1.09004 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47057 * 299.99400 * 1 2 3 32 32 H 1.08998 * 109.47337 * 59.99646 * 1 2 3 33 33 H 1.08998 * 109.46826 * 120.00484 * 2 1 3 34 34 H 1.09001 * 109.46604 * 240.00363 * 2 1 3 35 35 H 1.08997 * 109.47071 * 210.00241 * 4 3 2 36 36 H 1.09007 * 109.47043 * 329.99894 * 4 3 2 37 37 H 1.08997 * 109.46901 * 59.99743 * 5 4 3 38 38 H 1.08993 * 109.47683 * 180.02562 * 5 4 3 39 39 H 1.09006 * 109.47262 * 300.00423 * 5 4 3 40 40 H 1.08993 * 109.47326 * 300.00192 * 8 6 3 41 41 H 1.09007 * 109.47037 * 59.99735 * 8 6 3 42 42 H 1.08995 * 109.47865 * 300.00089 * 9 8 6 43 43 H 1.09007 * 109.46945 * 60.00195 * 9 8 6 44 44 H 0.97001 * 120.00168 * 359.97438 * 12 10 9 45 45 H 1.08995 * 109.50171 * 298.56461 * 15 13 12 46 46 H 1.09000 * 109.50052 * 58.66810 * 15 13 12 47 47 H 1.08994 * 109.58603 * 174.42401 * 16 15 13 48 48 H 1.08997 * 109.58197 * 294.85000 * 16 15 13 49 49 H 0.96996 * 119.99979 * 179.97438 * 21 20 18 50 50 H 1.08996 * 109.59189 * 173.39541 * 26 17 16 51 51 H 1.08995 * 109.59086 * 293.68402 * 26 17 16 52 52 H 0.96692 * 114.00328 * 180.02562 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 0.9875 2.7932 -1.7103 6 6 2.2430 2.0165 1.1673 7 8 2.6476 3.1597 1.1673 8 6 1.9923 1.3058 2.4723 9 6 2.3242 2.2429 3.6353 10 6 2.0730 1.5324 4.9403 11 8 1.6688 0.3889 4.9402 12 7 2.2975 2.1678 6.1076 13 6 2.0538 1.4769 7.3763 14 1 2.3064 0.4220 7.2697 15 6 0.5771 1.6119 7.7548 16 6 0.3188 0.8593 9.0639 17 7 1.2514 1.3540 10.0857 18 6 0.7883 1.8066 11.2924 19 1 -0.2020 2.2315 11.3658 20 6 1.5915 1.7193 12.4211 21 7 2.6382 0.9213 12.4239 22 14 1.1870 2.7344 13.9361 23 1 -0.0311 3.5439 13.6788 24 1 0.9450 1.8293 15.0883 25 1 2.3253 3.6366 14.2459 26 6 2.6902 1.3535 9.7887 27 6 2.9217 2.1009 8.4715 28 1 3.9722 2.0255 8.1905 29 8 2.5685 3.4759 8.6346 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.0644 2.7985 -1.1383 36 1 2.5505 1.3452 -2.0284 37 1 0.6994 3.5197 -0.9505 38 1 1.1690 3.3067 -2.6544 39 1 0.1855 2.0665 -1.8406 40 1 0.9446 1.0112 2.5303 41 1 2.6229 0.4185 2.5298 42 1 3.3721 2.5372 3.5773 43 1 1.6939 3.1304 3.5780 44 1 2.6212 3.0822 6.1077 45 1 0.3300 2.6654 7.8860 46 1 -0.0415 1.1884 6.9636 47 1 -0.7066 1.0340 9.3896 48 1 0.4785 -0.2078 8.9094 49 1 3.1997 0.8605 13.2124 50 1 3.2296 1.8544 10.5925 51 1 3.0438 0.3267 9.6958 52 1 3.0803 3.9355 9.3142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100121461.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:13 Heat of formation + Delta-G solvation = -109.576109 kcal Electronic energy + Delta-G solvation = -30691.158454 eV Core-core repulsion = 26498.018708 eV Total energy + Delta-G solvation = -4193.139746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.47404 -39.63403 -37.94317 -36.57562 -34.78706 -34.30171 -33.38813 -32.18927 -31.76715 -30.11936 -29.39170 -29.04955 -26.28646 -24.79847 -23.65045 -23.10925 -22.30885 -21.67327 -20.06170 -19.37993 -19.20327 -17.84088 -17.23637 -16.63353 -16.25762 -16.19037 -15.95367 -15.42663 -15.12469 -14.88525 -14.34570 -14.22923 -13.91997 -13.87128 -13.83460 -13.70758 -13.41487 -13.20933 -13.00310 -12.79413 -12.65540 -12.51666 -12.16614 -12.04316 -11.99004 -11.91186 -11.77222 -11.35491 -11.24375 -11.13854 -11.04248 -10.81489 -10.57300 -10.47353 -10.17688 -10.03860 -10.00916 -9.78277 -9.56075 -9.16427 -9.08596 -8.67383 -8.49867 -6.68193 -5.82104 -3.23062 2.37164 2.60930 2.81193 3.34502 3.42602 3.44009 3.46691 4.22836 4.47087 4.47526 4.64054 4.71659 4.77387 4.82853 4.85860 4.96494 4.99806 5.01894 5.09508 5.27789 5.31414 5.34850 5.38215 5.42767 5.47300 5.49404 5.58025 5.59833 5.68209 5.72620 5.80927 5.90432 5.96363 6.04768 6.20983 6.22799 6.30559 6.47014 6.57034 6.79578 6.87804 6.99136 7.02326 7.17309 7.42980 7.76198 7.79417 7.89473 8.24980 8.42620 8.43624 9.17519 9.80587 10.37562 11.26693 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030264 B = 0.001953 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.969741 B =14334.489624 C =14646.340487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.102 3.898 3 N -0.616 5.616 4 C 0.111 3.889 5 C -0.169 4.169 6 C 0.516 3.484 7 O -0.540 6.540 8 C -0.123 4.123 9 C -0.126 4.126 10 C 0.509 3.491 11 O -0.550 6.550 12 N -0.718 5.718 13 C 0.162 3.838 14 H 0.090 0.910 15 C -0.136 4.136 16 C 0.148 3.852 17 N -0.583 5.583 18 C -0.241 4.241 19 H 0.066 0.934 20 C -0.002 4.002 21 N -0.907 5.907 22 Si 0.903 3.097 23 H -0.278 1.278 24 H -0.291 1.291 25 H -0.290 1.290 26 C 0.145 3.855 27 C 0.073 3.927 28 H 0.043 0.957 29 O -0.559 6.559 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.059 0.941 38 H 0.064 0.936 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.403 0.597 45 H 0.069 0.931 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.019 0.981 49 H 0.253 0.747 50 H 0.095 0.905 51 H 0.028 0.972 52 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.631 0.467 -26.324 26.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.021 4.021 3 N -0.350 5.350 4 C -0.012 4.012 5 C -0.227 4.227 6 C 0.305 3.695 7 O -0.417 6.417 8 C -0.163 4.163 9 C -0.166 4.166 10 C 0.295 3.705 11 O -0.428 6.428 12 N -0.368 5.368 13 C 0.058 3.942 14 H 0.107 0.893 15 C -0.176 4.176 16 C 0.021 3.979 17 N -0.305 5.305 18 C -0.371 4.371 19 H 0.084 0.916 20 C -0.200 4.200 21 N -0.553 5.553 22 Si 0.733 3.267 23 H -0.203 1.203 24 H -0.218 1.218 25 H -0.216 1.216 26 C 0.018 3.982 27 C 0.011 3.989 28 H 0.061 0.939 29 O -0.365 6.365 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.103 0.897 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.116 0.884 43 H 0.117 0.883 44 H 0.237 0.763 45 H 0.088 0.912 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.037 0.963 49 H 0.063 0.937 50 H 0.113 0.887 51 H 0.046 0.954 52 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 0.234 0.070 -26.643 26.644 hybrid contribution 0.374 0.941 1.227 1.591 sum 0.608 1.011 -25.415 25.443 Atomic orbital electron populations 1.22296 0.95654 1.02648 1.02731 1.21650 0.94798 0.81985 1.03629 1.48065 1.66449 1.14483 1.06011 1.21418 0.98375 0.96870 0.84509 1.22199 0.98069 1.00903 1.01576 1.20807 0.76558 0.86583 0.85568 1.90696 1.45585 1.17918 1.87528 1.21425 1.05065 0.99445 0.90376 1.21378 1.04855 0.99379 0.91021 1.20586 0.77422 0.86844 0.85617 1.90686 1.46228 1.18043 1.87871 1.46222 1.67084 1.17749 1.05703 1.20998 0.96315 0.96298 0.80561 0.89251 1.22296 0.94526 1.02167 0.98600 1.20896 0.94429 0.94632 0.87932 1.43882 1.00730 1.72798 1.13111 1.19223 1.01166 1.32117 0.84565 0.91647 1.25034 0.99026 0.98617 0.97323 1.70028 1.18794 1.37347 1.29087 0.86210 0.77739 0.79820 0.82942 1.20269 1.21823 1.21637 1.21431 0.86681 0.97383 0.92692 1.22833 0.95077 0.83396 0.97553 0.93923 1.86346 1.66414 1.22469 1.61248 0.91248 0.92082 0.92157 0.89694 0.90265 0.89906 0.90718 0.92180 0.91753 0.92386 0.88036 0.88089 0.88378 0.88339 0.76290 0.91239 0.92951 0.92479 0.96279 0.93708 0.88695 0.95448 0.77836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.97 10.24 37.16 0.38 -0.59 16 2 C 0.10 0.58 5.98 -4.04 -0.02 0.55 16 3 N -0.62 -4.92 2.47 -173.69 -0.43 -5.35 16 4 C 0.11 0.77 6.17 -4.05 -0.02 0.75 16 5 C -0.17 -1.11 10.24 37.16 0.38 -0.73 16 6 C 0.52 5.44 7.67 -10.98 -0.08 5.36 16 7 O -0.54 -7.42 15.56 5.56 0.09 -7.34 16 8 C -0.12 -1.22 3.54 -27.89 -0.10 -1.32 16 9 C -0.13 -1.39 4.99 -27.89 -0.14 -1.53 16 10 C 0.51 7.26 7.79 -10.98 -0.09 7.18 16 11 O -0.55 -9.52 15.64 5.55 0.09 -9.43 16 12 N -0.72 -10.51 5.05 -53.76 -0.27 -10.78 16 13 C 0.16 2.86 2.20 -67.89 -0.15 2.71 16 14 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 15 C -0.14 -2.57 5.51 -26.60 -0.15 -2.71 16 16 C 0.15 3.20 6.52 -3.71 -0.02 3.18 16 17 N -0.58 -14.33 2.93 -172.33 -0.51 -14.84 16 18 C -0.24 -6.51 9.58 -15.06 -0.14 -6.65 16 19 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 20 C 0.00 -0.06 4.92 -17.43 -0.09 -0.15 16 21 N -0.91 -25.65 11.20 55.49 0.62 -25.03 16 22 Si 0.90 21.38 29.59 -169.99 -5.03 16.35 16 23 H -0.28 -6.49 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 C 0.15 3.29 4.95 -3.71 -0.02 3.28 16 27 C 0.07 1.32 3.38 -26.61 -0.09 1.23 16 28 H 0.04 0.70 8.14 -51.92 -0.42 0.28 16 29 O -0.56 -9.87 12.08 -35.23 -0.43 -10.30 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.42 7.22 -51.93 -0.38 0.04 16 32 H 0.06 0.32 6.26 -51.93 -0.33 0.00 16 33 H 0.08 0.47 6.44 -51.93 -0.33 0.14 16 34 H 0.08 0.31 7.89 -51.93 -0.41 -0.10 16 35 H 0.08 0.70 7.42 -51.93 -0.39 0.32 16 36 H 0.07 0.36 7.89 -51.93 -0.41 -0.05 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.06 0.34 6.26 -51.93 -0.33 0.02 16 40 H 0.10 0.99 7.14 -51.93 -0.37 0.62 16 41 H 0.10 0.95 7.36 -51.93 -0.38 0.56 16 42 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16 43 H 0.10 1.06 8.10 -51.93 -0.42 0.64 16 44 H 0.40 5.26 8.26 -40.82 -0.34 4.92 16 45 H 0.07 1.39 7.61 -51.93 -0.40 1.00 16 46 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 47 H 0.06 1.22 7.93 -51.93 -0.41 0.80 16 48 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.25 6.92 8.31 -40.82 -0.34 6.58 16 50 H 0.09 2.36 6.06 -51.93 -0.31 2.05 16 51 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 52 H 0.37 5.76 9.08 45.56 0.41 6.17 16 LS Contribution 409.32 15.07 6.17 6.17 Total: -1.00 -33.02 409.32 -8.16 -41.18 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -8.11 Total: 8.82 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -0.35 Total: 10.54 kcal Atomic # 7 Polarization: -55.41 SS G_CDS: -0.59 Total: -56.00 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.25 Total: -27.06 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.03 Total: 16.35 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.02 -8.16 -41.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100121461.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.394 kcal (2) G-P(sol) polarization free energy of solvation -33.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.417 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds