Wall clock time and date at job start Wed Apr 1 2020 01:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46499 * 109.47027 * 2 1 4 4 C 1.46493 * 120.00392 * 270.00368 * 3 2 1 5 5 C 1.52995 * 109.47554 * 89.99987 * 4 3 2 6 6 C 1.34779 * 119.99589 * 90.00091 * 3 2 1 7 7 O 1.21277 * 119.99777 * 179.97438 * 6 3 2 8 8 C 1.50700 * 120.00084 * 0.02562 * 6 3 2 9 9 C 1.52995 * 109.47150 * 179.97438 * 8 6 3 10 10 C 1.50700 * 109.47150 * 179.97438 * 9 8 6 11 11 O 1.21284 * 119.99950 * 0.02562 * 10 9 8 12 12 N 1.34779 * 120.00084 * 180.02562 * 10 9 8 13 13 C 1.46501 * 120.00132 * 180.02562 * 12 10 9 14 14 H 1.08998 * 109.45934 * 34.99230 * 13 12 10 15 15 C 1.53045 * 109.45391 * 275.02219 * 13 12 10 16 16 C 1.53201 * 109.30983 * 178.61516 * 15 13 12 17 17 N 1.46921 * 108.77276 * 54.63297 * 16 15 13 18 18 C 1.36945 * 120.62646 * 126.41727 * 17 16 15 19 19 H 1.08004 * 119.99579 * 331.82232 * 18 17 16 20 20 C 1.38809 * 120.00207 * 151.82569 * 18 17 16 21 21 N 1.31623 * 119.99874 * 343.06445 * 20 18 17 22 22 Si 1.86792 * 120.00085 * 163.06127 * 20 18 17 23 23 H 1.48497 * 109.47167 * 0.02562 * 22 20 18 24 24 H 1.48505 * 109.47099 * 120.00161 * 22 20 18 25 25 H 1.48511 * 109.47181 * 239.99877 * 22 20 18 26 26 C 1.46919 * 118.74471 * 306.39063 * 17 16 15 27 27 C 1.53036 * 109.46215 * 154.97371 * 13 12 10 28 28 H 1.09008 * 109.49774 * 301.33220 * 27 13 12 29 29 O 1.42897 * 109.50346 * 61.42819 * 27 13 12 30 30 H 1.09004 * 109.47019 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47057 * 299.99400 * 1 2 3 32 32 H 1.08998 * 109.47337 * 59.99646 * 1 2 3 33 33 H 1.08998 * 109.46826 * 120.00484 * 2 1 3 34 34 H 1.09001 * 109.46604 * 240.00363 * 2 1 3 35 35 H 1.08997 * 109.47071 * 210.00241 * 4 3 2 36 36 H 1.09007 * 109.47043 * 329.99894 * 4 3 2 37 37 H 1.08997 * 109.46901 * 59.99743 * 5 4 3 38 38 H 1.08993 * 109.47683 * 180.02562 * 5 4 3 39 39 H 1.09006 * 109.47262 * 300.00423 * 5 4 3 40 40 H 1.08993 * 109.47326 * 300.00192 * 8 6 3 41 41 H 1.09007 * 109.47037 * 59.99735 * 8 6 3 42 42 H 1.08995 * 109.47865 * 300.00089 * 9 8 6 43 43 H 1.09007 * 109.46945 * 60.00195 * 9 8 6 44 44 H 0.97001 * 120.00168 * 359.97438 * 12 10 9 45 45 H 1.08995 * 109.50171 * 298.56461 * 15 13 12 46 46 H 1.09000 * 109.50052 * 58.66810 * 15 13 12 47 47 H 1.08994 * 109.58603 * 174.42401 * 16 15 13 48 48 H 1.08997 * 109.58197 * 294.85000 * 16 15 13 49 49 H 0.96996 * 119.99979 * 179.97438 * 21 20 18 50 50 H 1.08996 * 109.59189 * 173.39541 * 26 17 16 51 51 H 1.08995 * 109.59086 * 293.68402 * 26 17 16 52 52 H 0.96692 * 114.00328 * 180.02562 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2686 5 6 0.9875 2.7932 -1.7103 6 6 2.2430 2.0165 1.1673 7 8 2.6476 3.1597 1.1673 8 6 1.9923 1.3058 2.4723 9 6 2.3242 2.2429 3.6353 10 6 2.0730 1.5324 4.9403 11 8 1.6688 0.3889 4.9402 12 7 2.2975 2.1678 6.1076 13 6 2.0538 1.4769 7.3763 14 1 2.3064 0.4220 7.2697 15 6 0.5771 1.6119 7.7548 16 6 0.3188 0.8593 9.0639 17 7 1.2514 1.3540 10.0857 18 6 0.7883 1.8066 11.2924 19 1 -0.2020 2.2315 11.3658 20 6 1.5915 1.7193 12.4211 21 7 2.6382 0.9213 12.4239 22 14 1.1870 2.7344 13.9361 23 1 -0.0311 3.5439 13.6788 24 1 0.9450 1.8293 15.0883 25 1 2.3253 3.6366 14.2459 26 6 2.6902 1.3535 9.7887 27 6 2.9217 2.1009 8.4715 28 1 3.9722 2.0255 8.1905 29 8 2.5685 3.4759 8.6346 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8933 -0.5139 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.0644 2.7985 -1.1383 36 1 2.5505 1.3452 -2.0284 37 1 0.6994 3.5197 -0.9505 38 1 1.1690 3.3067 -2.6544 39 1 0.1855 2.0665 -1.8406 40 1 0.9446 1.0112 2.5303 41 1 2.6229 0.4185 2.5298 42 1 3.3721 2.5372 3.5773 43 1 1.6939 3.1304 3.5780 44 1 2.6212 3.0822 6.1077 45 1 0.3300 2.6654 7.8860 46 1 -0.0415 1.1884 6.9636 47 1 -0.7066 1.0340 9.3896 48 1 0.4785 -0.2078 8.9094 49 1 3.1997 0.8605 13.2124 50 1 3.2296 1.8544 10.5925 51 1 3.0438 0.3267 9.6958 52 1 3.0803 3.9355 9.3142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100121461.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:12 Heat of formation + Delta-G solvation = -133.226481 kcal Electronic energy + Delta-G solvation = -30692.184011 eV Core-core repulsion = 26498.018708 eV Total energy + Delta-G solvation = -4194.165303 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -41.37650 -40.79534 -39.42572 -37.27825 -36.48424 -35.70781 -34.26512 -33.81424 -32.54771 -31.18851 -30.74975 -30.54010 -27.54591 -26.29712 -24.27782 -24.08004 -23.75860 -23.17972 -21.29743 -20.87595 -19.96055 -19.16938 -18.60312 -17.58564 -17.43902 -17.12968 -17.07682 -16.89885 -16.68084 -16.01521 -15.66934 -15.41935 -15.22005 -15.04129 -14.88749 -14.77302 -14.38462 -14.34132 -14.24440 -13.80103 -13.66104 -13.59868 -13.39998 -13.15581 -13.05501 -12.88393 -12.76069 -12.64608 -12.45503 -12.36387 -12.35374 -12.23679 -12.07873 -11.99077 -11.81170 -11.57353 -11.43637 -10.88942 -10.83285 -10.70734 -10.59154 -9.97899 -9.73219 -8.67108 -7.87663 -5.31920 1.46678 1.49930 1.58227 1.60187 1.65638 1.90869 2.31613 2.51723 3.25043 3.40489 3.46484 3.66283 3.81710 3.87845 4.01697 4.02124 4.08713 4.11755 4.23368 4.25166 4.36510 4.40877 4.46746 4.50937 4.57301 4.60039 4.61543 4.76950 4.81610 4.82404 4.88754 4.90235 4.93162 4.98071 5.00575 5.07747 5.08135 5.19044 5.27009 5.43728 5.44537 5.54091 5.57081 5.63705 5.65624 6.35069 6.37618 6.61421 6.91902 7.13779 7.15018 7.27884 7.82964 8.35871 9.18812 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030264 B = 0.001953 C = 0.001911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.969741 B =14334.489624 C =14646.340487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.098 3.902 3 N -0.611 5.611 4 C 0.107 3.893 5 C -0.164 4.164 6 C 0.514 3.486 7 O -0.579 6.579 8 C -0.118 4.118 9 C -0.115 4.115 10 C 0.512 3.488 11 O -0.579 6.579 12 N -0.710 5.710 13 C 0.169 3.831 14 H 0.076 0.924 15 C -0.119 4.119 16 C 0.144 3.856 17 N -0.598 5.598 18 C -0.252 4.252 19 H 0.061 0.939 20 C -0.048 4.048 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.271 1.271 24 H -0.296 1.296 25 H -0.286 1.286 26 C 0.150 3.850 27 C 0.089 3.911 28 H 0.068 0.932 29 O -0.561 6.561 30 H 0.081 0.919 31 H 0.044 0.956 32 H 0.062 0.938 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.104 0.896 37 H 0.033 0.967 38 H 0.078 0.922 39 H 0.067 0.933 40 H 0.103 0.897 41 H 0.108 0.892 42 H 0.109 0.891 43 H 0.104 0.896 44 H 0.413 0.587 45 H 0.062 0.938 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.013 0.987 49 H 0.251 0.749 50 H 0.071 0.929 51 H 0.005 0.995 52 H 0.386 0.614 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.614 0.857 -28.216 28.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.024 4.024 3 N -0.343 5.343 4 C -0.016 4.016 5 C -0.222 4.222 6 C 0.303 3.697 7 O -0.459 6.459 8 C -0.158 4.158 9 C -0.156 4.156 10 C 0.300 3.700 11 O -0.460 6.460 12 N -0.361 5.361 13 C 0.064 3.936 14 H 0.094 0.906 15 C -0.159 4.159 16 C 0.018 3.982 17 N -0.321 5.321 18 C -0.382 4.382 19 H 0.079 0.921 20 C -0.244 4.244 21 N -0.582 5.582 22 Si 0.796 3.204 23 H -0.196 1.196 24 H -0.223 1.223 25 H -0.213 1.213 26 C 0.023 3.977 27 C 0.028 3.972 28 H 0.086 0.914 29 O -0.368 6.368 30 H 0.100 0.900 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.052 0.948 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.127 0.873 43 H 0.122 0.878 44 H 0.250 0.750 45 H 0.081 0.919 46 H 0.078 0.922 47 H 0.073 0.927 48 H 0.031 0.969 49 H 0.060 0.940 50 H 0.090 0.910 51 H 0.023 0.977 52 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 0.209 0.463 -28.583 28.587 hybrid contribution 0.335 0.744 1.759 1.939 sum 0.544 1.207 -26.824 26.856 Atomic orbital electron populations 1.22268 0.95510 1.03253 1.02035 1.21860 0.94863 0.80702 1.04974 1.48169 1.65229 1.15275 1.05668 1.21556 0.98013 0.97334 0.84649 1.22148 0.98124 1.00547 1.01362 1.20874 0.76284 0.86124 0.86396 1.90678 1.47665 1.19460 1.88092 1.21377 1.05305 0.99302 0.89794 1.21316 1.05611 0.99293 0.89340 1.21077 0.76271 0.86416 0.86215 1.90678 1.47502 1.19500 1.88274 1.46040 1.67157 1.18125 1.04761 1.20685 0.95207 0.95859 0.81875 0.90640 1.22070 0.95703 1.01056 0.97094 1.20978 0.93902 0.94594 0.88701 1.44104 1.01784 1.73123 1.13124 1.19446 1.01147 1.31881 0.85741 0.92132 1.25715 0.99149 0.99633 0.99862 1.70167 1.19713 1.38655 1.29660 0.85214 0.77664 0.78208 0.79339 1.19583 1.22326 1.21256 1.21317 0.85461 0.96493 0.94412 1.22521 0.96538 0.83039 0.95078 0.91412 1.86322 1.66954 1.21836 1.61686 0.90005 0.93714 0.91895 0.89529 0.87811 0.91688 0.87804 0.94799 0.90319 0.91445 0.87877 0.87376 0.87320 0.87795 0.75022 0.91939 0.92218 0.92664 0.96937 0.94019 0.91050 0.97700 0.76550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.58 10.24 71.98 0.74 -0.84 16 2 C 0.10 0.87 5.98 86.38 0.52 1.39 16 3 N -0.61 -8.78 2.47 -821.83 -2.03 -10.82 16 4 C 0.11 1.31 6.17 86.38 0.53 1.84 16 5 C -0.16 -1.93 10.24 71.98 0.74 -1.19 16 6 C 0.51 10.34 7.67 87.66 0.67 11.01 16 7 O -0.58 -15.66 15.56 -3.02 -0.05 -15.71 16 8 C -0.12 -2.18 3.54 29.85 0.11 -2.08 16 9 C -0.12 -2.37 4.99 29.85 0.15 -2.22 16 10 C 0.51 13.84 7.79 87.66 0.68 14.52 16 11 O -0.58 -19.41 15.64 -3.04 -0.05 -19.46 16 12 N -0.71 -19.58 5.05 -442.40 -2.23 -21.82 16 13 C 0.17 5.79 2.20 45.02 0.10 5.89 16 14 H 0.08 2.86 7.58 -2.39 -0.02 2.84 16 15 C -0.12 -4.43 5.51 30.68 0.17 -4.26 16 16 C 0.14 6.30 6.52 86.37 0.56 6.86 16 17 N -0.60 -29.76 2.93 -699.12 -2.05 -31.81 16 18 C -0.25 -13.71 9.58 84.03 0.81 -12.91 16 19 H 0.06 3.29 7.89 -2.91 -0.02 3.27 16 20 C -0.05 -2.65 4.92 84.86 0.42 -2.23 16 21 N -0.94 -53.73 11.20 21.65 0.24 -53.49 16 22 Si 0.97 44.20 29.59 68.60 2.03 46.23 16 23 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 24 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.29 -12.82 7.11 99.48 0.71 -12.11 16 26 C 0.15 6.88 4.95 86.36 0.43 7.31 16 27 C 0.09 3.15 3.38 30.67 0.10 3.26 16 28 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 29 O -0.56 -18.92 12.08 -148.98 -1.80 -20.72 16 30 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.04 0.56 7.22 -2.39 -0.02 0.54 16 32 H 0.06 0.54 6.26 -2.39 -0.01 0.53 16 33 H 0.09 0.78 6.44 -2.39 -0.02 0.76 16 34 H 0.10 0.46 7.89 -2.39 -0.02 0.44 16 35 H 0.06 1.06 7.42 -2.39 -0.02 1.04 16 36 H 0.10 0.68 7.89 -2.38 -0.02 0.66 16 37 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.66 6.26 -2.38 -0.01 0.64 16 40 H 0.10 1.89 7.14 -2.39 -0.02 1.88 16 41 H 0.11 1.85 7.36 -2.38 -0.02 1.84 16 42 H 0.11 2.06 8.10 -2.39 -0.02 2.04 16 43 H 0.10 2.08 8.10 -2.38 -0.02 2.06 16 44 H 0.41 9.85 8.26 -92.71 -0.77 9.09 16 45 H 0.06 2.43 7.61 -2.39 -0.02 2.41 16 46 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 47 H 0.05 2.38 7.93 -2.39 -0.02 2.36 16 48 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 49 H 0.25 13.92 8.31 -92.71 -0.77 13.15 16 50 H 0.07 3.61 6.06 -2.39 -0.01 3.60 16 51 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 52 H 0.39 11.28 9.08 -74.06 -0.67 10.60 16 Total: -1.00 -71.41 409.32 0.27 -71.14 By element: Atomic # 1 Polarization: 30.60 SS G_CDS: -0.51 Total: 30.10 kcal Atomic # 6 Polarization: 19.64 SS G_CDS: 6.72 Total: 26.36 kcal Atomic # 7 Polarization: -111.86 SS G_CDS: -6.08 Total: -117.93 kcal Atomic # 8 Polarization: -54.00 SS G_CDS: -1.89 Total: -55.89 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -71.41 0.27 -71.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100121461.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.087 kcal (2) G-P(sol) polarization free energy of solvation -71.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds