Wall clock time and date at job start Wed Apr 1 2020 01:33:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47121 * 2 1 4 4 C 1.46501 * 120.00206 * 270.00185 * 3 2 1 5 5 C 1.53000 * 109.47170 * 269.99968 * 4 3 2 6 6 C 1.34777 * 120.00032 * 90.00201 * 3 2 1 7 7 O 1.21285 * 119.99615 * 0.02562 * 6 3 2 8 8 C 1.50691 * 120.00274 * 179.97438 * 6 3 2 9 9 C 1.53007 * 109.47379 * 179.97438 * 8 6 3 10 10 C 1.50699 * 109.46934 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00206 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99288 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99492 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.45193 * 324.96930 * 13 12 10 15 15 C 1.53045 * 109.45825 * 84.93493 * 13 12 10 16 16 C 1.53195 * 109.31158 * 181.38774 * 15 13 12 17 17 N 1.46933 * 108.77171 * 305.36214 * 16 15 13 18 18 C 1.36944 * 120.62822 * 233.63408 * 17 16 15 19 19 H 1.07996 * 119.99669 * 152.60256 * 18 17 16 20 20 C 1.38813 * 119.99656 * 332.60153 * 18 17 16 21 21 N 1.31619 * 119.99377 * 159.36155 * 20 18 17 22 22 Si 1.86792 * 120.00413 * 339.36153 * 20 18 17 23 23 H 1.48496 * 109.47417 * 92.90125 * 22 20 18 24 24 H 1.48494 * 109.47176 * 212.90503 * 22 20 18 25 25 H 1.48506 * 109.47195 * 332.90382 * 22 20 18 26 26 C 1.46927 * 118.73896 * 53.60726 * 17 16 15 27 27 C 1.53034 * 109.45763 * 204.99814 * 13 12 10 28 28 H 1.09005 * 109.50177 * 58.63684 * 27 13 12 29 29 O 1.42896 * 109.50278 * 298.56674 * 27 13 12 30 30 H 1.09000 * 109.47237 * 299.99952 * 1 2 3 31 31 H 1.09004 * 109.47654 * 59.99670 * 1 2 3 32 32 H 1.09005 * 109.47595 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47258 * 240.00734 * 2 1 3 34 34 H 1.09004 * 109.47654 * 120.00330 * 2 1 3 35 35 H 1.08995 * 109.47002 * 29.99837 * 4 3 2 36 36 H 1.09001 * 109.46966 * 149.99891 * 4 3 2 37 37 H 1.08998 * 109.47513 * 300.00048 * 5 4 3 38 38 H 1.09001 * 109.47239 * 60.00090 * 5 4 3 39 39 H 1.09000 * 109.47322 * 179.97438 * 5 4 3 40 40 H 1.09005 * 109.47253 * 59.99875 * 8 6 3 41 41 H 1.08999 * 109.47434 * 300.00210 * 8 6 3 42 42 H 1.08997 * 109.46535 * 60.00398 * 9 8 6 43 43 H 1.08999 * 109.47186 * 300.00579 * 9 8 6 44 44 H 0.96991 * 120.00286 * 0.02562 * 12 10 9 45 45 H 1.09000 * 109.49806 * 301.33294 * 15 13 12 46 46 H 1.08999 * 109.50120 * 61.43226 * 15 13 12 47 47 H 1.09000 * 109.58622 * 185.58034 * 16 15 13 48 48 H 1.08992 * 109.70821 * 65.21592 * 16 15 13 49 49 H 0.97001 * 119.99728 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.58235 * 186.60281 * 26 17 16 51 51 H 1.09002 * 109.58260 * 66.18425 * 26 17 16 52 52 H 0.96701 * 114.00612 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8315 -1.7104 6 6 2.2429 2.0166 1.1672 7 8 2.0412 1.4446 2.2175 8 6 2.7458 3.4371 1.1673 9 6 2.9151 3.9182 2.6098 10 6 3.4186 5.3386 2.6098 11 8 3.6215 5.9100 1.5595 12 7 3.6433 5.9738 3.7771 13 6 4.1323 7.3549 3.7771 14 1 4.8096 7.5001 2.9356 15 6 2.9474 8.3152 3.6495 16 6 3.4650 9.7566 3.6150 17 7 4.3033 9.9865 4.7996 18 6 4.0514 11.0388 5.6390 19 1 4.3311 10.9778 6.6803 20 6 3.4364 12.1837 5.1514 21 7 2.8313 13.0090 5.9791 22 14 3.4676 12.5532 3.3206 23 1 2.2459 12.0000 2.6831 24 1 3.5122 14.0228 3.1129 25 1 4.6697 11.9303 2.7103 26 6 5.4166 9.0656 5.0668 27 6 4.8771 7.6320 5.0849 28 1 5.7065 6.9320 5.1867 29 8 3.9812 7.4734 6.1869 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 1.5816 1.6878 -2.0283 36 1 2.0954 3.1411 -1.1383 37 1 4.3883 2.2156 -0.9508 38 1 3.8744 0.7623 -1.8408 39 1 3.8889 2.3450 -2.6546 40 1 2.0281 4.0766 0.6532 41 1 3.7061 3.4827 0.6536 42 1 3.6326 3.2788 3.1241 43 1 1.9546 3.8727 3.1231 44 1 3.4814 5.5167 4.6170 45 1 2.4036 8.1018 2.7293 46 1 2.2822 8.1878 4.5036 47 1 2.6222 10.4478 3.6241 48 1 4.0564 9.9133 2.7130 49 1 2.4019 13.8093 5.6384 50 1 5.8614 9.3010 6.0337 51 1 6.1678 9.1636 4.2831 52 1 4.3869 7.6338 7.0499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100121462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:17 Heat of formation + Delta-G solvation = -103.290898 kcal Electronic energy + Delta-G solvation = -30767.964374 eV Core-core repulsion = 26575.097175 eV Total energy + Delta-G solvation = -4192.867199 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.51611 -39.76728 -38.20486 -36.57378 -35.14487 -34.41479 -33.48352 -32.23459 -31.83633 -30.27309 -29.84004 -29.32384 -26.35184 -24.72745 -23.99686 -22.95792 -22.78377 -21.79777 -20.18021 -19.66296 -19.14779 -17.82544 -17.14268 -16.88233 -16.43333 -16.35596 -16.04375 -15.90989 -15.09811 -14.87169 -14.39091 -14.32666 -14.30024 -14.15611 -14.08969 -13.74703 -13.35594 -13.29848 -13.06506 -12.90893 -12.67540 -12.57074 -12.34247 -12.21091 -12.04069 -11.95446 -11.90772 -11.68786 -11.45428 -11.37816 -11.27807 -11.08652 -10.83882 -10.24740 -10.15692 -10.06164 -10.03442 -9.71157 -9.57732 -9.47659 -9.10415 -8.77961 -8.56562 -6.96822 -5.94169 -3.29771 2.34155 2.56669 2.71859 3.30769 3.35416 3.50384 3.53389 4.18348 4.44568 4.54125 4.57039 4.58229 4.67263 4.75145 4.80070 4.89228 4.92802 4.98210 5.02566 5.03689 5.15682 5.20544 5.26925 5.34186 5.38824 5.41742 5.43465 5.54596 5.57876 5.62595 5.68036 5.74943 5.77676 5.80932 5.97672 6.12807 6.17614 6.25867 6.29206 6.41019 6.48660 6.66544 6.74967 6.98518 6.99314 7.65797 7.85995 7.91786 8.06036 8.31880 8.33128 8.92255 9.71838 10.08210 11.21626 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020184 B = 0.002182 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.886889 B =12831.313031 C =13344.512466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.616 5.616 4 C 0.101 3.899 5 C -0.173 4.173 6 C 0.516 3.484 7 O -0.540 6.540 8 C -0.124 4.124 9 C -0.125 4.125 10 C 0.510 3.490 11 O -0.548 6.548 12 N -0.718 5.718 13 C 0.161 3.839 14 H 0.091 0.909 15 C -0.137 4.137 16 C 0.129 3.871 17 N -0.596 5.596 18 C -0.256 4.256 19 H 0.084 0.916 20 C 0.023 3.977 21 N -0.908 5.908 22 Si 0.882 3.118 23 H -0.288 1.288 24 H -0.303 1.303 25 H -0.271 1.271 26 C 0.121 3.879 27 C 0.081 3.919 28 H 0.050 0.950 29 O -0.553 6.553 30 H 0.060 0.940 31 H 0.055 0.945 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.069 0.931 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.404 0.596 45 H 0.055 0.945 46 H 0.076 0.924 47 H 0.075 0.925 48 H 0.026 0.974 49 H 0.262 0.738 50 H 0.071 0.929 51 H 0.032 0.968 52 H 0.376 0.624 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.711 -26.084 -12.707 29.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.350 5.350 4 C -0.022 4.022 5 C -0.231 4.231 6 C 0.305 3.695 7 O -0.417 6.417 8 C -0.164 4.164 9 C -0.166 4.166 10 C 0.296 3.704 11 O -0.427 6.427 12 N -0.368 5.368 13 C 0.057 3.943 14 H 0.109 0.891 15 C -0.177 4.177 16 C 0.003 3.997 17 N -0.319 5.319 18 C -0.384 4.384 19 H 0.102 0.898 20 C -0.176 4.176 21 N -0.551 5.551 22 Si 0.713 3.287 23 H -0.216 1.216 24 H -0.232 1.232 25 H -0.196 1.196 26 C -0.006 4.006 27 C 0.020 3.980 28 H 0.068 0.932 29 O -0.358 6.358 30 H 0.079 0.921 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.088 0.912 40 H 0.120 0.880 41 H 0.119 0.881 42 H 0.117 0.883 43 H 0.118 0.882 44 H 0.239 0.761 45 H 0.074 0.926 46 H 0.095 0.905 47 H 0.093 0.907 48 H 0.044 0.956 49 H 0.072 0.928 50 H 0.089 0.911 51 H 0.050 0.950 52 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 0.255 -25.937 -13.339 29.167 hybrid contribution 0.229 0.266 -0.316 0.472 sum 0.484 -25.670 -13.655 29.080 Atomic orbital electron populations 1.22129 0.95848 1.02221 1.02409 1.21404 0.94422 0.82352 1.03026 1.48071 1.66302 1.14371 1.06244 1.21635 0.97046 0.98235 0.85241 1.22215 0.96556 1.02273 1.02044 1.20792 0.76850 0.88739 0.83150 1.90699 1.51974 1.68134 1.30933 1.21429 1.04143 0.92495 0.98298 1.21376 1.04265 0.93390 0.97561 1.20607 0.77509 0.88255 0.83985 1.90692 1.52278 1.68440 1.31243 1.46154 1.67147 1.14968 1.08548 1.20968 0.96554 0.80224 0.96562 0.89090 1.22307 0.97580 0.96167 1.01667 1.21339 0.94773 0.94142 0.89494 1.44199 1.29760 1.30122 1.27859 1.18848 1.36918 0.91375 0.91275 0.89814 1.25258 0.98902 0.96176 0.97272 1.69840 1.36168 1.14570 1.34475 0.86962 0.78244 0.76113 0.87410 1.21599 1.23177 1.19560 1.21579 0.90332 0.88449 1.00260 1.22578 0.91044 0.97809 0.86595 0.93233 1.86448 1.40132 1.92804 1.16452 0.92119 0.92624 0.91621 0.90720 0.89880 0.90234 0.89680 0.92101 0.92396 0.91163 0.88048 0.88067 0.88341 0.88195 0.76148 0.92597 0.90549 0.90675 0.95617 0.92791 0.91079 0.95045 0.77729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.08 10.24 37.15 0.38 -0.70 16 2 C 0.11 0.76 6.13 -4.04 -0.02 0.73 16 3 N -0.62 -4.82 2.47 -173.69 -0.43 -5.25 16 4 C 0.10 0.56 5.93 -4.04 -0.02 0.54 16 5 C -0.17 -0.89 10.24 37.16 0.38 -0.50 16 6 C 0.52 5.31 7.67 -10.99 -0.08 5.22 16 7 O -0.54 -7.27 15.56 5.55 0.09 -7.18 16 8 C -0.12 -1.18 3.54 -27.88 -0.10 -1.28 16 9 C -0.13 -1.32 4.99 -27.88 -0.14 -1.46 16 10 C 0.51 6.92 7.79 -10.98 -0.09 6.83 16 11 O -0.55 -9.16 15.64 5.56 0.09 -9.08 16 12 N -0.72 -9.77 5.05 -53.77 -0.27 -10.05 16 13 C 0.16 2.63 2.20 -67.89 -0.15 2.48 16 14 H 0.09 1.58 7.58 -51.93 -0.39 1.18 16 15 C -0.14 -2.64 5.51 -26.61 -0.15 -2.79 16 16 C 0.13 2.90 4.21 -3.71 -0.02 2.88 16 17 N -0.60 -13.91 2.71 -172.31 -0.47 -14.38 16 18 C -0.26 -7.05 10.04 -15.06 -0.15 -7.20 16 19 H 0.08 2.44 8.06 -52.49 -0.42 2.01 16 20 C 0.02 0.66 5.23 -17.43 -0.09 0.57 16 21 N -0.91 -27.88 13.97 55.49 0.78 -27.11 16 22 Si 0.88 22.69 24.34 -169.99 -4.14 18.55 16 23 H -0.29 -7.25 6.62 56.52 0.37 -6.88 16 24 H -0.30 -7.92 7.11 56.52 0.40 -7.52 16 25 H -0.27 -6.83 6.64 56.52 0.38 -6.45 16 26 C 0.12 2.24 6.16 -3.71 -0.02 2.21 16 27 C 0.08 1.25 3.38 -26.61 -0.09 1.16 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 29 O -0.55 -8.66 12.09 -35.23 -0.43 -9.08 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 33 H 0.07 0.35 8.07 -51.93 -0.42 -0.06 16 34 H 0.08 0.69 7.42 -51.93 -0.39 0.30 16 35 H 0.08 0.32 8.07 -51.93 -0.42 -0.10 16 36 H 0.08 0.47 6.44 -51.93 -0.33 0.14 16 37 H 0.06 0.38 7.22 -51.93 -0.37 0.00 16 38 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.10 0.95 7.36 -51.93 -0.38 0.57 16 41 H 0.10 0.92 7.14 -51.93 -0.37 0.55 16 42 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 43 H 0.10 1.04 8.10 -51.93 -0.42 0.62 16 44 H 0.40 4.81 8.25 -40.82 -0.34 4.47 16 45 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 46 H 0.08 1.58 7.61 -51.93 -0.40 1.18 16 47 H 0.08 1.87 4.50 -51.93 -0.23 1.63 16 48 H 0.03 0.58 7.07 -51.93 -0.37 0.21 16 49 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 50 H 0.07 1.25 7.93 -51.93 -0.41 0.84 16 51 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.38 4.71 9.08 45.56 0.41 5.13 16 LS Contribution 406.90 15.07 6.13 6.13 Total: -1.00 -35.14 406.90 -7.26 -42.40 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -8.25 Total: 6.34 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -0.36 Total: 8.69 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.39 Total: -56.78 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: -0.25 Total: -25.34 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -4.14 Total: 18.55 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -35.14 -7.26 -42.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100121462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.893 kcal (2) G-P(sol) polarization free energy of solvation -35.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds