Wall clock time and date at job start Wed Apr 1 2020 01:33:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46503 * 109.47121 * 2 1 4 4 C 1.46501 * 120.00206 * 270.00185 * 3 2 1 5 5 C 1.53000 * 109.47170 * 269.99968 * 4 3 2 6 6 C 1.34777 * 120.00032 * 90.00201 * 3 2 1 7 7 O 1.21285 * 119.99615 * 0.02562 * 6 3 2 8 8 C 1.50691 * 120.00274 * 179.97438 * 6 3 2 9 9 C 1.53007 * 109.47379 * 179.97438 * 8 6 3 10 10 C 1.50699 * 109.46934 * 179.97438 * 9 8 6 11 11 O 1.21278 * 120.00206 * 0.02562 * 10 9 8 12 12 N 1.34783 * 119.99288 * 180.02562 * 10 9 8 13 13 C 1.46503 * 119.99492 * 180.02562 * 12 10 9 14 14 H 1.08995 * 109.45193 * 324.96930 * 13 12 10 15 15 C 1.53045 * 109.45825 * 84.93493 * 13 12 10 16 16 C 1.53195 * 109.31158 * 181.38774 * 15 13 12 17 17 N 1.46933 * 108.77171 * 305.36214 * 16 15 13 18 18 C 1.36944 * 120.62822 * 233.63408 * 17 16 15 19 19 H 1.07996 * 119.99669 * 152.60256 * 18 17 16 20 20 C 1.38813 * 119.99656 * 332.60153 * 18 17 16 21 21 N 1.31619 * 119.99377 * 159.36155 * 20 18 17 22 22 Si 1.86792 * 120.00413 * 339.36153 * 20 18 17 23 23 H 1.48496 * 109.47417 * 92.90125 * 22 20 18 24 24 H 1.48494 * 109.47176 * 212.90503 * 22 20 18 25 25 H 1.48506 * 109.47195 * 332.90382 * 22 20 18 26 26 C 1.46927 * 118.73896 * 53.60726 * 17 16 15 27 27 C 1.53034 * 109.45763 * 204.99814 * 13 12 10 28 28 H 1.09005 * 109.50177 * 58.63684 * 27 13 12 29 29 O 1.42896 * 109.50278 * 298.56674 * 27 13 12 30 30 H 1.09000 * 109.47237 * 299.99952 * 1 2 3 31 31 H 1.09004 * 109.47654 * 59.99670 * 1 2 3 32 32 H 1.09005 * 109.47595 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47258 * 240.00734 * 2 1 3 34 34 H 1.09004 * 109.47654 * 120.00330 * 2 1 3 35 35 H 1.08995 * 109.47002 * 29.99837 * 4 3 2 36 36 H 1.09001 * 109.46966 * 149.99891 * 4 3 2 37 37 H 1.08998 * 109.47513 * 300.00048 * 5 4 3 38 38 H 1.09001 * 109.47239 * 60.00090 * 5 4 3 39 39 H 1.09000 * 109.47322 * 179.97438 * 5 4 3 40 40 H 1.09005 * 109.47253 * 59.99875 * 8 6 3 41 41 H 1.08999 * 109.47434 * 300.00210 * 8 6 3 42 42 H 1.08997 * 109.46535 * 60.00398 * 9 8 6 43 43 H 1.08999 * 109.47186 * 300.00579 * 9 8 6 44 44 H 0.96991 * 120.00286 * 0.02562 * 12 10 9 45 45 H 1.09000 * 109.49806 * 301.33294 * 15 13 12 46 46 H 1.08999 * 109.50120 * 61.43226 * 15 13 12 47 47 H 1.09000 * 109.58622 * 185.58034 * 16 15 13 48 48 H 1.08992 * 109.70821 * 65.21592 * 16 15 13 49 49 H 0.97001 * 119.99728 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.58235 * 186.60281 * 26 17 16 51 51 H 1.09002 * 109.58260 * 66.18425 * 26 17 16 52 52 H 0.96701 * 114.00612 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.7074 1.8315 -1.7104 6 6 2.2429 2.0166 1.1672 7 8 2.0412 1.4446 2.2175 8 6 2.7458 3.4371 1.1673 9 6 2.9151 3.9182 2.6098 10 6 3.4186 5.3386 2.6098 11 8 3.6215 5.9100 1.5595 12 7 3.6433 5.9738 3.7771 13 6 4.1323 7.3549 3.7771 14 1 4.8096 7.5001 2.9356 15 6 2.9474 8.3152 3.6495 16 6 3.4650 9.7566 3.6150 17 7 4.3033 9.9865 4.7996 18 6 4.0514 11.0388 5.6390 19 1 4.3311 10.9778 6.6803 20 6 3.4364 12.1837 5.1514 21 7 2.8313 13.0090 5.9791 22 14 3.4676 12.5532 3.3206 23 1 2.2459 12.0000 2.6831 24 1 3.5122 14.0228 3.1129 25 1 4.6697 11.9303 2.7103 26 6 5.4166 9.0656 5.0668 27 6 4.8771 7.6320 5.0849 28 1 5.7065 6.9320 5.1867 29 8 3.9812 7.4734 6.1869 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 1.8934 -0.5139 0.8900 35 1 1.5816 1.6878 -2.0283 36 1 2.0954 3.1411 -1.1383 37 1 4.3883 2.2156 -0.9508 38 1 3.8744 0.7623 -1.8408 39 1 3.8889 2.3450 -2.6546 40 1 2.0281 4.0766 0.6532 41 1 3.7061 3.4827 0.6536 42 1 3.6326 3.2788 3.1241 43 1 1.9546 3.8727 3.1231 44 1 3.4814 5.5167 4.6170 45 1 2.4036 8.1018 2.7293 46 1 2.2822 8.1878 4.5036 47 1 2.6222 10.4478 3.6241 48 1 4.0564 9.9133 2.7130 49 1 2.4019 13.8093 5.6384 50 1 5.8614 9.3010 6.0337 51 1 6.1678 9.1636 4.2831 52 1 4.3869 7.6338 7.0499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100121462.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:16 Heat of formation + Delta-G solvation = -130.460389 kcal Electronic energy + Delta-G solvation = -30769.142531 eV Core-core repulsion = 26575.097175 eV Total energy + Delta-G solvation = -4194.045357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.40218 -40.84172 -39.55351 -37.25591 -36.72977 -35.69173 -34.28938 -33.88999 -32.76197 -31.79745 -30.87907 -30.38865 -27.54544 -26.16365 -24.47415 -24.35583 -23.95196 -23.18412 -21.37816 -20.99507 -19.83883 -19.06450 -18.56919 -17.77795 -17.58633 -17.48004 -17.29547 -16.87611 -16.58589 -16.01804 -15.88765 -15.68439 -15.23428 -15.17860 -14.84422 -14.77519 -14.71256 -14.41653 -14.10818 -13.93943 -13.84320 -13.62209 -13.49900 -13.41367 -13.13920 -13.10081 -12.82065 -12.73371 -12.55390 -12.44455 -12.30355 -12.15051 -11.91992 -11.88616 -11.87345 -11.72394 -11.41562 -11.08684 -10.89993 -10.85004 -10.57204 -10.01003 -9.73129 -8.90860 -8.15926 -5.46136 1.29715 1.39324 1.47795 1.57435 1.63608 1.88933 2.29025 2.41569 3.01831 3.29050 3.39789 3.49698 3.77715 3.81301 3.94499 4.01103 4.04715 4.10236 4.19644 4.20405 4.23185 4.25443 4.43822 4.45208 4.50313 4.57855 4.59435 4.64227 4.75233 4.78098 4.80859 4.83101 4.90489 4.92062 4.94553 4.96639 5.00110 5.00738 5.03273 5.27017 5.36491 5.36917 5.50903 5.61732 5.86316 6.13192 6.34112 6.59174 6.86368 7.00268 7.12545 7.26214 7.61736 8.02440 9.03675 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020184 B = 0.002182 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.886889 B =12831.313031 C =13344.512466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.107 3.893 3 N -0.611 5.611 4 C 0.097 3.903 5 C -0.169 4.169 6 C 0.513 3.487 7 O -0.579 6.579 8 C -0.118 4.118 9 C -0.116 4.116 10 C 0.513 3.487 11 O -0.578 6.578 12 N -0.710 5.710 13 C 0.165 3.835 14 H 0.087 0.913 15 C -0.125 4.125 16 C 0.125 3.875 17 N -0.609 5.609 18 C -0.235 4.235 19 H 0.060 0.940 20 C -0.037 4.037 21 N -0.956 5.956 22 Si 0.939 3.061 23 H -0.284 1.284 24 H -0.311 1.311 25 H -0.261 1.261 26 C 0.112 3.888 27 C 0.094 3.906 28 H 0.091 0.909 29 O -0.567 6.567 30 H 0.034 0.966 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.102 0.898 34 H 0.065 0.935 35 H 0.100 0.900 36 H 0.085 0.915 37 H 0.047 0.953 38 H 0.061 0.939 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.415 0.585 45 H 0.056 0.944 46 H 0.060 0.940 47 H 0.047 0.953 48 H 0.031 0.969 49 H 0.260 0.740 50 H 0.077 0.923 51 H 0.046 0.954 52 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.600 -28.659 -14.581 32.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.015 4.015 3 N -0.344 5.344 4 C -0.025 4.025 5 C -0.227 4.227 6 C 0.303 3.697 7 O -0.459 6.459 8 C -0.158 4.158 9 C -0.156 4.156 10 C 0.301 3.699 11 O -0.459 6.459 12 N -0.360 5.360 13 C 0.060 3.940 14 H 0.105 0.895 15 C -0.165 4.165 16 C 0.000 4.000 17 N -0.333 5.333 18 C -0.365 4.365 19 H 0.078 0.922 20 C -0.232 4.232 21 N -0.602 5.602 22 Si 0.769 3.231 23 H -0.211 1.211 24 H -0.240 1.240 25 H -0.185 1.185 26 C -0.014 4.014 27 C 0.033 3.967 28 H 0.108 0.892 29 O -0.374 6.374 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.098 0.902 33 H 0.120 0.880 34 H 0.083 0.917 35 H 0.118 0.882 36 H 0.103 0.897 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.100 0.900 40 H 0.121 0.879 41 H 0.126 0.874 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.251 0.749 45 H 0.075 0.925 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.048 0.952 49 H 0.069 0.931 50 H 0.095 0.905 51 H 0.064 0.936 52 H 0.239 0.761 Dipole moment (debyes) X Y Z Total from point charges 1.171 -28.580 -15.242 32.411 hybrid contribution -0.028 0.964 0.282 1.005 sum 1.142 -27.615 -14.960 31.428 Atomic orbital electron populations 1.22081 0.95491 1.02940 1.01554 1.21524 0.94685 0.81849 1.03464 1.48181 1.65070 1.14728 1.06394 1.21832 0.97900 0.98203 0.84546 1.22182 0.95793 1.02607 1.02155 1.20889 0.76623 0.88874 0.83339 1.90681 1.53929 1.68951 1.32341 1.21381 1.04506 0.92157 0.97772 1.21318 1.04484 0.91351 0.98460 1.21056 0.76549 0.89050 0.83273 1.90682 1.53544 1.69342 1.32298 1.45995 1.66941 1.13812 1.09296 1.20754 0.95160 0.80940 0.97137 0.89468 1.22108 0.98495 0.94987 1.00936 1.21299 0.93872 0.95577 0.89286 1.44301 1.31601 1.29934 1.27451 1.18846 1.34566 0.92143 0.90920 0.92237 1.25844 0.99831 0.96667 1.00810 1.69958 1.38535 1.15516 1.36219 0.86022 0.78634 0.75282 0.83158 1.21117 1.23961 1.18499 1.21889 0.89251 0.89193 1.01021 1.22433 0.91780 0.96340 0.86102 0.89154 1.86419 1.40933 1.92698 1.17370 0.94696 0.91606 0.90204 0.88019 0.91668 0.88154 0.89688 0.93380 0.92026 0.89980 0.87866 0.87440 0.87149 0.87907 0.74874 0.92512 0.92165 0.93471 0.95160 0.93125 0.90481 0.93618 0.76081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.86 10.24 71.98 0.74 -1.12 16 2 C 0.11 1.29 6.13 86.38 0.53 1.82 16 3 N -0.61 -8.56 2.47 -821.82 -2.03 -10.60 16 4 C 0.10 0.84 5.93 86.38 0.51 1.35 16 5 C -0.17 -1.35 10.24 71.98 0.74 -0.61 16 6 C 0.51 10.01 7.67 87.65 0.67 10.68 16 7 O -0.58 -15.29 15.56 -3.04 -0.05 -15.34 16 8 C -0.12 -2.08 3.54 29.85 0.11 -1.98 16 9 C -0.12 -2.23 4.99 29.85 0.15 -2.08 16 10 C 0.51 12.83 7.79 87.66 0.68 13.52 16 11 O -0.58 -18.27 15.64 -3.02 -0.05 -18.32 16 12 N -0.71 -17.53 5.05 -442.40 -2.23 -19.77 16 13 C 0.17 5.01 2.20 45.02 0.10 5.10 16 14 H 0.09 2.78 7.58 -2.39 -0.02 2.77 16 15 C -0.12 -4.67 5.51 30.67 0.17 -4.50 16 16 C 0.13 5.55 4.21 86.36 0.36 5.91 16 17 N -0.61 -27.87 2.71 -699.07 -1.89 -29.77 16 18 C -0.24 -13.06 10.04 84.03 0.84 -12.22 16 19 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 20 C -0.04 -2.18 5.23 84.86 0.44 -1.73 16 21 N -0.96 -60.43 13.97 21.65 0.30 -60.13 16 22 Si 0.94 47.64 24.34 68.60 1.67 49.31 16 23 H -0.28 -14.01 6.62 99.48 0.66 -13.35 16 24 H -0.31 -15.96 7.11 99.48 0.71 -15.25 16 25 H -0.26 -12.60 6.64 99.48 0.66 -11.94 16 26 C 0.11 3.88 6.16 86.36 0.53 4.41 16 27 C 0.09 2.61 3.38 30.67 0.10 2.71 16 28 H 0.09 1.88 8.14 -2.38 -0.02 1.86 16 29 O -0.57 -16.35 12.09 -148.98 -1.80 -18.15 16 30 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 32 H 0.08 0.68 8.14 -2.38 -0.02 0.66 16 33 H 0.10 0.68 8.07 -2.38 -0.02 0.66 16 34 H 0.06 1.04 7.42 -2.38 -0.02 1.02 16 35 H 0.10 0.49 8.07 -2.39 -0.02 0.47 16 36 H 0.08 0.77 6.44 -2.39 -0.02 0.75 16 37 H 0.05 0.51 7.22 -2.39 -0.02 0.50 16 38 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 39 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 40 H 0.10 1.79 7.36 -2.38 -0.02 1.77 16 41 H 0.11 1.77 7.14 -2.39 -0.02 1.75 16 42 H 0.11 1.90 8.10 -2.39 -0.02 1.88 16 43 H 0.10 1.97 8.10 -2.39 -0.02 1.95 16 44 H 0.41 8.68 8.25 -92.71 -0.77 7.91 16 45 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 46 H 0.06 2.44 7.61 -2.39 -0.02 2.42 16 47 H 0.05 2.34 4.50 -2.39 -0.01 2.33 16 48 H 0.03 1.32 7.07 -2.39 -0.02 1.30 16 49 H 0.26 15.72 8.31 -92.71 -0.77 14.95 16 50 H 0.08 2.56 7.93 -2.39 -0.02 2.54 16 51 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 52 H 0.39 8.83 9.08 -74.06 -0.67 8.16 16 Total: -1.00 -77.28 406.90 -0.01 -77.29 By element: Atomic # 1 Polarization: 24.81 SS G_CDS: -0.61 Total: 24.20 kcal Atomic # 6 Polarization: 14.59 SS G_CDS: 6.68 Total: 21.27 kcal Atomic # 7 Polarization: -114.40 SS G_CDS: -5.86 Total: -120.26 kcal Atomic # 8 Polarization: -49.91 SS G_CDS: -1.90 Total: -51.81 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.67 Total: 49.31 kcal Total: -77.28 -0.01 -77.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100121462.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.170 kcal (2) G-P(sol) polarization free energy of solvation -77.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds