Wall clock time and date at job start Wed Apr 1 2020 01:33:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47402 * 2 1 4 4 C 1.46500 * 120.00295 * 89.99953 * 3 2 1 5 5 C 1.52992 * 109.47027 * 90.00258 * 4 3 2 6 6 C 1.34781 * 119.99671 * 270.00305 * 3 2 1 7 7 O 1.21276 * 120.00150 * 359.97438 * 6 3 2 8 8 C 1.50704 * 119.99821 * 179.97438 * 6 3 2 9 9 C 1.53005 * 109.46941 * 179.97438 * 8 6 3 10 10 C 1.50695 * 109.46877 * 179.97438 * 9 8 6 11 11 O 1.21292 * 120.00283 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00129 * 180.02562 * 10 9 8 13 13 C 1.46508 * 120.00361 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.45852 * 325.02980 * 13 12 10 15 15 C 1.53046 * 109.45655 * 85.00019 * 13 12 10 16 16 C 1.53188 * 109.30891 * 181.38733 * 15 13 12 17 17 N 1.46928 * 108.77693 * 305.36413 * 16 15 13 18 18 C 1.36937 * 120.62866 * 233.59101 * 17 16 15 19 19 H 1.07999 * 120.00017 * 151.83184 * 18 17 16 20 20 C 1.38812 * 120.00099 * 331.82124 * 18 17 16 21 21 N 1.31616 * 120.00069 * 343.09417 * 20 18 17 22 22 Si 1.86799 * 120.00029 * 163.08950 * 20 18 17 23 23 H 1.48498 * 109.47111 * 60.00080 * 22 20 18 24 24 H 1.48495 * 109.47056 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47190 * 300.00558 * 22 20 18 26 26 C 1.46930 * 118.73893 * 53.60714 * 17 16 15 27 27 C 1.53039 * 109.46028 * 205.06702 * 13 12 10 28 28 H 1.09000 * 109.49818 * 298.56785 * 27 13 12 29 29 O 1.42896 * 109.49689 * 58.66216 * 27 13 12 30 30 H 1.09003 * 109.47095 * 59.99993 * 1 2 3 31 31 H 1.08997 * 109.47104 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46940 * 299.99922 * 1 2 3 33 33 H 1.09000 * 109.47358 * 239.99750 * 2 1 3 34 34 H 1.09003 * 109.47095 * 120.00006 * 2 1 3 35 35 H 1.09003 * 109.47153 * 210.00237 * 4 3 2 36 36 H 1.08996 * 109.46667 * 329.99919 * 4 3 2 37 37 H 1.08996 * 109.47673 * 60.00277 * 5 4 3 38 38 H 1.09005 * 109.47284 * 180.02562 * 5 4 3 39 39 H 1.09003 * 109.47137 * 299.99989 * 5 4 3 40 40 H 1.08992 * 109.46771 * 300.00000 * 8 6 3 41 41 H 1.08998 * 109.46953 * 59.99765 * 8 6 3 42 42 H 1.08997 * 109.47002 * 299.99988 * 9 8 6 43 43 H 1.09002 * 109.46841 * 59.99928 * 9 8 6 44 44 H 0.97005 * 120.00086 * 359.97438 * 12 10 9 45 45 H 1.09000 * 109.49825 * 301.33520 * 15 13 12 46 46 H 1.09000 * 109.49981 * 61.43505 * 15 13 12 47 47 H 1.09005 * 109.58764 * 65.15188 * 16 15 13 48 48 H 1.08999 * 109.58990 * 185.57707 * 16 15 13 49 49 H 0.96995 * 120.00342 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.58318 * 66.17958 * 26 17 16 51 51 H 1.09001 * 109.58446 * 186.46144 * 26 17 16 52 52 H 0.96704 * 114.00002 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.7075 1.8314 1.7103 6 6 2.2430 2.0165 -1.1673 7 8 2.0412 1.4446 -2.2175 8 6 2.7448 3.4375 -1.1673 9 6 2.9155 3.9180 -2.6099 10 6 3.4167 5.3392 -2.6099 11 8 3.6181 5.9113 -1.5595 12 7 3.6412 5.9746 -3.7771 13 6 4.1280 7.3564 -3.7771 14 1 3.6926 7.8948 -2.9353 15 6 5.6532 7.3596 -3.6506 16 6 6.1556 8.8064 -3.6162 17 7 5.6468 9.5120 -4.8002 18 6 6.5029 10.1736 -5.6396 19 1 6.2522 10.2914 -6.6834 20 6 7.6929 10.6931 -5.1486 21 7 7.8563 10.8523 -3.8524 22 14 9.0624 11.1661 -6.3277 23 1 8.5726 12.2118 -7.2614 24 1 10.2187 11.6911 -5.5582 25 1 9.4846 9.9707 -7.1010 26 6 4.2019 9.4946 -5.0664 27 6 3.7214 8.0401 -5.0846 28 1 4.1766 7.5170 -5.9255 29 8 2.2989 8.0093 -5.2165 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0956 3.1411 1.1383 36 1 1.5817 1.6878 2.0283 37 1 4.3884 2.2155 0.9507 38 1 3.8891 2.3449 2.6545 39 1 3.8745 0.7622 1.8407 40 1 2.0266 4.0764 -0.6537 41 1 3.7049 3.4837 -0.6533 42 1 3.6339 3.2789 -3.1231 43 1 1.9556 3.8717 -3.1242 44 1 3.4805 5.5170 -4.6172 45 1 5.9430 6.8519 -2.7307 46 1 6.0903 6.8430 -4.5051 47 1 5.7922 9.2980 -2.7137 48 1 7.2455 8.8151 -3.6259 49 1 8.6879 11.2149 -3.5093 50 1 3.6793 10.0423 -4.2822 51 1 4.0026 9.9596 -6.0319 52 1 1.9697 8.4266 -6.0244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001100121463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:21 Heat of formation + Delta-G solvation = -111.976915 kcal Electronic energy + Delta-G solvation = -30561.426126 eV Core-core repulsion = 26368.182273 eV Total energy + Delta-G solvation = -4193.243853 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.43401 -39.60525 -37.94619 -36.51232 -35.40087 -34.29944 -33.39852 -32.18699 -31.76374 -30.07808 -29.72243 -28.56270 -26.23980 -24.80311 -23.93597 -22.97450 -22.32439 -21.67649 -20.10192 -19.41208 -19.07914 -17.76363 -17.10903 -16.80671 -16.56900 -16.28905 -16.03539 -15.72419 -15.00780 -14.82747 -14.34181 -14.23138 -14.09030 -13.95409 -13.74878 -13.53341 -13.34912 -13.12949 -12.99939 -12.74895 -12.63409 -12.50087 -12.25712 -12.12986 -12.03010 -11.91524 -11.60168 -11.56311 -11.33529 -11.18731 -11.10753 -10.86358 -10.67468 -10.34250 -10.27221 -9.99604 -9.95085 -9.79523 -9.69712 -9.38699 -9.04671 -8.72261 -8.44653 -6.77153 -5.85328 -3.29918 2.40550 2.63186 2.87879 3.34482 3.41102 3.41512 3.44399 4.25574 4.37604 4.51054 4.53302 4.65676 4.73492 4.81858 4.87779 4.98265 5.03275 5.08755 5.11219 5.26053 5.30535 5.33080 5.41869 5.44613 5.48278 5.52137 5.56997 5.58845 5.70886 5.76221 5.78534 5.83774 5.86839 5.98191 6.12660 6.23332 6.33871 6.48768 6.54247 6.66923 6.77300 6.89547 7.05173 7.28786 7.59875 7.72224 7.77842 7.92247 7.92703 8.37507 8.47968 9.12782 9.75055 10.31222 11.23222 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.002059 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.336845 B =13596.317592 C =14311.601944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.110 3.890 3 N -0.616 5.616 4 C 0.102 3.898 5 C -0.173 4.173 6 C 0.516 3.484 7 O -0.541 6.541 8 C -0.123 4.123 9 C -0.125 4.125 10 C 0.512 3.488 11 O -0.547 6.547 12 N -0.716 5.716 13 C 0.163 3.837 14 H 0.087 0.913 15 C -0.146 4.146 16 C 0.171 3.829 17 N -0.588 5.588 18 C -0.260 4.260 19 H 0.066 0.934 20 C 0.005 3.995 21 N -0.899 5.899 22 Si 0.905 3.095 23 H -0.282 1.282 24 H -0.290 1.290 25 H -0.283 1.283 26 C 0.121 3.879 27 C 0.079 3.921 28 H 0.056 0.944 29 O -0.571 6.571 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.098 0.902 43 H 0.098 0.902 44 H 0.397 0.603 45 H 0.062 0.938 46 H 0.057 0.943 47 H 0.024 0.976 48 H 0.093 0.907 49 H 0.256 0.744 50 H 0.028 0.972 51 H 0.060 0.940 52 H 0.373 0.627 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.610 -19.729 7.828 24.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.012 4.012 3 N -0.350 5.350 4 C -0.021 4.021 5 C -0.231 4.231 6 C 0.305 3.695 7 O -0.418 6.418 8 C -0.163 4.163 9 C -0.165 4.165 10 C 0.298 3.702 11 O -0.425 6.425 12 N -0.365 5.365 13 C 0.059 3.941 14 H 0.105 0.895 15 C -0.187 4.187 16 C 0.045 3.955 17 N -0.312 5.312 18 C -0.389 4.389 19 H 0.084 0.916 20 C -0.194 4.194 21 N -0.543 5.543 22 Si 0.735 3.265 23 H -0.208 1.208 24 H -0.216 1.216 25 H -0.209 1.209 26 C -0.007 4.007 27 C 0.019 3.981 28 H 0.074 0.926 29 O -0.375 6.375 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.103 0.897 36 H 0.097 0.903 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.119 0.881 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.116 0.884 44 H 0.230 0.770 45 H 0.080 0.920 46 H 0.076 0.924 47 H 0.042 0.958 48 H 0.111 0.889 49 H 0.066 0.934 50 H 0.046 0.954 51 H 0.078 0.922 52 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -12.377 -19.839 8.693 24.947 hybrid contribution 0.643 0.364 -1.387 1.571 sum -11.734 -19.476 7.306 23.882 Atomic orbital electron populations 1.22126 0.95902 1.02167 1.02365 1.21397 0.94373 0.82426 1.03028 1.48073 1.66324 1.14340 1.06272 1.21634 0.97060 0.98237 0.85191 1.22218 0.96555 1.02244 1.02119 1.20814 0.76772 0.88778 0.83118 1.90689 1.52007 1.68176 1.30954 1.21429 1.04180 0.92359 0.98379 1.21369 1.04110 0.93581 0.97484 1.20522 0.77443 0.88245 0.84029 1.90699 1.52464 1.68154 1.31205 1.46093 1.67013 1.15155 1.08227 1.20992 0.94985 0.80475 0.97684 0.89490 1.22599 0.92990 1.01975 1.01091 1.20828 1.00554 0.85688 0.88409 1.44031 0.99643 1.59087 1.28427 1.19112 0.99722 1.29981 0.90120 0.91609 1.25084 1.00172 0.98356 0.95801 1.70019 1.25759 1.47191 1.11304 0.86338 0.81690 0.78332 0.80190 1.20821 1.21561 1.20949 1.21527 0.87340 0.92192 0.99623 1.22775 0.79992 0.98870 0.96507 0.92610 1.86480 1.21816 1.82461 1.46784 0.92159 0.91664 0.92634 0.89900 0.90727 0.89660 0.90282 0.92017 0.91141 0.92427 0.88082 0.87999 0.88404 0.88387 0.76952 0.91961 0.92379 0.95823 0.88931 0.93376 0.95364 0.92185 0.78012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 10.24 37.16 0.38 -0.74 16 2 C 0.11 0.80 6.13 -4.04 -0.02 0.78 16 3 N -0.62 -5.16 2.47 -173.69 -0.43 -5.59 16 4 C 0.10 0.62 5.93 -4.05 -0.02 0.60 16 5 C -0.17 -1.03 10.24 37.15 0.38 -0.65 16 6 C 0.52 5.64 7.67 -10.98 -0.08 5.56 16 7 O -0.54 -7.58 15.56 5.56 0.09 -7.49 16 8 C -0.12 -1.29 3.54 -27.88 -0.10 -1.39 16 9 C -0.12 -1.44 4.99 -27.88 -0.14 -1.58 16 10 C 0.51 7.65 7.79 -10.99 -0.09 7.56 16 11 O -0.55 -10.04 15.64 5.55 0.09 -9.95 16 12 N -0.72 -10.66 4.92 -53.76 -0.26 -10.93 16 13 C 0.16 2.92 2.12 -67.88 -0.14 2.78 16 14 H 0.09 1.80 7.58 -51.93 -0.39 1.41 16 15 C -0.15 -2.87 5.65 -26.61 -0.15 -3.02 16 16 C 0.17 4.09 5.30 -3.71 -0.02 4.07 16 17 N -0.59 -14.37 2.99 -172.32 -0.52 -14.89 16 18 C -0.26 -6.94 9.58 -15.06 -0.14 -7.08 16 19 H 0.07 1.70 7.88 -52.49 -0.41 1.29 16 20 C 0.01 0.14 4.92 -17.43 -0.09 0.06 16 21 N -0.90 -25.78 11.20 55.49 0.62 -25.16 16 22 Si 0.91 21.26 29.59 -169.99 -5.03 16.23 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 26 C 0.12 2.46 6.14 -3.71 -0.02 2.43 16 27 C 0.08 1.36 3.14 -26.61 -0.08 1.27 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 O -0.57 -8.57 13.16 -35.23 -0.46 -9.03 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.73 7.42 -51.93 -0.39 0.34 16 34 H 0.07 0.39 8.07 -51.93 -0.42 -0.03 16 35 H 0.09 0.52 6.44 -51.93 -0.33 0.19 16 36 H 0.08 0.35 8.07 -51.93 -0.42 -0.06 16 37 H 0.06 0.45 7.22 -51.93 -0.38 0.07 16 38 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 40 H 0.10 1.02 7.36 -51.93 -0.38 0.64 16 41 H 0.10 1.05 7.14 -51.93 -0.37 0.68 16 42 H 0.10 1.07 8.10 -51.93 -0.42 0.65 16 43 H 0.10 1.08 8.10 -51.93 -0.42 0.66 16 44 H 0.40 4.97 8.60 -40.82 -0.35 4.62 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 49 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 50 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 51 H 0.06 1.15 7.93 -51.93 -0.41 0.73 16 52 H 0.37 4.03 9.08 45.56 0.41 4.44 16 LS Contribution 415.04 15.07 6.25 6.25 Total: -1.00 -33.65 415.04 -8.36 -42.01 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -8.36 Total: 7.88 kcal Atomic # 6 Polarization: 11.00 SS G_CDS: -0.35 Total: 10.66 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: -0.59 Total: -56.55 kcal Atomic # 8 Polarization: -26.19 SS G_CDS: -0.29 Total: -26.48 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.03 Total: 16.23 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.65 -8.36 -42.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100121463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.967 kcal (2) G-P(sol) polarization free energy of solvation -33.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds