Wall clock time and date at job start Wed Apr 1 2020 01:33:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47402 * 2 1 4 4 C 1.46500 * 120.00295 * 89.99953 * 3 2 1 5 5 C 1.52992 * 109.47027 * 90.00258 * 4 3 2 6 6 C 1.34781 * 119.99671 * 270.00305 * 3 2 1 7 7 O 1.21276 * 120.00150 * 359.97438 * 6 3 2 8 8 C 1.50704 * 119.99821 * 179.97438 * 6 3 2 9 9 C 1.53005 * 109.46941 * 179.97438 * 8 6 3 10 10 C 1.50695 * 109.46877 * 179.97438 * 9 8 6 11 11 O 1.21292 * 120.00283 * 0.02562 * 10 9 8 12 12 N 1.34770 * 120.00129 * 180.02562 * 10 9 8 13 13 C 1.46508 * 120.00361 * 179.97438 * 12 10 9 14 14 H 1.08994 * 109.45852 * 325.02980 * 13 12 10 15 15 C 1.53046 * 109.45655 * 85.00019 * 13 12 10 16 16 C 1.53188 * 109.30891 * 181.38733 * 15 13 12 17 17 N 1.46928 * 108.77693 * 305.36413 * 16 15 13 18 18 C 1.36937 * 120.62866 * 233.59101 * 17 16 15 19 19 H 1.07999 * 120.00017 * 151.83184 * 18 17 16 20 20 C 1.38812 * 120.00099 * 331.82124 * 18 17 16 21 21 N 1.31616 * 120.00069 * 343.09417 * 20 18 17 22 22 Si 1.86799 * 120.00029 * 163.08950 * 20 18 17 23 23 H 1.48498 * 109.47111 * 60.00080 * 22 20 18 24 24 H 1.48495 * 109.47056 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.47190 * 300.00558 * 22 20 18 26 26 C 1.46930 * 118.73893 * 53.60714 * 17 16 15 27 27 C 1.53039 * 109.46028 * 205.06702 * 13 12 10 28 28 H 1.09000 * 109.49818 * 298.56785 * 27 13 12 29 29 O 1.42896 * 109.49689 * 58.66216 * 27 13 12 30 30 H 1.09003 * 109.47095 * 59.99993 * 1 2 3 31 31 H 1.08997 * 109.47104 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46940 * 299.99922 * 1 2 3 33 33 H 1.09000 * 109.47358 * 239.99750 * 2 1 3 34 34 H 1.09003 * 109.47095 * 120.00006 * 2 1 3 35 35 H 1.09003 * 109.47153 * 210.00237 * 4 3 2 36 36 H 1.08996 * 109.46667 * 329.99919 * 4 3 2 37 37 H 1.08996 * 109.47673 * 60.00277 * 5 4 3 38 38 H 1.09005 * 109.47284 * 180.02562 * 5 4 3 39 39 H 1.09003 * 109.47137 * 299.99989 * 5 4 3 40 40 H 1.08992 * 109.46771 * 300.00000 * 8 6 3 41 41 H 1.08998 * 109.46953 * 59.99765 * 8 6 3 42 42 H 1.08997 * 109.47002 * 299.99988 * 9 8 6 43 43 H 1.09002 * 109.46841 * 59.99928 * 9 8 6 44 44 H 0.97005 * 120.00086 * 359.97438 * 12 10 9 45 45 H 1.09000 * 109.49825 * 301.33520 * 15 13 12 46 46 H 1.09000 * 109.49981 * 61.43505 * 15 13 12 47 47 H 1.09005 * 109.58764 * 65.15188 * 16 15 13 48 48 H 1.08999 * 109.58990 * 185.57707 * 16 15 13 49 49 H 0.96995 * 120.00342 * 179.97438 * 21 20 18 50 50 H 1.09002 * 109.58318 * 66.17958 * 26 17 16 51 51 H 1.09001 * 109.58446 * 186.46144 * 26 17 16 52 52 H 0.96704 * 114.00002 * 179.97438 * 29 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2626 2.0718 1.2687 5 6 3.7075 1.8314 1.7103 6 6 2.2430 2.0165 -1.1673 7 8 2.0412 1.4446 -2.2175 8 6 2.7448 3.4375 -1.1673 9 6 2.9155 3.9180 -2.6099 10 6 3.4167 5.3392 -2.6099 11 8 3.6181 5.9113 -1.5595 12 7 3.6412 5.9746 -3.7771 13 6 4.1280 7.3564 -3.7771 14 1 3.6926 7.8948 -2.9353 15 6 5.6532 7.3596 -3.6506 16 6 6.1556 8.8064 -3.6162 17 7 5.6468 9.5120 -4.8002 18 6 6.5029 10.1736 -5.6396 19 1 6.2522 10.2914 -6.6834 20 6 7.6929 10.6931 -5.1486 21 7 7.8563 10.8523 -3.8524 22 14 9.0624 11.1661 -6.3277 23 1 8.5726 12.2118 -7.2614 24 1 10.2187 11.6911 -5.5582 25 1 9.4846 9.9707 -7.1010 26 6 4.2019 9.4946 -5.0664 27 6 3.7214 8.0401 -5.0846 28 1 4.1766 7.5170 -5.9255 29 8 2.2989 8.0093 -5.2165 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 2.0956 3.1411 1.1383 36 1 1.5817 1.6878 2.0283 37 1 4.3884 2.2155 0.9507 38 1 3.8891 2.3449 2.6545 39 1 3.8745 0.7622 1.8407 40 1 2.0266 4.0764 -0.6537 41 1 3.7049 3.4837 -0.6533 42 1 3.6339 3.2789 -3.1231 43 1 1.9556 3.8717 -3.1242 44 1 3.4805 5.5170 -4.6172 45 1 5.9430 6.8519 -2.7307 46 1 6.0903 6.8430 -4.5051 47 1 5.7922 9.2980 -2.7137 48 1 7.2455 8.8151 -3.6259 49 1 8.6879 11.2149 -3.5093 50 1 3.6793 10.0423 -4.2822 51 1 4.0026 9.9596 -6.0319 52 1 1.9697 8.4266 -6.0244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001100121463.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:33:20 Heat of formation + Delta-G solvation = -136.591711 kcal Electronic energy + Delta-G solvation = -30562.493504 eV Core-core repulsion = 26368.182273 eV Total energy + Delta-G solvation = -4194.311231 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.37857 -40.79540 -39.39701 -37.24959 -36.97074 -35.74894 -34.28130 -33.73719 -32.72344 -31.66324 -30.47516 -30.13189 -27.54783 -26.29520 -24.47400 -24.14898 -23.75273 -23.13200 -21.43778 -20.94334 -19.83428 -18.99234 -18.52091 -18.01591 -17.57620 -17.33372 -17.29568 -16.81508 -16.68714 -15.97330 -15.70076 -15.54822 -15.10937 -14.96120 -14.83700 -14.73355 -14.61333 -14.33384 -14.12693 -13.82598 -13.66021 -13.50676 -13.38864 -13.25940 -13.12935 -12.97723 -12.80540 -12.68510 -12.55151 -12.38216 -12.30654 -12.13802 -12.05583 -11.91092 -11.88328 -11.87821 -11.38156 -11.09359 -10.84604 -10.81407 -10.55734 -10.00074 -9.72556 -8.76037 -7.90292 -5.38148 1.48408 1.50992 1.57593 1.57673 1.66883 1.89375 2.29911 2.49233 3.13197 3.26616 3.45705 3.63755 3.80947 3.87082 4.01092 4.04132 4.09025 4.10349 4.21361 4.23090 4.24091 4.39831 4.45832 4.51342 4.54101 4.58095 4.60389 4.71588 4.76424 4.82893 4.85826 4.91999 4.94773 4.97172 5.00230 5.03316 5.04125 5.12366 5.28292 5.36500 5.37918 5.52160 5.60311 5.62516 5.65777 6.34009 6.34075 6.59412 6.88392 7.09736 7.12695 7.29351 7.77939 8.30788 9.16826 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020963 B = 0.002059 C = 0.001956 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.336845 B =13596.317592 C =14311.601944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.106 3.894 3 N -0.611 5.611 4 C 0.098 3.902 5 C -0.170 4.170 6 C 0.515 3.485 7 O -0.577 6.577 8 C -0.119 4.119 9 C -0.113 4.113 10 C 0.511 3.489 11 O -0.583 6.583 12 N -0.706 5.706 13 C 0.170 3.830 14 H 0.057 0.943 15 C -0.129 4.129 16 C 0.180 3.820 17 N -0.604 5.604 18 C -0.266 4.266 19 H 0.076 0.924 20 C -0.051 4.051 21 N -0.936 5.936 22 Si 0.971 3.029 23 H -0.273 1.273 24 H -0.297 1.297 25 H -0.275 1.275 26 C 0.118 3.882 27 C 0.101 3.899 28 H 0.072 0.928 29 O -0.570 6.570 30 H 0.035 0.965 31 H 0.079 0.921 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.101 0.899 35 H 0.084 0.916 36 H 0.103 0.897 37 H 0.044 0.956 38 H 0.081 0.919 39 H 0.061 0.939 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.108 0.892 43 H 0.108 0.892 44 H 0.413 0.587 45 H 0.059 0.941 46 H 0.068 0.932 47 H -0.008 1.008 48 H 0.062 0.938 49 H 0.251 0.749 50 H 0.011 0.989 51 H 0.074 0.926 52 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.714 -21.455 7.109 26.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.016 4.016 3 N -0.343 5.343 4 C -0.024 4.024 5 C -0.228 4.228 6 C 0.304 3.696 7 O -0.458 6.458 8 C -0.159 4.159 9 C -0.153 4.153 10 C 0.299 3.701 11 O -0.463 6.463 12 N -0.357 5.357 13 C 0.065 3.935 14 H 0.075 0.925 15 C -0.169 4.169 16 C 0.053 3.947 17 N -0.328 5.328 18 C -0.396 4.396 19 H 0.093 0.907 20 C -0.247 4.247 21 N -0.581 5.581 22 Si 0.799 3.201 23 H -0.199 1.199 24 H -0.224 1.224 25 H -0.201 1.201 26 C -0.009 4.009 27 C 0.040 3.960 28 H 0.090 0.910 29 O -0.378 6.378 30 H 0.054 0.946 31 H 0.098 0.902 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.119 0.881 35 H 0.103 0.897 36 H 0.121 0.879 37 H 0.063 0.937 38 H 0.100 0.900 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.249 0.751 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.010 0.990 48 H 0.080 0.920 49 H 0.060 0.940 50 H 0.029 0.971 51 H 0.093 0.907 52 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -13.533 -21.594 7.953 26.697 hybrid contribution 0.893 0.914 -1.098 1.685 sum -12.641 -20.680 6.855 25.188 Atomic orbital electron populations 1.22074 0.95307 1.02963 1.01616 1.21534 0.94831 0.81763 1.03443 1.48174 1.65075 1.14761 1.06335 1.21824 0.97764 0.98210 0.84605 1.22189 0.95943 1.02613 1.02104 1.20832 0.76593 0.88764 0.83387 1.90670 1.53897 1.68905 1.32285 1.21378 1.04365 0.92364 0.97792 1.21305 1.04581 0.90963 0.98484 1.21109 0.76460 0.89244 0.83261 1.90690 1.53924 1.69217 1.32507 1.45900 1.66650 1.13870 1.09231 1.20617 0.93444 0.82163 0.97292 0.92524 1.22320 0.94453 0.98772 1.01339 1.20553 0.98705 0.88061 0.87346 1.44243 1.01323 1.59194 1.28053 1.19518 1.00123 1.29118 0.90857 0.90657 1.25896 1.02528 0.99040 0.97191 1.70191 1.25968 1.48782 1.13189 0.85287 0.78469 0.78231 0.78119 1.19885 1.22367 1.20117 1.21692 0.84907 0.94653 0.99655 1.22312 0.81231 0.96212 0.96239 0.91006 1.86452 1.20104 1.82644 1.48572 0.94599 0.90170 0.91552 0.91702 0.88071 0.89739 0.87921 0.93663 0.90004 0.91943 0.87735 0.87914 0.87375 0.87384 0.75095 0.92241 0.91375 0.98987 0.91950 0.93998 0.97055 0.90711 0.75440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.90 10.24 71.98 0.74 -1.16 16 2 C 0.11 1.38 6.13 86.38 0.53 1.91 16 3 N -0.61 -9.38 2.47 -821.83 -2.03 -11.41 16 4 C 0.10 1.00 5.93 86.38 0.51 1.52 16 5 C -0.17 -1.75 10.24 71.98 0.74 -1.01 16 6 C 0.51 10.84 7.67 87.66 0.67 11.51 16 7 O -0.58 -15.90 15.56 -3.02 -0.05 -15.95 16 8 C -0.12 -2.39 3.54 29.85 0.11 -2.28 16 9 C -0.11 -2.45 4.99 29.85 0.15 -2.30 16 10 C 0.51 14.80 7.79 87.66 0.68 15.49 16 11 O -0.58 -21.40 15.64 -3.07 -0.05 -21.44 16 12 N -0.71 -19.95 4.92 -442.39 -2.18 -22.13 16 13 C 0.17 6.02 2.12 45.02 0.10 6.12 16 14 H 0.06 2.39 7.58 -2.39 -0.02 2.37 16 15 C -0.13 -5.08 5.65 30.67 0.17 -4.90 16 16 C 0.18 8.90 5.30 86.36 0.46 9.36 16 17 N -0.60 -29.77 2.99 -699.09 -2.09 -31.86 16 18 C -0.27 -14.19 9.58 84.03 0.81 -13.38 16 19 H 0.08 3.80 7.88 -2.91 -0.02 3.78 16 20 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 21 N -0.94 -55.40 11.20 21.65 0.24 -55.15 16 22 Si 0.97 43.95 29.59 68.60 2.03 45.98 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.30 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 26 C 0.12 4.70 6.14 86.36 0.53 5.23 16 27 C 0.10 3.27 3.14 30.67 0.10 3.36 16 28 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 29 O -0.57 -15.56 13.16 -148.98 -1.96 -17.53 16 30 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.06 1.10 7.42 -2.39 -0.02 1.08 16 34 H 0.10 0.78 8.07 -2.39 -0.02 0.76 16 35 H 0.08 0.91 6.44 -2.39 -0.02 0.89 16 36 H 0.10 0.61 8.07 -2.39 -0.02 0.59 16 37 H 0.04 0.62 7.22 -2.39 -0.02 0.60 16 38 H 0.08 0.66 8.14 -2.38 -0.02 0.64 16 39 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.10 2.02 7.36 -2.39 -0.02 2.01 16 41 H 0.10 2.05 7.14 -2.39 -0.02 2.03 16 42 H 0.11 2.17 8.10 -2.39 -0.02 2.15 16 43 H 0.11 2.18 8.10 -2.39 -0.02 2.16 16 44 H 0.41 9.24 8.60 -92.70 -0.80 8.44 16 45 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 46 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 47 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 48 H 0.06 3.45 6.06 -2.39 -0.01 3.44 16 49 H 0.25 14.44 8.31 -92.71 -0.77 13.66 16 50 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 51 H 0.07 2.73 7.93 -2.39 -0.02 2.71 16 52 H 0.40 7.17 9.08 -74.05 -0.67 6.49 16 Total: -1.00 -74.64 415.04 0.07 -74.58 By element: Atomic # 1 Polarization: 28.40 SS G_CDS: -0.55 Total: 27.85 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: 6.70 Total: 27.07 kcal Atomic # 7 Polarization: -114.50 SS G_CDS: -6.06 Total: -120.56 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -2.06 Total: -54.92 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -74.64 0.07 -74.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001100121463.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.016 kcal (2) G-P(sol) polarization free energy of solvation -74.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds