Wall clock time and date at job start Wed Apr 1 2020 01:43:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42896 * 114.00169 * 2 1 4 4 H 1.09000 * 110.81900 * 26.66304 * 3 2 1 5 5 C 1.54893 * 110.75319 * 263.32813 * 3 2 1 6 6 C 1.54266 * 104.19500 * 203.74223 * 5 3 2 7 7 C 1.53872 * 106.60044 * 23.61099 * 6 5 3 8 8 C 1.54266 * 106.59640 * 359.97438 * 7 6 5 9 9 H 1.09001 * 110.48620 * 95.07012 * 8 7 6 10 10 C 1.50704 * 110.48614 * 217.71111 * 8 7 6 11 11 O 1.21279 * 120.00018 * 118.55068 * 10 8 7 12 12 N 1.34780 * 119.99835 * 298.54478 * 10 8 7 13 13 C 1.46496 * 120.00217 * 0.02562 * 12 10 8 14 14 C 1.46501 * 119.99589 * 180.02562 * 12 10 8 15 15 C 1.52999 * 109.47302 * 90.00169 * 14 12 10 16 16 N 1.46903 * 109.47268 * 179.97438 * 15 14 12 17 17 C 1.46896 * 110.99376 * 66.04630 * 16 15 14 18 18 C 1.46896 * 110.99750 * 190.00213 * 16 15 14 19 19 C 1.50703 * 109.46721 * 170.00560 * 18 16 15 20 20 O 1.21297 * 120.00185 * 359.97438 * 19 18 16 21 21 N 1.34775 * 119.99908 * 180.02562 * 19 18 16 22 22 C 1.37100 * 120.00131 * 179.97438 * 21 19 18 23 23 H 1.08003 * 119.99946 * 359.97438 * 22 21 19 24 24 C 1.38947 * 119.99950 * 179.97438 * 22 21 19 25 25 N 1.31415 * 120.00003 * 180.02562 * 24 22 21 26 26 Si 1.86794 * 120.00353 * 359.97438 * 24 22 21 27 27 H 1.48512 * 109.46789 * 90.00071 * 26 24 22 28 28 H 1.48494 * 109.47526 * 209.99774 * 26 24 22 29 29 H 1.48501 * 109.47196 * 330.00554 * 26 24 22 30 30 H 1.09004 * 109.47196 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46663 * 300.00025 * 1 2 3 32 32 H 1.08995 * 109.47109 * 59.99936 * 1 2 3 33 33 H 1.09002 * 110.48578 * 85.06701 * 5 3 2 34 34 H 1.09001 * 110.49013 * 322.42142 * 5 3 2 35 35 H 1.09002 * 110.02957 * 264.32709 * 6 5 3 36 36 H 1.08996 * 110.03427 * 142.89930 * 6 5 3 37 37 H 1.09003 * 110.03622 * 240.71485 * 7 6 5 38 38 H 1.09005 * 110.03465 * 119.28158 * 7 6 5 39 39 H 1.09002 * 109.47218 * 89.99819 * 13 12 10 40 40 H 1.08997 * 109.47434 * 210.00165 * 13 12 10 41 41 H 1.09004 * 109.47299 * 329.99939 * 13 12 10 42 42 H 1.09005 * 109.46802 * 209.99972 * 14 12 10 43 43 H 1.08999 * 109.47454 * 329.99890 * 14 12 10 44 44 H 1.08991 * 109.47022 * 299.99892 * 15 14 12 45 45 H 1.09007 * 109.46688 * 59.99999 * 15 14 12 46 46 H 1.09001 * 109.47141 * 60.00675 * 17 16 15 47 47 H 1.09000 * 109.46699 * 179.97438 * 17 16 15 48 48 H 1.08995 * 109.47885 * 299.99658 * 17 16 15 49 49 H 1.09001 * 109.47105 * 289.99786 * 18 16 15 50 50 H 1.08991 * 109.47380 * 50.00429 * 18 16 15 51 51 H 0.97003 * 120.00442 * 359.97438 * 21 19 18 52 52 H 0.96996 * 120.00482 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 1 1.3360 2.0297 0.4572 5 6 2.3872 1.7384 -1.4386 6 6 3.4949 2.7932 -1.2382 7 6 4.1257 2.5124 0.1369 8 6 3.3790 1.2971 0.7244 9 1 3.9193 0.3758 0.5070 10 6 3.1908 1.4616 2.2105 11 8 2.0731 1.5085 2.6787 12 7 4.2648 1.5566 3.0193 13 6 5.6150 1.5003 2.4537 14 6 4.0819 1.7159 4.4641 15 6 4.0251 0.3378 5.1261 16 7 3.8423 0.4976 6.5749 17 6 2.5306 1.0853 6.8782 18 6 4.0195 -0.7831 7.2723 19 6 4.0695 -0.5426 8.7592 20 8 3.9680 0.5848 9.1950 21 7 4.2280 -1.5801 9.6047 22 6 4.2740 -1.3614 10.9573 23 1 4.1837 -0.3575 11.3453 24 6 4.4368 -2.4311 11.8289 25 7 4.4805 -2.2215 13.1255 26 14 4.5924 -4.1674 11.1579 27 1 6.0236 -4.4750 10.9076 28 1 4.0446 -5.1310 12.1461 29 1 3.8329 -4.2766 9.8864 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 1.5269 2.1795 -1.9420 34 1 2.7677 0.8886 -2.0054 35 1 3.0642 3.7944 -1.2540 36 1 4.2475 2.6977 -2.0208 37 1 4.0013 3.3773 0.7885 38 1 5.1846 2.2805 0.0216 39 1 5.9450 2.5078 2.2001 40 1 6.2976 1.0678 3.1851 41 1 5.6071 0.8836 1.5550 42 1 4.9171 2.2827 4.8757 43 1 3.1510 2.2497 4.6558 44 1 3.1900 -0.2289 4.7145 45 1 4.9561 -0.1959 4.9344 46 1 1.7439 0.4346 6.4964 47 1 2.4212 1.1922 7.9574 48 1 2.4532 2.0646 6.4061 49 1 3.1836 -1.4425 7.0389 50 1 4.9505 -1.2477 6.9479 51 1 4.3095 -2.4817 9.2562 52 1 4.5945 -2.9681 13.7340 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320021069.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:43:09 Heat of formation + Delta-G solvation = -101.687771 kcal Electronic energy + Delta-G solvation = -30476.397868 eV Core-core repulsion = 26283.600186 eV Total energy + Delta-G solvation = -4192.797682 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.76507 -38.90157 -38.47073 -36.77821 -36.33329 -35.43810 -33.86775 -31.65373 -30.88852 -29.14090 -28.67280 -27.76474 -27.00592 -26.35115 -25.28909 -23.90632 -21.93681 -21.04017 -20.86101 -19.42455 -19.24979 -18.21237 -17.79195 -16.91912 -16.68874 -16.18412 -15.69866 -15.40403 -15.27309 -15.10551 -14.96651 -14.81375 -14.37909 -14.04377 -13.89161 -13.80121 -13.39577 -13.36640 -13.06014 -12.89232 -12.86252 -12.55231 -12.46367 -12.39738 -12.08551 -11.95716 -11.86167 -11.67084 -11.58972 -11.42341 -11.27432 -11.07115 -10.99174 -10.95391 -10.78579 -10.57505 -9.95633 -9.92352 -9.83813 -9.51096 -8.97116 -8.50295 -8.15209 -7.92864 -6.28587 -3.79731 2.40216 2.67568 3.04869 3.08716 3.16780 3.44303 3.77264 3.91029 4.00026 4.11495 4.14319 4.36629 4.55964 4.77499 4.82429 4.83646 4.90000 4.95102 4.99554 5.00817 5.04787 5.05499 5.15311 5.21458 5.24102 5.27608 5.34587 5.40268 5.45873 5.49539 5.52048 5.56808 5.60645 5.64304 5.71448 5.75946 5.79364 5.88057 5.91282 5.98373 6.03213 6.28684 6.57926 6.90905 7.12428 7.19843 7.33721 7.61501 7.95592 8.17503 8.63286 8.98102 9.45403 9.86881 10.84582 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020699 B = 0.001970 C = 0.001908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1352.382195 B =14210.864106 C =14671.581088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.102 3.898 4 H 0.081 0.919 5 C -0.146 4.146 6 C -0.121 4.121 7 C -0.114 4.114 8 C -0.113 4.113 9 H 0.110 0.890 10 C 0.522 3.478 11 O -0.533 6.533 12 N -0.614 5.614 13 C 0.075 3.925 14 C 0.118 3.882 15 C 0.042 3.958 16 N -0.516 5.516 17 C 0.020 3.980 18 C 0.044 3.956 19 C 0.454 3.546 20 O -0.558 6.558 21 N -0.592 5.592 22 C -0.303 4.303 23 H 0.120 0.880 24 C 0.040 3.960 25 N -0.882 5.882 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.084 0.916 31 H 0.047 0.953 32 H 0.038 0.962 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.088 0.912 43 H 0.086 0.914 44 H 0.035 0.965 45 H 0.071 0.929 46 H 0.016 0.984 47 H 0.096 0.904 48 H 0.062 0.938 49 H 0.048 0.952 50 H 0.088 0.912 51 H 0.370 0.630 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 5.915 -33.064 33.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.297 6.297 3 C 0.044 3.956 4 H 0.099 0.901 5 C -0.184 4.184 6 C -0.159 4.159 7 C -0.152 4.152 8 C -0.134 4.134 9 H 0.128 0.872 10 C 0.309 3.691 11 O -0.409 6.409 12 N -0.348 5.348 13 C -0.068 4.068 14 C -0.004 4.004 15 C -0.088 4.088 16 N -0.240 5.240 17 C -0.127 4.127 18 C -0.087 4.087 19 C 0.240 3.760 20 O -0.440 6.440 21 N -0.232 5.232 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.102 0.898 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.087 0.913 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.098 0.902 39 H 0.078 0.922 40 H 0.094 0.906 41 H 0.090 0.910 42 H 0.106 0.894 43 H 0.105 0.895 44 H 0.053 0.947 45 H 0.090 0.910 46 H 0.035 0.965 47 H 0.114 0.886 48 H 0.081 0.919 49 H 0.066 0.934 50 H 0.106 0.894 51 H 0.203 0.797 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.633 6.791 -32.104 32.820 hybrid contribution -0.519 -2.001 -0.633 2.163 sum -1.152 4.790 -32.737 33.106 Atomic orbital electron populations 1.22764 0.80718 1.02687 1.00085 1.87847 1.20046 1.26996 1.94794 1.22910 0.93173 0.85597 0.93970 0.90076 1.22837 0.98966 0.99348 0.97234 1.22037 0.97925 0.99154 0.96790 1.22161 0.99767 0.96602 0.96671 1.22231 0.98269 1.01380 0.91516 0.87160 1.20464 0.84329 0.75800 0.88478 1.90703 1.23938 1.49420 1.76886 1.47827 1.06435 1.73050 1.07494 1.21941 0.83169 1.01930 0.99765 1.21477 1.04002 0.97245 0.77711 1.22433 1.00946 0.97106 0.88270 1.61529 1.32527 1.24201 1.05768 1.22585 0.87254 0.98327 1.04567 1.21887 1.01594 0.90810 0.94454 1.19632 0.83824 0.85683 0.86870 1.90525 1.53281 1.22283 1.77901 1.42216 1.66430 1.07270 1.07266 1.19426 1.47121 0.97758 0.78863 0.86259 1.25035 0.97740 0.98280 0.95179 1.69621 1.49080 1.32147 1.01394 0.86675 0.78940 0.84783 0.79011 1.19621 1.20218 1.19540 0.89765 0.93423 0.94327 0.91190 0.90376 0.91323 0.90998 0.90953 0.90194 0.92222 0.90595 0.90973 0.89359 0.89545 0.94717 0.91005 0.96532 0.88565 0.91899 0.93372 0.89357 0.79746 0.91658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.85 101.05 1.10 1.39 16 2 O -0.38 -4.09 10.49 -35.23 -0.37 -4.46 16 3 C 0.10 0.93 2.40 -24.75 -0.06 0.87 16 4 H 0.08 0.83 7.21 -51.93 -0.37 0.46 16 5 C -0.15 -0.92 6.55 -25.07 -0.16 -1.09 16 6 C -0.12 -0.60 6.80 -25.61 -0.17 -0.78 16 7 C -0.11 -0.63 5.00 -25.61 -0.13 -0.76 16 8 C -0.11 -0.93 2.05 -90.13 -0.18 -1.12 16 9 H 0.11 0.85 7.50 -51.93 -0.39 0.46 16 10 C 0.52 5.96 6.93 -10.98 -0.08 5.89 16 11 O -0.53 -8.21 15.34 5.56 0.09 -8.13 16 12 N -0.61 -6.08 2.87 -181.57 -0.52 -6.60 16 13 C 0.08 0.45 8.96 59.84 0.54 0.99 16 14 C 0.12 1.41 5.33 -4.04 -0.02 1.39 16 15 C 0.04 0.56 5.28 -3.82 -0.02 0.54 16 16 N -0.52 -8.69 4.50 -244.38 -1.10 -9.79 16 17 C 0.02 0.35 8.96 60.06 0.54 0.89 16 18 C 0.04 0.78 5.45 -4.98 -0.03 0.75 16 19 C 0.45 10.53 7.47 -10.98 -0.08 10.45 16 20 O -0.56 -15.04 13.91 5.54 0.08 -14.96 16 21 N -0.59 -14.35 5.09 -10.96 -0.06 -14.41 16 22 C -0.30 -8.65 10.16 -14.93 -0.15 -8.81 16 23 H 0.12 3.88 7.39 -52.48 -0.39 3.49 16 24 C 0.04 1.12 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -26.00 13.96 55.50 0.77 -25.22 16 26 Si 0.88 19.63 27.73 -169.99 -4.71 14.91 16 27 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 28 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 29 H -0.27 -5.53 6.52 56.52 0.37 -5.16 16 30 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.05 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.45 7.83 -51.93 -0.41 0.04 16 38 H 0.08 0.29 7.02 -51.93 -0.36 -0.07 16 39 H 0.06 0.28 7.87 -51.93 -0.41 -0.13 16 40 H 0.08 0.43 8.07 -51.93 -0.42 0.01 16 41 H 0.07 0.33 5.90 -51.93 -0.31 0.02 16 42 H 0.09 0.98 8.07 -51.93 -0.42 0.56 16 43 H 0.09 1.19 5.83 -51.93 -0.30 0.89 16 44 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 45 H 0.07 0.86 7.93 -51.93 -0.41 0.45 16 46 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.10 1.96 5.82 -51.93 -0.30 1.66 16 48 H 0.06 0.98 6.47 -51.93 -0.34 0.64 16 49 H 0.05 0.79 8.12 -51.93 -0.42 0.37 16 50 H 0.09 1.35 7.93 -51.93 -0.41 0.93 16 51 H 0.37 7.91 5.76 -40.82 -0.24 7.67 16 52 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 408.61 15.07 6.16 6.16 Total: -1.00 -35.43 408.61 -7.55 -42.98 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: -8.87 Total: 7.89 kcal Atomic # 6 Polarization: 10.65 SS G_CDS: 0.99 Total: 11.63 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: -0.90 Total: -56.02 kcal Atomic # 8 Polarization: -27.35 SS G_CDS: -0.21 Total: -27.55 kcal Atomic # 14 Polarization: 19.63 SS G_CDS: -4.71 Total: 14.91 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -35.43 -7.55 -42.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320021069.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.710 kcal (2) G-P(sol) polarization free energy of solvation -35.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds