Wall clock time and date at job start Wed Apr 1 2020 00:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.46882 * 2 1 4 4 C 1.46499 * 119.99658 * 90.00351 * 3 2 1 5 5 C 1.50702 * 109.47180 * 90.00124 * 4 3 2 6 6 H 1.08000 * 119.99932 * 359.97438 * 5 4 3 7 7 C 1.37879 * 120.00078 * 179.97438 * 5 4 3 8 8 N 1.31513 * 119.99991 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 119.99823 * 179.97438 * 7 5 4 10 10 H 1.48502 * 109.47469 * 90.00093 * 9 7 5 11 11 H 1.48505 * 109.46775 * 209.99487 * 9 7 5 12 12 H 1.48499 * 109.47378 * 329.99696 * 9 7 5 13 13 C 1.34773 * 120.00149 * 269.72165 * 3 2 1 14 14 O 1.21284 * 120.00332 * 180.02562 * 13 3 2 15 15 C 1.50707 * 119.99999 * 0.02562 * 13 3 2 16 16 N 1.46892 * 109.47231 * 172.69917 * 15 13 3 17 17 C 1.46846 * 111.00379 * 169.79017 * 16 15 13 18 18 C 1.53038 * 109.52896 * 185.83704 * 17 16 15 19 19 C 1.53117 * 109.27832 * 300.82298 * 18 17 16 20 20 C 1.53001 * 109.52346 * 177.55477 * 19 18 17 21 21 O 1.42907 * 109.46926 * 58.03818 * 20 19 18 22 22 N 1.46899 * 109.57210 * 297.71543 * 19 18 17 23 23 C 1.46905 * 110.99772 * 182.76772 * 22 19 18 24 24 C 1.53002 * 109.46789 * 103.99381 * 23 22 19 25 25 C 1.52993 * 109.47506 * 223.99108 * 23 22 19 26 26 C 1.53126 * 109.16000 * 57.65265 * 19 18 17 27 27 C 1.46848 * 110.99922 * 294.00045 * 16 15 13 28 28 H 1.08996 * 109.47314 * 299.99662 * 1 2 3 29 29 H 1.09000 * 109.47329 * 60.00109 * 1 2 3 30 30 H 1.08998 * 109.47102 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46916 * 240.00059 * 2 1 3 32 32 H 1.08996 * 109.47446 * 120.00646 * 2 1 3 33 33 H 1.09001 * 109.46667 * 209.99371 * 4 3 2 34 34 H 1.08994 * 109.47612 * 329.99796 * 4 3 2 35 35 H 0.96999 * 120.00306 * 180.02562 * 8 7 5 36 36 H 1.09011 * 109.46667 * 292.69572 * 15 13 3 37 37 H 1.08992 * 109.47526 * 52.69619 * 15 13 3 38 38 H 1.09002 * 109.46240 * 305.85919 * 17 16 15 39 39 H 1.09004 * 109.46325 * 65.82091 * 17 16 15 40 40 H 1.09001 * 109.50345 * 180.87584 * 18 17 16 41 41 H 1.08999 * 109.49745 * 60.76209 * 18 17 16 42 42 H 1.09000 * 109.46845 * 178.03361 * 20 19 18 43 43 H 1.08995 * 109.47217 * 298.03890 * 20 19 18 44 44 H 0.96697 * 113.99723 * 180.02562 * 21 20 19 45 45 H 1.00902 * 111.00295 * 58.82279 * 22 19 18 46 46 H 1.09001 * 109.47339 * 343.99710 * 23 22 19 47 47 H 1.08998 * 109.47493 * 64.45489 * 24 23 22 48 48 H 1.08998 * 109.47343 * 184.45886 * 24 23 22 49 49 H 1.09001 * 109.47188 * 304.45508 * 24 23 22 50 50 H 1.09001 * 109.46748 * 60.00533 * 25 23 22 51 51 H 1.08998 * 109.47071 * 179.97438 * 25 23 22 52 52 H 1.09001 * 109.47313 * 300.00618 * 25 23 22 53 53 H 1.09004 * 109.49938 * 182.40879 * 26 19 18 54 54 H 1.08998 * 109.50349 * 62.28670 * 26 19 18 55 55 H 1.08993 * 109.46567 * 294.17336 * 27 16 15 56 56 H 1.09003 * 109.46158 * 54.14637 * 27 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 1.2688 5 6 3.6858 1.8350 1.7037 6 1 4.3427 1.2303 1.0961 7 6 4.1494 2.3904 2.8774 8 7 3.3497 3.1272 3.6171 9 14 5.9135 2.0963 3.4169 10 1 6.7857 3.1610 2.8593 11 1 5.9883 2.1214 4.8998 12 1 6.3689 0.7729 2.9205 13 6 2.2482 2.0147 -1.1671 14 8 2.6529 3.1581 -1.1672 15 6 2.0025 1.3024 -2.4723 16 7 2.1567 2.2501 -3.5840 17 6 2.1648 1.5502 -4.8749 18 6 2.4717 2.5467 -5.9951 19 6 1.4082 3.6483 -5.9972 20 6 1.7434 4.6806 -7.0756 21 8 1.8150 4.0341 -8.3480 22 7 0.0908 3.0599 -6.2734 23 6 -0.9447 4.0992 -6.3477 24 6 -1.3151 4.3463 -7.8115 25 6 -2.1848 3.6396 -5.5785 26 6 1.3873 4.3293 -4.6259 27 6 1.1117 3.2810 -3.5454 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 2.0955 3.1410 1.1384 34 1 1.5818 1.6877 2.0284 35 1 3.6760 3.5183 4.4427 36 1 2.7217 0.4908 -2.5843 37 1 0.9915 0.8954 -2.4794 38 1 2.9282 0.7723 -4.8616 39 1 1.1885 1.0977 -5.0489 40 1 2.4623 2.0298 -6.9547 41 1 3.4539 2.9894 -5.8293 42 1 0.9674 5.4457 -7.0999 43 1 2.7036 5.1440 -6.8490 44 1 2.0247 4.6296 -9.0805 45 1 -0.1457 2.3627 -5.5835 46 1 -0.5658 5.0219 -5.9081 47 1 -1.7673 3.4466 -8.2288 48 1 -2.0248 5.1714 -7.8725 49 1 -0.4171 4.5971 -8.3762 50 1 -1.9209 3.4636 -4.5357 51 1 -2.9530 4.4109 -5.6333 52 1 -2.5638 2.7169 -6.0181 53 1 0.6028 5.0859 -4.6073 54 1 2.3523 4.8000 -4.4386 55 1 0.1404 2.8205 -3.7256 56 1 1.1103 3.7603 -2.5664 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000565166315.mol2 56 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:37:18 Heat of formation + Delta-G solvation = -100.347526 kcal Electronic energy + Delta-G solvation = -32483.649061 eV Core-core repulsion = 28426.742591 eV Total energy + Delta-G solvation = -4056.906470 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 341.247 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.51150 -40.46364 -37.90642 -36.86740 -36.69936 -34.95741 -34.33022 -31.87517 -31.62922 -30.51790 -29.47716 -28.70606 -27.82470 -26.42305 -24.68050 -24.37531 -23.92707 -22.57648 -21.62675 -19.86661 -19.65099 -18.62076 -18.13168 -17.98826 -17.36577 -17.10007 -16.68457 -16.49587 -16.44770 -15.80358 -15.72093 -15.38205 -14.88940 -14.69951 -14.57807 -14.47989 -14.40803 -14.24512 -14.07432 -13.71680 -13.62641 -13.36359 -13.21819 -13.10292 -13.02894 -12.97426 -12.66348 -12.66262 -12.56002 -12.44685 -12.40822 -12.16447 -12.08007 -11.99583 -11.88136 -11.71579 -11.57303 -11.51342 -11.17365 -10.73111 -10.65429 -10.47115 -9.43227 -9.29568 -9.13646 -8.22591 -6.37268 1.35310 1.38688 1.48134 1.89140 2.23321 2.40762 2.96139 3.06778 3.09815 3.37807 3.67467 3.73662 3.87535 4.01985 4.05804 4.11180 4.20881 4.24325 4.25952 4.33381 4.41258 4.43373 4.46051 4.48114 4.54173 4.56999 4.58961 4.62919 4.79878 4.83863 4.86577 4.93371 4.96238 4.97688 4.99816 5.03714 5.05117 5.09107 5.14719 5.21075 5.23734 5.30341 5.35325 5.36753 5.55881 5.58632 5.86016 5.98103 6.07332 6.16911 6.22996 6.47781 6.71377 6.85518 7.01525 7.29330 7.56466 8.84301 Molecular weight = 341.25amu Principal moments of inertia in cm(-1) A = 0.016777 B = 0.002654 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1668.594915 B =10545.636890 C =11123.787311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.100 3.900 3 N -0.606 5.606 4 C 0.266 3.734 5 C -0.540 4.540 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.966 3.034 10 H -0.282 1.282 11 H -0.274 1.274 12 H -0.261 1.261 13 C 0.496 3.504 14 O -0.578 6.578 15 C 0.052 3.948 16 N -0.538 5.538 17 C 0.058 3.942 18 C -0.089 4.089 19 C 0.123 3.877 20 C 0.094 3.906 21 O -0.564 6.564 22 N -0.662 5.662 23 C 0.071 3.929 24 C -0.133 4.133 25 C -0.160 4.160 26 C -0.136 4.136 27 C 0.066 3.934 28 H 0.037 0.963 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.099 0.901 32 H 0.071 0.929 33 H -0.007 1.007 34 H 0.020 0.980 35 H 0.267 0.733 36 H 0.120 0.880 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.048 0.952 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.388 0.612 45 H 0.336 0.664 46 H 0.050 0.950 47 H 0.050 0.950 48 H 0.055 0.945 49 H 0.062 0.938 50 H 0.045 0.955 51 H 0.069 0.931 52 H 0.064 0.936 53 H 0.073 0.927 54 H 0.061 0.939 55 H 0.037 0.963 56 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.870 -3.658 -24.053 26.255 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.022 4.022 3 N -0.339 5.339 4 C 0.144 3.856 5 C -0.579 4.579 6 H 0.071 0.929 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.791 3.209 10 H -0.208 1.208 11 H -0.199 1.199 12 H -0.185 1.185 13 C 0.284 3.716 14 O -0.458 6.458 15 C -0.078 4.078 16 N -0.264 5.264 17 C -0.069 4.069 18 C -0.127 4.127 19 C 0.031 3.969 20 C 0.015 3.985 21 O -0.370 6.370 22 N -0.295 5.295 23 C -0.038 4.038 24 C -0.191 4.191 25 C -0.218 4.218 26 C -0.176 4.176 27 C -0.062 4.062 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.114 0.886 31 H 0.118 0.882 32 H 0.090 0.910 33 H 0.011 0.989 34 H 0.038 0.962 35 H 0.075 0.925 36 H 0.137 0.863 37 H 0.100 0.900 38 H 0.105 0.895 39 H 0.066 0.934 40 H 0.104 0.896 41 H 0.079 0.921 42 H 0.069 0.931 43 H 0.065 0.935 44 H 0.236 0.764 45 H 0.156 0.844 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.074 0.926 49 H 0.081 0.919 50 H 0.064 0.936 51 H 0.088 0.912 52 H 0.083 0.917 53 H 0.091 0.909 54 H 0.079 0.921 55 H 0.055 0.945 56 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -9.290 -3.304 -24.152 26.087 hybrid contribution 0.211 0.784 1.717 1.899 sum -9.079 -2.520 -22.435 24.334 Atomic orbital electron populations 1.22139 0.94730 1.03437 1.01424 1.21721 0.95162 0.81480 1.03868 1.48301 1.64224 1.15157 1.06184 1.18631 0.95138 0.91334 0.80486 1.21718 0.97917 1.31811 1.06410 0.92945 1.25859 1.02352 0.94532 0.96468 1.70052 1.37719 1.34293 1.14901 0.85434 0.79108 0.78854 0.77531 1.20764 1.19925 1.18520 1.21203 0.77389 0.86755 0.86238 1.90626 1.46918 1.20468 1.87759 1.21972 1.03235 0.94891 0.87723 1.61456 1.48788 1.13782 1.02380 1.22198 1.01305 0.96386 0.87045 1.21433 0.97317 0.95871 0.98050 1.20930 0.90631 0.94310 0.91039 1.22103 0.99290 0.93268 0.83798 1.86542 1.94121 1.39609 1.16760 1.60797 1.00573 1.14374 1.53733 1.21625 0.91235 0.94029 0.96906 1.21823 1.01318 1.00836 0.95105 1.22127 0.97981 1.02443 0.99213 1.22157 1.02431 0.98005 0.94960 1.21938 0.91601 0.93381 0.99250 0.94387 0.92475 0.88581 0.88236 0.91040 0.98862 0.96240 0.92456 0.86266 0.89972 0.89525 0.93394 0.89552 0.92093 0.93127 0.93521 0.76398 0.84355 0.93191 0.93122 0.92566 0.91873 0.93579 0.91153 0.91677 0.90865 0.92050 0.94487 0.92997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.89 10.18 71.98 0.73 -3.16 16 2 C 0.10 3.02 5.83 86.38 0.50 3.52 16 3 N -0.61 -25.80 2.46 -826.16 -2.03 -27.83 16 4 C 0.27 14.58 5.16 85.63 0.44 15.02 16 5 C -0.54 -31.67 9.38 25.60 0.24 -31.43 16 6 H 0.05 3.05 7.81 -2.91 -0.02 3.02 16 7 C 0.01 0.39 5.46 84.66 0.46 0.85 16 8 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 9 Si 0.97 45.69 29.54 68.60 2.03 47.71 16 10 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 11 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 13 C 0.50 20.77 7.17 87.66 0.63 21.40 16 14 O -0.58 -30.43 14.32 -3.04 -0.04 -30.47 16 15 C 0.05 1.49 3.90 85.56 0.33 1.82 16 16 N -0.54 -15.19 4.35 -900.92 -3.92 -19.11 16 17 C 0.06 1.21 5.22 86.33 0.45 1.66 16 18 C -0.09 -1.85 4.87 30.65 0.15 -1.70 16 19 C 0.12 2.44 0.45 3.61 0.00 2.44 16 20 C 0.09 1.60 5.11 71.98 0.37 1.97 16 21 O -0.56 -9.04 11.56 -148.98 -1.72 -10.76 16 22 N -0.66 -12.16 5.83 -447.89 -2.61 -14.77 16 23 C 0.07 1.18 2.31 44.91 0.10 1.29 16 24 C -0.13 -2.01 9.17 71.98 0.66 -1.35 16 25 C -0.16 -2.43 9.03 71.98 0.65 -1.78 16 26 C -0.14 -3.30 4.71 30.65 0.14 -3.16 16 27 C 0.07 1.87 4.88 86.33 0.42 2.29 16 28 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 29 H 0.06 1.30 7.14 -2.39 -0.02 1.28 16 30 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 31 H 0.10 2.28 6.63 -2.39 -0.02 2.26 16 32 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 33 H -0.01 -0.43 7.43 -2.39 -0.02 -0.45 16 34 H 0.02 1.09 8.07 -2.39 -0.02 1.07 16 35 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 36 H 0.12 2.91 7.61 -2.38 -0.02 2.89 16 37 H 0.08 1.88 6.81 -2.39 -0.02 1.86 16 38 H 0.09 1.66 8.01 -2.39 -0.02 1.64 16 39 H 0.05 0.89 6.71 -2.39 -0.02 0.87 16 40 H 0.09 1.78 7.72 -2.39 -0.02 1.76 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.41 16 42 H 0.05 0.80 5.81 -2.39 -0.01 0.79 16 43 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.39 2.99 9.12 -74.06 -0.68 2.32 16 45 H 0.34 6.35 4.74 -89.69 -0.43 5.92 16 46 H 0.05 0.89 4.91 -2.39 -0.01 0.88 16 47 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 48 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 49 H 0.06 0.99 5.41 -2.39 -0.01 0.98 16 50 H 0.05 0.77 7.79 -2.39 -0.02 0.75 16 51 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 52 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 53 H 0.07 1.65 6.22 -2.38 -0.01 1.63 16 54 H 0.06 1.73 8.14 -2.39 -0.02 1.72 16 55 H 0.04 0.91 6.41 -2.39 -0.02 0.89 16 56 H 0.05 1.93 6.06 -2.39 -0.01 1.92 16 Total: -1.00 -76.60 415.56 -1.95 -78.55 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.23 Total: 23.88 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: 6.29 Total: 9.69 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -8.27 Total: -118.61 kcal Atomic # 8 Polarization: -39.46 SS G_CDS: -1.77 Total: -41.23 kcal Atomic # 14 Polarization: 45.69 SS G_CDS: 2.03 Total: 47.71 kcal Total: -76.60 -1.95 -78.55 kcal The number of atoms in the molecule is 56 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000565166315.mol2 56 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.801 kcal (2) G-P(sol) polarization free energy of solvation -76.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds