Wall clock time and date at job start Wed Apr 1 2020 01:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 120.00356 * 2 1 4 4 H 1.48493 * 109.46747 * 89.99995 * 3 2 1 5 5 H 1.48497 * 109.47129 * 210.00050 * 3 2 1 6 6 H 1.48500 * 109.46788 * 329.99992 * 3 2 1 7 7 C 1.37878 * 119.99666 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00285 * 359.97438 * 7 2 1 9 9 C 1.50706 * 119.99861 * 180.02562 * 7 2 1 10 10 O 1.42896 * 112.94104 * 48.43163 * 9 7 2 11 11 C 1.53933 * 113.73190 * 276.72145 * 9 7 2 12 12 N 1.47956 * 86.18393 * 221.92257 * 11 9 7 13 13 C 1.39198 * 110.99909 * 137.58302 * 12 11 9 14 14 C 1.39203 * 120.29930 * 119.64172 * 13 12 11 15 15 C 1.37342 * 120.88296 * 180.02562 * 14 13 12 16 16 C 1.40646 * 120.38795 * 359.97438 * 15 14 13 17 17 C 1.40468 * 117.54757 * 359.97438 * 16 15 14 18 18 C 1.36171 * 122.19364 * 359.73822 * 17 16 15 19 19 S 1.77155 * 102.97501 * 179.97438 * 17 16 15 20 20 O 1.42094 * 107.60676 * 111.99267 * 19 17 16 21 21 O 1.42101 * 107.61166 * 248.01437 * 19 17 16 22 22 N 1.67252 * 99.43659 * 0.02562 * 19 17 16 23 23 C 1.28753 * 106.24547 * 359.97438 * 22 19 17 24 24 Cl 1.73601 * 120.31628 * 180.02562 * 23 22 19 25 25 C 1.47962 * 90.76076 * 24.69167 * 12 11 9 26 26 H 0.96994 * 119.99729 * 0.02562 * 1 2 3 27 27 H 0.96704 * 113.99992 * 309.67000 * 10 9 7 28 28 H 1.08998 * 113.76133 * 336.24249 * 11 9 7 29 29 H 1.09002 * 113.75709 * 107.60481 * 11 9 7 30 30 H 1.07997 * 119.56123 * 359.97438 * 14 13 12 31 31 H 1.08004 * 119.80452 * 179.97438 * 15 14 13 32 32 H 1.07998 * 120.19928 * 180.28822 * 18 17 16 33 33 H 1.08994 * 113.75828 * 220.99069 * 25 12 11 34 34 H 1.09000 * 113.75741 * 89.62580 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 1.4000 5 1 3.5468 1.4401 -0.7000 6 1 1.4467 2.6526 -0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 8 4.0682 -0.3217 0.9854 11 6 4.1316 -1.0283 -1.3991 12 7 5.0973 -2.0705 -0.9863 13 6 5.3160 -2.9832 -2.0143 14 6 6.5927 -3.1542 -2.5419 15 6 6.8219 -4.0510 -3.5565 16 6 5.7652 -4.8161 -4.0820 17 6 4.4875 -4.6244 -3.5307 18 6 4.2584 -3.7402 -2.5208 19 16 3.4818 -5.7516 -4.4560 20 8 3.0607 -6.7792 -3.5696 21 8 2.6007 -4.9802 -5.2610 22 7 4.6504 -6.3995 -5.4620 23 6 5.7569 -5.8209 -5.1480 24 17 7.2253 -6.2276 -5.9800 25 6 4.1310 -2.6034 -0.0006 26 1 -0.4849 0.8400 -0.0004 27 1 3.7022 0.5733 0.9701 28 1 3.4728 -1.3368 -2.2108 29 1 4.5847 -0.0510 -1.5656 30 1 7.4139 -2.5734 -2.1486 31 1 7.8195 -4.1694 -3.9532 32 1 3.2635 -3.6219 -2.1176 33 1 4.5836 -2.8846 0.9502 34 1 3.4720 -3.3726 -0.4034 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001350480607.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:20:46 Heat of formation + Delta-G solvation = 17.112259 kcal Electronic energy + Delta-G solvation = -25070.192287 eV Core-core repulsion = 21124.957156 eV Total energy + Delta-G solvation = -3945.235131 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 342.027 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.20564 -39.74935 -37.81809 -37.50989 -36.80928 -36.11358 -35.03324 -32.62157 -31.77728 -31.10076 -27.92271 -25.92307 -25.33391 -24.33664 -23.18084 -21.76718 -19.83528 -19.39451 -18.17972 -17.92171 -17.24498 -16.53367 -16.51085 -16.39472 -15.98625 -15.48206 -14.85203 -14.59653 -14.41862 -14.29606 -13.82335 -13.51207 -13.32551 -13.08462 -12.83357 -12.63736 -12.40789 -12.32589 -12.29428 -11.92375 -11.86360 -11.64692 -11.41470 -11.17747 -11.03647 -10.89160 -10.69252 -10.21741 -9.88846 -9.62307 -9.20925 -9.13915 -8.94365 -8.47696 -6.49304 -4.56554 -0.74867 -0.32175 0.61881 0.95190 1.05557 2.42640 2.90029 2.92576 2.94102 2.96737 3.10280 3.16410 3.86599 3.96673 4.01874 4.42389 4.58027 4.61123 4.67882 4.84574 5.07827 5.13288 5.24168 5.31764 5.45067 5.50706 5.63129 5.68661 5.92307 6.04269 6.21368 6.25401 6.35310 6.54735 7.10938 7.34149 7.94823 8.42006 8.52506 9.07604 10.62650 Molecular weight = 342.03amu Principal moments of inertia in cm(-1) A = 0.018321 B = 0.003554 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.909681 B = 7877.176412 C = 8775.008360 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.081 3.919 3 Si 0.860 3.140 4 H -0.265 1.265 5 H -0.255 1.255 6 H -0.283 1.283 7 C -0.546 4.546 8 H 0.090 0.910 9 C 0.208 3.792 10 O -0.548 6.548 11 C -0.026 4.026 12 N -0.455 5.455 13 C 0.127 3.873 14 C -0.081 4.081 15 C -0.013 4.013 16 C -0.163 4.163 17 C -0.594 4.594 18 C -0.030 4.030 19 S 2.576 3.424 20 O -0.918 6.918 21 O -0.916 6.916 22 N -0.816 5.816 23 C 0.363 3.637 24 Cl 0.019 6.981 25 C 0.020 3.980 26 H 0.272 0.728 27 H 0.351 0.649 28 H 0.084 0.916 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.148 0.852 32 H 0.158 0.842 33 H 0.095 0.905 34 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.081 -7.242 -8.970 19.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C -0.125 4.125 3 Si 0.688 3.312 4 H -0.192 1.192 5 H -0.180 1.180 6 H -0.210 1.210 7 C -0.584 4.584 8 H 0.108 0.892 9 C 0.167 3.833 10 O -0.359 6.359 11 C -0.152 4.152 12 N -0.175 5.175 13 C 0.030 3.970 14 C -0.100 4.100 15 C -0.034 4.034 16 C -0.169 4.169 17 C -0.681 4.681 18 C -0.050 4.050 19 S 2.662 3.338 20 O -0.908 6.908 21 O -0.905 6.905 22 N -0.642 5.642 23 C 0.153 3.847 24 Cl 0.047 6.953 25 C -0.106 4.106 26 H 0.082 0.918 27 H 0.203 0.797 28 H 0.102 0.898 29 H 0.105 0.895 30 H 0.171 0.829 31 H 0.166 0.834 32 H 0.175 0.825 33 H 0.113 0.887 34 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 15.484 -8.447 -9.293 19.936 hybrid contribution 0.227 1.803 -0.047 1.818 sum 15.711 -6.644 -9.340 19.448 Atomic orbital electron populations 1.69858 1.06136 1.27802 1.46895 1.25021 0.94926 0.99148 0.93395 0.87312 0.80410 0.84228 0.79238 1.19183 1.18042 1.20981 1.21345 0.88002 0.95721 1.53312 0.89207 1.20388 0.92500 0.86940 0.83454 1.86468 1.67410 1.24200 1.57859 1.25477 0.92006 0.94979 1.02694 1.66522 1.36560 1.07379 1.07054 1.20523 0.93008 0.91773 0.91745 1.21172 0.96982 0.96954 0.94844 1.21055 0.97697 0.91431 0.93256 1.19635 0.96700 1.01545 0.99061 1.30881 1.11458 1.15581 1.10168 1.20830 1.01294 0.91430 0.91493 1.06677 0.76580 0.75138 0.75371 1.93717 1.79365 1.54301 1.63387 1.93731 1.60570 1.69477 1.66769 1.77474 1.12599 1.35186 1.38927 1.24268 0.90389 0.84702 0.85341 1.98492 1.30045 1.91367 1.75361 1.24427 0.91947 0.98229 0.96042 0.91765 0.79656 0.89760 0.89493 0.82851 0.83391 0.82459 0.88665 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.21 13.96 55.43 0.77 -23.44 16 2 C 0.08 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.86 18.52 24.34 -169.99 -4.14 14.38 16 4 H -0.27 -5.55 7.06 56.52 0.40 -5.15 16 5 H -0.26 -5.10 5.27 56.52 0.30 -4.80 16 6 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 7 C -0.55 -13.73 9.20 -34.44 -0.32 -14.05 16 8 H 0.09 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.21 4.46 1.05 -90.84 -0.10 4.36 16 10 O -0.55 -12.17 13.32 -35.23 -0.47 -12.64 16 11 C -0.03 -0.48 6.39 -2.77 -0.02 -0.50 16 12 N -0.45 -7.55 6.27 -174.38 -1.09 -8.65 16 13 C 0.13 1.80 5.17 -83.66 -0.43 1.36 16 14 C -0.08 -0.85 9.90 -39.55 -0.39 -1.24 16 15 C -0.01 -0.11 9.88 -39.00 -0.39 -0.50 16 16 C -0.16 -1.80 6.08 -104.82 -0.64 -2.44 16 17 C -0.59 -8.09 6.56 -39.49 -0.26 -8.35 16 18 C -0.03 -0.43 7.86 -39.83 -0.31 -0.74 16 19 S 2.58 38.37 6.48 -107.50 -0.70 37.68 16 20 O -0.92 -15.76 18.09 -56.99 -1.03 -16.79 16 21 O -0.92 -16.09 18.09 -56.99 -1.03 -17.12 16 22 N -0.82 -10.62 11.98 29.29 0.35 -10.27 16 23 C 0.36 3.94 7.34 -15.52 -0.11 3.82 16 24 Cl 0.02 0.15 29.02 -51.86 -1.51 -1.35 16 25 C 0.02 0.36 7.12 -2.76 -0.02 0.34 16 26 H 0.27 7.05 8.31 -40.82 -0.34 6.72 16 27 H 0.35 7.52 3.32 45.56 0.15 7.67 16 28 H 0.08 1.56 7.10 -51.93 -0.37 1.19 16 29 H 0.09 1.60 6.97 -51.93 -0.36 1.24 16 30 H 0.15 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.15 0.73 8.05 -52.48 -0.42 0.31 16 32 H 0.16 2.36 6.33 -52.49 -0.33 2.03 16 33 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 34 H 0.09 1.47 5.65 -51.93 -0.29 1.18 16 LS Contribution 313.00 15.07 4.72 4.72 Total: -1.00 -31.36 313.00 -9.34 -40.70 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -2.14 Total: 8.71 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: -3.08 Total: -15.93 kcal Atomic # 7 Polarization: -42.39 SS G_CDS: 0.03 Total: -42.36 kcal Atomic # 8 Polarization: -44.02 SS G_CDS: -2.53 Total: -46.55 kcal Atomic # 14 Polarization: 18.52 SS G_CDS: -4.14 Total: 14.38 kcal Atomic # 16 Polarization: 38.37 SS G_CDS: -0.70 Total: 37.68 kcal Atomic # 17 Polarization: 0.15 SS G_CDS: -1.51 Total: -1.35 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.36 -9.34 -40.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001350480607.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.808 kcal (2) G-P(sol) polarization free energy of solvation -31.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds