Wall clock time and date at job start Wed Apr 1 2020 00:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34778 * 119.99270 * 2 1 4 4 O 1.21714 * 119.99506 * 176.00777 * 3 2 1 5 5 C 1.46550 * 120.00524 * 356.00858 * 3 2 1 6 6 C 1.36601 * 125.98441 * 186.37243 * 5 3 2 7 7 C 1.40275 * 106.73413 * 180.02562 * 6 5 3 8 8 C 1.35312 * 107.11504 * 0.02562 * 7 6 5 9 9 Br 1.89097 * 125.62551 * 180.02562 * 8 7 6 10 10 O 1.33946 * 108.74488 * 359.73492 * 8 7 6 11 11 C 1.46496 * 120.00103 * 180.02562 * 2 1 3 12 12 H 1.09000 * 110.63815 * 178.31406 * 11 2 1 13 13 C 1.55153 * 110.72220 * 54.98089 * 11 2 1 14 14 C 1.55131 * 101.48376 * 205.96851 * 13 11 2 15 15 N 1.47418 * 104.72435 * 37.29434 * 14 13 11 16 16 C 1.36939 * 125.64910 * 155.82096 * 15 14 13 17 17 H 1.08002 * 119.99475 * 192.57198 * 16 15 14 18 18 C 1.38806 * 119.99976 * 12.57344 * 16 15 14 19 19 N 1.31617 * 119.99892 * 205.00223 * 18 16 15 20 20 Si 1.86799 * 120.00121 * 25.00165 * 18 16 15 21 21 H 1.48498 * 109.47112 * 270.00101 * 20 18 16 22 22 H 1.48491 * 109.47266 * 29.99969 * 20 18 16 23 23 H 1.48495 * 109.47195 * 150.00184 * 20 18 16 24 24 C 1.47026 * 108.70160 * 335.55171 * 15 14 13 25 25 H 1.09000 * 109.47388 * 275.77527 * 1 2 3 26 26 H 1.08999 * 109.47542 * 35.78263 * 1 2 3 27 27 H 1.09010 * 109.46785 * 155.77405 * 1 2 3 28 28 H 1.08001 * 126.63163 * 359.96286 * 6 5 3 29 29 H 1.07997 * 126.43648 * 180.02562 * 7 6 5 30 30 H 1.09006 * 111.00209 * 324.20189 * 13 11 2 31 31 H 1.08996 * 111.00703 * 88.01935 * 13 11 2 32 32 H 1.08997 * 110.49623 * 278.45108 * 14 13 11 33 33 H 1.09002 * 110.34052 * 156.06115 * 14 13 11 34 34 H 0.97008 * 120.00338 * 354.93357 * 19 18 16 35 35 H 1.08999 * 109.88268 * 120.70821 * 24 15 14 36 36 H 1.09004 * 109.88141 * 241.87272 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1387 1.1673 0.0000 4 8 3.3537 1.1686 0.0734 5 6 1.4086 2.4349 -0.0883 6 6 1.9663 3.6748 -0.2209 7 6 0.9059 4.5920 -0.2649 8 6 -0.2404 3.8810 -0.1580 9 35 -1.9883 4.6024 -0.1595 10 8 0.0672 2.5812 -0.0573 11 6 2.1975 -1.2687 -0.0006 12 1 3.2726 -1.0916 -0.0305 13 6 1.7508 -2.1600 -1.1894 14 6 2.0693 -3.5786 -0.6485 15 7 1.7325 -3.5173 0.7853 16 6 1.4006 -4.5867 1.5736 17 1 0.9754 -4.4242 2.5530 18 6 1.6106 -5.8795 1.1139 19 7 0.8887 -6.8723 1.5888 20 14 2.9178 -6.2103 -0.1788 21 1 2.3170 -6.0925 -1.5317 22 1 4.0158 -5.2207 -0.0370 23 1 3.4597 -7.5806 0.0045 24 6 1.8183 -2.1187 1.2303 25 1 -0.3634 0.1034 1.0224 26 1 -0.3634 0.8337 -0.6009 27 1 -0.3633 -0.9373 -0.4217 28 1 3.0200 3.9046 -0.2793 29 1 0.9888 5.6641 -0.3652 30 1 0.6850 -2.0434 -1.3862 31 1 2.3369 -1.9428 -2.0823 32 1 3.1265 -3.8089 -0.7804 33 1 1.4524 -4.3233 -1.1517 34 1 0.2616 -6.7135 2.3118 35 1 0.8541 -1.7944 1.6219 36 1 2.5849 -2.0206 1.9990 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033608913.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:47:05 Heat of formation + Delta-G solvation = 34.829987 kcal Electronic energy + Delta-G solvation = -21850.140849 eV Core-core repulsion = 18384.326554 eV Total energy + Delta-G solvation = -3465.814295 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 342.037 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.16415 -39.95149 -37.72710 -35.22384 -33.66143 -32.59891 -32.31725 -30.01964 -29.16531 -28.10316 -26.90806 -24.30998 -22.94467 -22.30163 -21.02096 -20.54555 -19.46909 -17.96951 -17.46238 -17.07416 -16.81562 -16.17498 -15.27898 -14.95148 -14.54216 -13.89558 -13.71184 -13.51017 -13.47356 -13.34903 -13.23541 -13.08659 -12.45582 -12.08340 -11.80818 -11.70728 -11.40397 -11.18232 -11.13365 -11.04803 -10.73965 -10.47520 -10.33493 -10.02119 -9.60830 -9.27643 -9.04788 -8.64300 -8.49755 -7.11683 -6.34508 -3.23162 0.35128 0.54764 1.78830 2.48991 2.92050 3.03588 3.40353 3.52781 3.66886 4.27526 4.38137 4.57810 4.91126 4.96558 5.01381 5.09834 5.17782 5.22043 5.31368 5.36394 5.50408 5.53492 5.75641 5.78039 5.82273 5.89847 6.17779 6.20789 6.28710 6.45888 6.51882 6.68254 6.70862 7.21839 7.67008 7.86512 8.31774 9.01047 9.55504 10.22061 11.13508 Molecular weight = 342.04amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.002672 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.118371 B =10475.309434 C =11182.380240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.587 5.587 3 C 0.597 3.403 4 O -0.517 6.517 5 C -0.041 4.041 6 C -0.124 4.124 7 C -0.162 4.162 8 C -0.016 4.016 9 Br 0.057 6.943 10 O -0.139 6.139 11 C 0.125 3.875 12 H 0.111 0.889 13 C -0.140 4.140 14 C 0.106 3.894 15 N -0.606 5.606 16 C -0.328 4.328 17 H 0.076 0.924 18 C -0.019 4.019 19 N -0.920 5.920 20 Si 1.063 2.937 21 H -0.293 1.293 22 H -0.286 1.286 23 H -0.298 1.298 24 C 0.129 3.871 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.088 0.912 28 H 0.170 0.830 29 H 0.167 0.833 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.035 0.965 33 H 0.065 0.935 34 H 0.263 0.737 35 H 0.034 0.966 36 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 27.496 -6.650 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.318 5.318 3 C 0.384 3.616 4 O -0.395 6.395 5 C -0.095 4.095 6 C -0.145 4.145 7 C -0.184 4.184 8 C -0.146 4.146 9 Br 0.141 6.859 10 O -0.035 6.035 11 C 0.022 3.978 12 H 0.129 0.871 13 C -0.179 4.179 14 C -0.019 4.019 15 N -0.334 5.334 16 C -0.455 4.455 17 H 0.093 0.907 18 C -0.220 4.220 19 N -0.560 5.560 20 Si 0.895 3.105 21 H -0.221 1.221 22 H -0.213 1.213 23 H -0.226 1.226 24 C 0.002 3.998 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.106 0.894 28 H 0.187 0.813 29 H 0.184 0.816 30 H 0.094 0.906 31 H 0.090 0.910 32 H 0.053 0.947 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.052 0.948 36 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -4.834 26.207 -7.434 27.667 hybrid contribution -0.399 1.251 1.073 1.696 sum -5.233 27.458 -6.362 28.667 Atomic orbital electron populations 1.22073 0.78702 1.03824 1.02735 1.47773 1.07649 1.05570 1.70783 1.16612 0.86186 0.81125 0.77723 1.90896 1.11840 1.85729 1.51055 1.22424 0.79733 0.96824 1.10529 1.21984 1.01330 0.89939 1.01254 1.21722 0.89623 1.01518 1.05562 1.24400 0.94622 0.84208 1.11402 1.96910 1.12063 1.79199 1.97711 1.84441 1.23992 1.24921 1.70173 1.22366 0.97397 0.80983 0.97049 0.87100 1.23182 1.01723 0.96196 0.96790 1.22059 0.98648 0.94847 0.86348 1.44767 1.82058 1.02228 1.04341 1.20030 1.39379 0.84607 1.01522 0.90666 1.25882 1.01301 0.90926 1.03844 1.70915 1.23858 1.34293 1.26952 0.83863 0.76797 0.74696 0.75143 1.22071 1.21261 1.22588 1.21571 0.98712 0.85768 0.93766 0.91914 0.90277 0.89363 0.81258 0.81582 0.90582 0.90954 0.94742 0.91706 0.92693 0.94770 0.94911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.86 8.41 59.85 0.50 1.37 16 2 N -0.59 -8.72 2.88 -173.43 -0.50 -9.21 16 3 C 0.60 8.94 7.64 -12.91 -0.10 8.84 16 4 O -0.52 -9.06 16.25 5.18 0.08 -8.97 16 5 C -0.04 -0.51 6.78 -36.82 -0.25 -0.76 16 6 C -0.12 -1.27 10.62 -39.41 -0.42 -1.69 16 7 C -0.16 -1.38 10.82 -39.86 -0.43 -1.82 16 8 C -0.02 -0.16 7.80 29.69 0.23 0.08 16 9 Br 0.06 0.43 34.09 -68.01 -2.32 -1.89 16 10 O -0.14 -1.57 7.26 4.79 0.03 -1.54 16 11 C 0.12 2.14 3.35 -66.10 -0.22 1.92 16 12 H 0.11 1.98 7.00 -51.93 -0.36 1.62 16 13 C -0.14 -2.33 6.60 -24.46 -0.16 -2.49 16 14 C 0.11 2.27 4.71 -2.41 -0.01 2.26 16 15 N -0.61 -14.76 3.27 -169.94 -0.56 -15.31 16 16 C -0.33 -9.35 10.44 -15.06 -0.16 -9.51 16 17 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 18 C -0.02 -0.55 5.42 -17.43 -0.09 -0.65 16 19 N -0.92 -28.62 13.70 55.49 0.76 -27.86 16 20 Si 1.06 26.47 24.69 -169.99 -4.20 22.27 16 21 H -0.29 -6.82 6.61 56.52 0.37 -6.45 16 22 H -0.29 -6.79 6.25 56.52 0.35 -6.44 16 23 H -0.30 -7.53 7.11 56.52 0.40 -7.13 16 24 C 0.13 2.63 6.88 -3.07 -0.02 2.61 16 25 H 0.06 0.77 8.09 -51.93 -0.42 0.35 16 26 H 0.08 0.88 5.32 -51.93 -0.28 0.60 16 27 H 0.09 1.12 6.13 -51.92 -0.32 0.80 16 28 H 0.17 1.52 8.06 -52.49 -0.42 1.09 16 29 H 0.17 0.93 8.06 -52.49 -0.42 0.51 16 30 H 0.08 1.18 6.15 -51.93 -0.32 0.86 16 31 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 32 H 0.04 0.75 5.61 -51.93 -0.29 0.46 16 33 H 0.06 1.45 6.23 -51.93 -0.32 1.13 16 34 H 0.26 8.09 8.73 -40.82 -0.36 7.73 16 35 H 0.03 0.69 7.07 -51.93 -0.37 0.32 16 36 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 312.35 15.07 4.71 4.71 Total: -1.00 -32.30 312.35 -7.14 -39.44 By element: Atomic # 1 Polarization: 2.24 SS G_CDS: -4.02 Total: -1.78 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -1.13 Total: 0.16 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.29 Total: -52.39 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.12 Total: -10.51 kcal Atomic # 14 Polarization: 26.47 SS G_CDS: -4.20 Total: 22.27 kcal Atomic # 35 Polarization: 0.43 SS G_CDS: -2.32 Total: -1.89 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.30 -7.14 -39.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033608913.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.266 kcal (2) G-P(sol) polarization free energy of solvation -32.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds