Wall clock time and date at job start Wed Apr 1 2020 00:26:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31445 * 1 3 3 Si 1.86801 * 119.99942 * 2 1 4 4 H 1.48499 * 109.47082 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47096 * 300.00569 * 3 2 1 6 6 H 1.48501 * 109.46822 * 60.00277 * 3 2 1 7 7 C 1.38749 * 119.99722 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99942 * 179.97438 * 7 2 1 9 9 O 1.34916 * 120.00283 * 359.97438 * 7 2 1 10 10 C 1.34315 * 117.00189 * 179.97438 * 9 7 2 11 11 O 1.21218 * 119.99596 * 0.02562 * 10 9 7 12 12 C 1.50696 * 120.00262 * 179.97438 * 10 9 7 13 13 C 1.52997 * 109.47321 * 180.02562 * 12 10 9 14 14 S 1.81397 * 109.47454 * 180.02562 * 13 12 10 15 15 O 1.42097 * 110.54316 * 68.37076 * 14 13 12 16 16 O 1.42103 * 110.54199 * 291.62370 * 14 13 12 17 17 C 1.76196 * 104.45283 * 180.02562 * 14 13 12 18 18 C 1.38259 * 119.93869 * 269.72364 * 17 14 13 19 19 C 1.38202 * 120.11001 * 180.32964 * 18 17 14 20 20 C 1.38697 * 120.06460 * 0.02562 * 19 18 17 21 21 C 1.38974 * 119.82631 * 359.90097 * 20 19 18 22 22 C 1.38195 * 119.94838 * 89.99640 * 17 14 13 23 23 O 1.36101 * 120.78519 * 180.26783 * 21 20 19 24 24 C 1.43172 * 116.71998 * 342.81351 * 23 21 20 25 25 C 1.53465 * 108.25008 * 46.16016 * 24 23 21 26 26 O 1.36112 * 119.39560 * 179.81351 * 20 19 18 27 27 H 0.97002 * 120.00233 * 359.97438 * 1 2 3 28 28 H 1.09004 * 109.46574 * 60.00198 * 12 10 9 29 29 H 1.08999 * 109.47680 * 300.00547 * 12 10 9 30 30 H 1.08995 * 109.47213 * 60.00209 * 13 12 10 31 31 H 1.09012 * 109.46990 * 300.00372 * 13 12 10 32 32 H 1.07997 * 119.94717 * 0.30575 * 18 17 14 33 33 H 1.07998 * 119.96268 * 180.02562 * 19 18 17 34 34 H 1.08000 * 119.96192 * 359.71362 * 22 17 14 35 35 H 1.09002 * 109.71343 * 165.85481 * 24 23 21 36 36 H 1.09004 * 109.70495 * 286.47553 * 24 23 21 37 37 H 1.08997 * 109.70703 * 59.95268 * 25 24 23 38 38 H 1.09004 * 109.71370 * 180.58219 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.7084 1.3464 -0.0006 5 1 1.8896 2.3965 -1.2124 6 1 1.8897 2.3964 1.2126 7 6 2.0081 -1.2016 -0.0005 8 1 3.0882 -1.2017 -0.0010 9 8 1.3336 -2.3700 -0.0005 10 6 2.0651 -3.4965 -0.0016 11 8 3.2756 -3.4330 -0.0020 12 6 1.3809 -4.8393 -0.0011 13 6 2.4346 -5.9485 -0.0019 14 16 1.6112 -7.5648 -0.0020 15 8 0.9473 -7.7861 -1.2387 16 8 0.9484 -7.7869 1.2352 17 6 2.9318 -8.7312 -0.0022 18 6 3.4451 -9.1922 -1.2003 19 6 4.4764 -10.1122 -1.2046 20 6 4.9988 -10.5759 -0.0063 21 6 4.4839 -10.1114 1.1980 22 6 3.4490 -9.1880 1.1952 23 8 4.9854 -10.5492 2.3851 24 6 5.7669 -11.7483 2.3508 25 6 6.7590 -11.6421 1.1847 26 8 6.0118 -11.4848 -0.0264 27 1 -0.4850 0.8400 0.0004 28 1 0.7572 -4.9295 -0.8905 29 1 0.7591 -4.9300 0.8895 30 1 3.0580 -5.8581 0.8876 31 1 3.0568 -5.8580 -0.8924 32 1 3.0393 -8.8330 -2.1345 33 1 4.8758 -10.4704 -2.1419 34 1 3.0463 -8.8261 2.1297 35 1 6.3120 -11.8589 3.2882 36 1 5.1142 -12.6083 2.2009 37 1 7.4075 -10.7784 1.3314 38 1 7.3608 -12.5494 1.1302 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000010766708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:26:10 Heat of formation + Delta-G solvation = -218.554245 kcal Electronic energy + Delta-G solvation = -26690.585359 eV Core-core repulsion = 22397.962140 eV Total energy + Delta-G solvation = -4292.623219 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.074 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.41074 -41.05568 -38.94832 -38.45243 -38.21975 -37.47877 -37.07738 -34.38719 -34.14428 -32.44990 -31.98906 -29.74383 -28.09357 -26.22736 -25.85686 -24.31101 -22.53747 -21.75147 -20.33751 -19.93672 -19.76891 -19.05609 -18.50767 -18.41138 -17.56122 -17.30443 -17.07284 -16.63814 -16.49181 -16.33672 -16.19268 -16.06579 -15.54848 -15.21772 -15.06727 -14.94467 -14.67418 -14.52579 -13.93946 -13.64140 -13.58938 -13.27389 -13.25138 -13.14675 -13.01215 -12.69240 -12.58312 -12.33611 -12.17204 -12.15076 -12.09121 -11.98461 -11.86896 -11.56210 -11.10513 -10.70583 -10.00820 -9.46703 -8.54498 -6.34817 -1.09454 -0.37480 0.06751 1.28543 1.35378 1.53917 1.61570 1.74195 1.82615 2.09217 2.15248 2.22698 2.63676 2.93461 2.96762 3.07389 3.12731 3.33991 3.50362 3.75525 3.85895 3.90848 4.00248 4.07035 4.22346 4.24995 4.42027 4.49111 4.52108 4.63228 4.70233 4.71328 4.85018 4.88070 4.94386 5.17733 5.32045 5.68509 5.82224 6.18281 6.63017 6.90625 7.73413 8.66357 Molecular weight = 342.07amu Principal moments of inertia in cm(-1) A = 0.020090 B = 0.002316 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.373722 B =12085.018329 C =12664.076777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.006 4.006 3 Si 1.019 2.981 4 H -0.264 1.264 5 H -0.260 1.260 6 H -0.261 1.261 7 C -0.421 4.421 8 H 0.085 0.915 9 O -0.244 6.244 10 C 0.403 3.597 11 O -0.575 6.575 12 C -0.103 4.103 13 C -0.585 4.585 14 S 2.534 3.466 15 O -0.950 6.950 16 O -0.957 6.957 17 C -0.659 4.659 18 C -0.022 4.022 19 C -0.137 4.137 20 C 0.098 3.902 21 C 0.017 3.983 22 C -0.032 4.032 23 O -0.321 6.321 24 C 0.011 3.989 25 C 0.012 3.988 26 O -0.312 6.312 27 H 0.279 0.721 28 H 0.132 0.868 29 H 0.129 0.871 30 H 0.151 0.849 31 H 0.156 0.844 32 H 0.172 0.828 33 H 0.169 0.831 34 H 0.157 0.843 35 H 0.157 0.843 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.235 -25.340 1.382 28.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.206 4.206 3 Si 0.838 3.162 4 H -0.188 1.188 5 H -0.185 1.185 6 H -0.185 1.185 7 C -0.497 4.497 8 H 0.103 0.897 9 O -0.152 6.152 10 C 0.250 3.750 11 O -0.473 6.473 12 C -0.142 4.142 13 C -0.714 4.714 14 S 2.716 3.284 15 O -0.947 6.947 16 O -0.955 6.955 17 C -0.747 4.747 18 C -0.041 4.041 19 C -0.157 4.157 20 C 0.052 3.948 21 C -0.029 4.029 22 C -0.051 4.051 23 O -0.237 6.237 24 C -0.064 4.064 25 C -0.063 4.063 26 O -0.225 6.225 27 H 0.089 0.911 28 H 0.150 0.850 29 H 0.147 0.853 30 H 0.169 0.831 31 H 0.174 0.826 32 H 0.189 0.811 33 H 0.187 0.813 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 11.532 -25.436 1.427 27.965 hybrid contribution 1.302 0.655 0.260 1.481 sum 12.835 -24.781 1.687 27.958 Atomic orbital electron populations 1.70083 1.07672 1.29408 1.46771 1.26571 0.96902 1.02451 0.94677 0.84550 0.77780 0.74692 0.79206 1.18776 1.18468 1.18514 1.21487 0.92244 0.81029 1.54952 0.89746 1.83890 1.40399 1.14283 1.76670 1.23881 0.86637 0.87888 0.76612 1.90524 1.16750 1.88535 1.51466 1.20987 0.97868 0.86935 1.08364 1.30165 1.11074 1.15254 1.14889 1.04272 0.74550 0.75906 0.73689 1.93543 1.71395 1.84650 1.45142 1.93539 1.71788 1.84653 1.45495 1.30184 1.23672 1.21895 0.98970 1.21089 0.92421 0.93104 0.97443 1.20889 0.98719 0.98936 0.97114 1.19387 0.89866 0.91836 0.93739 1.18967 0.97752 1.01024 0.85118 1.20323 0.91606 0.94829 0.98351 1.86326 1.67142 1.43449 1.26750 1.24059 0.94001 0.85370 1.02951 1.24102 0.93296 1.06877 0.81985 1.86334 1.42884 1.55024 1.38306 0.91134 0.85039 0.85329 0.83087 0.82558 0.81050 0.81318 0.82584 0.82549 0.89795 0.89716 0.82077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -53.20 13.67 21.62 0.30 -52.90 16 2 C -0.01 -0.32 5.49 84.87 0.47 0.15 16 3 Si 1.02 43.12 29.55 68.60 2.03 45.15 16 4 H -0.26 -10.94 7.11 99.48 0.71 -10.24 16 5 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 6 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 7 C -0.42 -25.34 9.64 67.94 0.66 -24.69 16 8 H 0.08 5.12 6.86 -2.91 -0.02 5.10 16 9 O -0.24 -14.19 9.75 14.86 0.14 -14.04 16 10 C 0.40 19.48 7.91 71.23 0.56 20.05 16 11 O -0.57 -29.92 15.22 20.75 0.32 -29.60 16 12 C -0.10 -3.45 5.82 29.85 0.17 -3.28 16 13 C -0.58 -15.26 5.27 71.98 0.38 -14.88 16 14 S 2.53 62.09 5.16 -56.49 -0.29 61.80 16 15 O -0.95 -26.74 17.12 -127.65 -2.18 -28.93 16 16 O -0.96 -28.39 17.12 -127.65 -2.19 -30.57 16 17 C -0.66 -14.75 5.66 22.26 0.13 -14.63 16 18 C -0.02 -0.42 9.46 22.27 0.21 -0.21 16 19 C -0.14 -2.47 9.96 22.37 0.22 -2.25 16 20 C 0.10 1.96 6.49 22.56 0.15 2.10 16 21 C 0.02 0.38 6.49 22.56 0.15 0.53 16 22 C -0.03 -0.73 9.38 22.37 0.21 -0.52 16 23 O -0.32 -6.24 10.42 -82.46 -0.86 -7.10 16 24 C 0.01 0.10 7.26 72.14 0.52 0.63 16 25 C 0.01 0.10 7.26 72.14 0.52 0.62 16 26 O -0.31 -5.07 10.42 -82.60 -0.86 -5.93 16 27 H 0.28 14.88 8.31 -92.71 -0.77 14.11 16 28 H 0.13 3.82 8.14 -2.38 -0.02 3.81 16 29 H 0.13 3.81 8.14 -2.39 -0.02 3.79 16 30 H 0.15 3.71 8.10 -2.39 -0.02 3.69 16 31 H 0.16 3.67 8.10 -2.38 -0.02 3.65 16 32 H 0.17 2.60 7.56 -2.91 -0.02 2.58 16 33 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 34 H 0.16 3.43 7.57 -2.91 -0.02 3.41 16 35 H 0.16 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 38 H 0.16 0.18 8.14 -2.39 -0.02 0.16 16 Total: -1.00 -85.59 349.24 1.86 -83.74 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.11 Total: 14.78 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 4.35 Total: -36.38 kcal Atomic # 7 Polarization: -53.20 SS G_CDS: 0.30 Total: -52.90 kcal Atomic # 8 Polarization: -110.55 SS G_CDS: -5.63 Total: -116.18 kcal Atomic # 14 Polarization: 43.12 SS G_CDS: 2.03 Total: 45.15 kcal Atomic # 16 Polarization: 62.09 SS G_CDS: -0.29 Total: 61.80 kcal Total: -85.59 1.86 -83.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000010766708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.819 kcal (2) G-P(sol) polarization free energy of solvation -85.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -218.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds