Wall clock time and date at job start Wed Apr 1 2020 00:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.99909 * 2 1 4 4 C 1.54325 * 109.88077 * 238.90847 * 2 1 3 5 5 H 1.08996 * 110.72483 * 144.41408 * 4 2 1 6 6 N 1.46505 * 110.72051 * 21.13757 * 4 2 1 7 7 C 1.36936 * 120.00199 * 160.02832 * 6 4 2 8 8 H 1.08005 * 119.99851 * 0.02562 * 7 6 4 9 9 C 1.38812 * 120.00312 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99783 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99875 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47022 * 90.00021 * 11 9 7 13 13 H 1.48501 * 109.46965 * 209.99678 * 11 9 7 14 14 H 1.48493 * 109.47134 * 329.99833 * 11 9 7 15 15 C 1.55157 * 102.94222 * 262.77722 * 4 2 1 16 16 C 1.54912 * 101.57990 * 324.49960 * 15 4 2 17 17 N 1.47016 * 109.88310 * 121.09939 * 2 1 3 18 18 C 1.34779 * 125.64819 * 300.44050 * 17 2 1 19 19 O 1.21625 * 119.99907 * 357.88651 * 18 17 2 20 20 C 1.47162 * 119.99968 * 177.89254 * 18 17 2 21 21 C 1.38400 * 126.87701 * 187.87478 * 20 18 17 22 22 C 1.39750 * 105.35333 * 179.97438 * 21 20 18 23 23 Br 1.89099 * 126.08120 * 180.02562 * 22 21 20 24 24 N 1.30913 * 107.83784 * 359.97438 * 22 21 20 25 25 N 1.28440 * 110.92538 * 359.74107 * 24 22 21 26 26 H 0.96993 * 125.18588 * 180.28793 * 25 24 22 27 27 H 1.08998 * 109.46576 * 300.35825 * 1 2 3 28 28 H 1.09004 * 109.46989 * 60.35531 * 1 2 3 29 29 H 1.08999 * 109.47327 * 180.35679 * 1 2 3 30 30 H 0.97004 * 120.00021 * 340.02373 * 6 4 2 31 31 H 0.96999 * 119.99809 * 180.02562 * 10 9 7 32 32 H 1.08998 * 111.00695 * 206.42244 * 15 4 2 33 33 H 1.09002 * 111.00421 * 82.56905 * 15 4 2 34 34 H 1.08999 * 110.37171 * 155.84925 * 16 15 4 35 35 H 1.09010 * 110.36537 * 278.06191 * 16 15 4 36 36 H 1.08003 * 127.32391 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 2.9656 -0.2832 -1.6183 6 7 1.0292 -0.8025 -2.2876 7 6 1.3876 -1.0415 -3.5874 8 1 2.4264 -1.1914 -3.8423 9 6 0.4159 -1.0912 -4.5775 10 7 -0.8501 -0.9091 -4.2667 11 14 0.9050 -1.4166 -6.3507 12 1 0.8887 -2.8790 -6.6083 13 1 -0.0559 -0.7430 -7.2608 14 1 2.2708 -0.8866 -6.5927 15 6 2.3518 -2.1695 -0.6926 16 6 2.8567 -1.8499 0.7366 17 7 2.0300 -0.7141 1.1838 18 6 1.7754 -0.3846 2.4656 19 8 1.1088 0.6006 2.7194 20 6 2.3040 -1.2167 3.5582 21 6 2.0096 -1.1032 4.9058 22 6 2.7506 -2.1088 5.5324 23 35 2.7811 -2.4786 7.3867 24 7 3.4191 -2.7500 4.6073 25 7 3.1781 -2.2603 3.4446 26 1 3.5604 -2.5810 2.6129 27 1 -0.3632 0.5194 0.8868 28 1 -0.3633 0.5083 -0.8932 29 1 -0.3634 -1.0276 0.0064 30 1 0.0962 -0.6683 -2.0586 31 1 -1.5291 -0.9442 -4.9585 32 1 3.1269 -2.6618 -1.2798 33 1 1.4451 -2.7736 -0.6606 34 1 2.7087 -2.7081 1.3921 35 1 3.9097 -1.5686 0.7129 36 1 1.3474 -0.3897 5.3736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000986324315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:36 Heat of formation + Delta-G solvation = 78.649876 kcal Electronic energy + Delta-G solvation = -21754.908440 eV Core-core repulsion = 18323.287069 eV Total energy + Delta-G solvation = -3431.621371 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 342.043 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -43.01050 -40.07636 -37.71178 -34.53192 -33.11425 -32.01869 -31.16434 -31.02264 -30.24857 -28.92908 -25.54324 -24.54238 -23.51580 -22.12660 -21.77840 -20.86780 -19.25167 -18.05727 -17.51581 -16.54800 -16.35324 -15.80439 -15.55349 -14.69641 -14.48873 -14.19693 -13.81582 -13.71747 -13.57581 -13.17594 -12.68495 -12.29874 -12.05689 -11.76185 -11.68123 -11.65860 -11.40896 -11.07917 -10.93351 -10.65529 -10.60647 -10.40617 -10.15076 -10.06616 -9.76709 -9.55402 -9.44611 -9.07317 -8.73210 -7.15484 -5.91868 -3.22843 0.92067 0.97181 1.91445 2.45033 2.82693 3.01636 3.34412 3.40099 3.42004 4.09656 4.36007 4.45311 4.56872 4.82993 4.95550 5.05375 5.11294 5.22213 5.34214 5.47884 5.59017 5.76563 5.82719 5.90175 6.03783 6.08670 6.33430 6.36617 6.38789 6.52251 6.65817 6.80983 7.30930 7.38511 7.56286 7.93389 8.26068 9.38144 9.90922 10.25673 11.30285 Molecular weight = 342.04amu Principal moments of inertia in cm(-1) A = 0.039429 B = 0.002265 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.959366 B =12357.999548 C =12740.802711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.130 3.870 3 H 0.079 0.921 4 C 0.175 3.825 5 H 0.067 0.933 6 N -0.716 5.716 7 C -0.249 4.249 8 H 0.072 0.928 9 C -0.008 4.008 10 N -0.929 5.929 11 Si 0.909 3.091 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.281 1.281 15 C -0.151 4.151 16 C 0.080 3.920 17 N -0.604 5.604 18 C 0.602 3.398 19 O -0.515 6.515 20 C -0.016 4.016 21 C -0.126 4.126 22 C 0.019 3.981 23 Br 0.034 6.966 24 N -0.242 5.242 25 N -0.367 5.367 26 H 0.451 0.549 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.058 0.942 30 H 0.392 0.608 31 H 0.258 0.742 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.947 -3.543 21.419 23.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.027 3.973 3 H 0.097 0.903 4 C 0.063 3.937 5 H 0.085 0.915 6 N -0.359 5.359 7 C -0.380 4.380 8 H 0.090 0.910 9 C -0.205 4.205 10 N -0.576 5.576 11 Si 0.740 3.260 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.207 1.207 15 C -0.192 4.192 16 C -0.044 4.044 17 N -0.338 5.338 18 C 0.388 3.612 19 O -0.389 6.389 20 C -0.145 4.145 21 C -0.156 4.156 22 C -0.217 4.217 23 Br 0.115 6.885 24 N -0.078 5.078 25 N -0.093 5.093 26 H 0.305 0.695 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.077 0.923 30 H 0.230 0.770 31 H 0.068 0.932 32 H 0.100 0.900 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.094 0.906 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges 9.349 -3.962 21.913 24.151 hybrid contribution -0.325 0.123 -1.604 1.641 sum 9.024 -3.838 20.309 22.552 Atomic orbital electron populations 1.22029 0.94095 1.02712 1.03052 1.21946 0.95743 0.95957 0.83656 0.90300 1.21173 0.93520 0.91668 0.87360 0.91546 1.42672 1.05145 1.85138 1.02949 1.19214 0.93099 1.41805 0.83902 0.90996 1.24772 0.95291 1.02159 0.98252 1.69653 0.99389 1.55818 1.32769 0.86169 0.77415 0.77780 0.84640 1.21627 1.21674 1.20664 1.23600 1.02078 1.01979 0.91573 1.22681 0.95330 0.87940 0.98480 1.48535 1.49969 1.30332 1.04957 1.16466 0.80607 0.84016 0.80114 1.90851 1.39185 1.26220 1.82652 1.21878 1.00760 0.95419 0.96393 1.22022 1.02753 1.00552 0.90308 1.23447 1.04111 1.00619 0.93573 1.96742 1.98431 1.95429 0.97850 1.73206 1.21513 1.22461 0.90625 1.44676 1.33250 1.23195 1.08144 0.69544 0.91961 0.89778 0.92326 0.76979 0.93241 0.89979 0.90178 0.92011 0.90630 0.80697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 7.94 37.16 0.30 -2.49 16 2 C 0.13 2.07 3.47 -66.95 -0.23 1.84 16 3 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 4 C 0.18 3.02 3.46 -66.09 -0.23 2.80 16 5 H 0.07 1.14 8.12 -51.93 -0.42 0.71 16 6 N -0.72 -16.15 5.02 -51.65 -0.26 -16.41 16 7 C -0.25 -6.35 9.98 -15.06 -0.15 -6.50 16 8 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 9 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 10 N -0.93 -26.57 13.06 55.49 0.72 -25.84 16 11 Si 0.91 21.19 29.55 -169.99 -5.02 16.17 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 15 C -0.15 -2.14 6.77 -24.58 -0.17 -2.31 16 16 C 0.08 0.86 5.51 -2.53 -0.01 0.85 16 17 N -0.60 -8.28 3.08 -164.37 -0.51 -8.79 16 18 C 0.60 8.75 7.60 -12.64 -0.10 8.66 16 19 O -0.51 -8.97 15.90 5.26 0.08 -8.89 16 20 C -0.02 -0.19 6.93 -82.06 -0.57 -0.76 16 21 C -0.13 -1.49 10.84 -38.96 -0.42 -1.91 16 22 C 0.02 0.21 7.72 -17.38 -0.13 0.08 16 23 Br 0.03 0.32 34.11 -68.01 -2.32 -2.00 16 24 N -0.24 -2.85 12.14 31.88 0.39 -2.46 16 25 N -0.37 -3.91 6.29 33.48 0.21 -3.70 16 26 H 0.45 3.71 5.24 -190.46 -1.00 2.72 16 27 H 0.06 1.07 6.81 -51.93 -0.35 0.72 16 28 H 0.08 1.59 6.72 -51.93 -0.35 1.25 16 29 H 0.06 1.04 8.06 -51.93 -0.42 0.62 16 30 H 0.39 9.43 4.93 -40.82 -0.20 9.22 16 31 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 33 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.06 0.56 5.52 -51.93 -0.29 0.27 16 35 H 0.08 0.65 8.13 -51.92 -0.42 0.23 16 36 H 0.18 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 318.35 15.07 4.80 4.80 Total: -1.00 -29.86 318.35 -8.41 -38.27 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -4.69 Total: 8.92 kcal Atomic # 6 Polarization: 1.75 SS G_CDS: -1.81 Total: -0.06 kcal Atomic # 7 Polarization: -57.76 SS G_CDS: 0.56 Total: -57.20 kcal Atomic # 8 Polarization: -8.97 SS G_CDS: 0.08 Total: -8.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 35 Polarization: 0.32 SS G_CDS: -2.32 Total: -2.00 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.86 -8.41 -38.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986324315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.916 kcal (2) G-P(sol) polarization free energy of solvation -29.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds