Wall clock time and date at job start Wed Apr 1 2020 00:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.99909 * 2 1 4 4 C 1.54325 * 109.88077 * 238.90847 * 2 1 3 5 5 H 1.08996 * 110.72483 * 144.41408 * 4 2 1 6 6 N 1.46505 * 110.72051 * 21.13757 * 4 2 1 7 7 C 1.36936 * 120.00199 * 160.02832 * 6 4 2 8 8 H 1.08005 * 119.99851 * 0.02562 * 7 6 4 9 9 C 1.38812 * 120.00312 * 180.02562 * 7 6 4 10 10 N 1.31618 * 119.99783 * 359.97438 * 9 7 6 11 11 Si 1.86801 * 119.99875 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.47022 * 90.00021 * 11 9 7 13 13 H 1.48501 * 109.46965 * 209.99678 * 11 9 7 14 14 H 1.48493 * 109.47134 * 329.99833 * 11 9 7 15 15 C 1.55157 * 102.94222 * 262.77722 * 4 2 1 16 16 C 1.54912 * 101.57990 * 324.49960 * 15 4 2 17 17 N 1.47016 * 109.88310 * 121.09939 * 2 1 3 18 18 C 1.34779 * 125.64819 * 300.44050 * 17 2 1 19 19 O 1.21625 * 119.99907 * 357.88651 * 18 17 2 20 20 C 1.47162 * 119.99968 * 177.89254 * 18 17 2 21 21 C 1.38400 * 126.87701 * 187.87478 * 20 18 17 22 22 C 1.39750 * 105.35333 * 179.97438 * 21 20 18 23 23 Br 1.89099 * 126.08120 * 180.02562 * 22 21 20 24 24 N 1.30913 * 107.83784 * 359.97438 * 22 21 20 25 25 N 1.28440 * 110.92538 * 359.74107 * 24 22 21 26 26 H 0.96993 * 125.18588 * 180.28793 * 25 24 22 27 27 H 1.08998 * 109.46576 * 300.35825 * 1 2 3 28 28 H 1.09004 * 109.46989 * 60.35531 * 1 2 3 29 29 H 1.08999 * 109.47327 * 180.35679 * 1 2 3 30 30 H 0.97004 * 120.00021 * 340.02373 * 6 4 2 31 31 H 0.96999 * 119.99809 * 180.02562 * 10 9 7 32 32 H 1.08998 * 111.00695 * 206.42244 * 15 4 2 33 33 H 1.09002 * 111.00421 * 82.56905 * 15 4 2 34 34 H 1.08999 * 110.37171 * 155.84925 * 16 15 4 35 35 H 1.09010 * 110.36537 * 278.06191 * 16 15 4 36 36 H 1.08003 * 127.32391 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9028 1.0243 0.0000 4 6 2.0548 -0.7494 -1.2428 5 1 2.9656 -0.2832 -1.6183 6 7 1.0292 -0.8025 -2.2876 7 6 1.3876 -1.0415 -3.5874 8 1 2.4264 -1.1914 -3.8423 9 6 0.4159 -1.0912 -4.5775 10 7 -0.8501 -0.9091 -4.2667 11 14 0.9050 -1.4166 -6.3507 12 1 0.8887 -2.8790 -6.6083 13 1 -0.0559 -0.7430 -7.2608 14 1 2.2708 -0.8866 -6.5927 15 6 2.3518 -2.1695 -0.6926 16 6 2.8567 -1.8499 0.7366 17 7 2.0300 -0.7141 1.1838 18 6 1.7754 -0.3846 2.4656 19 8 1.1088 0.6006 2.7194 20 6 2.3040 -1.2167 3.5582 21 6 2.0096 -1.1032 4.9058 22 6 2.7506 -2.1088 5.5324 23 35 2.7811 -2.4786 7.3867 24 7 3.4191 -2.7500 4.6073 25 7 3.1781 -2.2603 3.4446 26 1 3.5604 -2.5810 2.6129 27 1 -0.3632 0.5194 0.8868 28 1 -0.3633 0.5083 -0.8932 29 1 -0.3634 -1.0276 0.0064 30 1 0.0962 -0.6683 -2.0586 31 1 -1.5291 -0.9442 -4.9585 32 1 3.1269 -2.6618 -1.2798 33 1 1.4451 -2.7736 -0.6606 34 1 2.7087 -2.7081 1.3921 35 1 3.9097 -1.5686 0.7129 36 1 1.3474 -0.3897 5.3736 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000986324315.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:14:36 Heat of formation + Delta-G solvation = 58.831472 kcal Electronic energy + Delta-G solvation = -21755.767830 eV Core-core repulsion = 18323.287069 eV Total energy + Delta-G solvation = -3432.480761 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 342.043 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.91994 -41.27024 -38.98902 -36.09778 -34.19726 -33.40495 -32.39346 -32.13865 -31.23938 -30.39204 -26.95700 -25.85620 -25.08368 -23.19822 -22.71925 -21.90535 -20.58687 -19.46161 -19.02609 -17.59805 -17.39548 -16.97144 -16.81148 -16.28860 -15.84776 -15.41877 -15.15868 -14.90500 -14.65611 -14.51825 -14.02873 -13.67934 -13.34183 -13.13676 -12.95848 -12.86256 -12.65280 -12.59527 -12.45245 -12.10667 -12.06642 -11.65261 -11.59800 -11.39706 -11.27230 -10.92925 -10.52704 -10.27524 -9.88212 -9.02222 -7.93590 -5.22604 -0.05868 0.15163 1.01145 1.42857 1.51149 1.51425 1.59619 1.83814 1.94663 2.57834 3.09951 3.37872 3.45520 3.53250 3.71997 3.84103 4.04632 4.06731 4.21696 4.22346 4.27013 4.44181 4.51363 4.61112 4.77745 4.93121 4.98306 5.15547 5.16082 5.23008 5.44131 5.55931 5.59735 6.22460 6.28152 6.46463 6.79728 7.35998 8.08920 8.31472 9.29938 Molecular weight = 342.04amu Principal moments of inertia in cm(-1) A = 0.039429 B = 0.002265 C = 0.002197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.959366 B =12357.999548 C =12740.802711 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.137 3.863 3 H 0.078 0.922 4 C 0.167 3.833 5 H 0.075 0.925 6 N -0.732 5.732 7 C -0.237 4.237 8 H 0.084 0.916 9 C -0.075 4.075 10 N -0.970 5.970 11 Si 0.970 3.030 12 H -0.289 1.289 13 H -0.302 1.302 14 H -0.267 1.267 15 C -0.142 4.142 16 C 0.084 3.916 17 N -0.602 5.602 18 C 0.604 3.396 19 O -0.550 6.550 20 C -0.024 4.024 21 C -0.127 4.127 22 C 0.009 3.991 23 Br 0.052 6.948 24 N -0.244 5.244 25 N -0.352 5.352 26 H 0.461 0.539 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.048 0.952 30 H 0.381 0.619 31 H 0.250 0.750 32 H 0.098 0.902 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.303 -4.575 22.503 25.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.033 3.967 3 H 0.096 0.904 4 C 0.057 3.943 5 H 0.093 0.907 6 N -0.374 5.374 7 C -0.368 4.368 8 H 0.102 0.898 9 C -0.267 4.267 10 N -0.621 5.621 11 Si 0.800 3.200 12 H -0.216 1.216 13 H -0.229 1.229 14 H -0.192 1.192 15 C -0.183 4.183 16 C -0.038 4.038 17 N -0.335 5.335 18 C 0.392 3.608 19 O -0.427 6.427 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.226 4.226 23 Br 0.133 6.867 24 N -0.080 5.080 25 N -0.080 5.080 26 H 0.317 0.683 27 H 0.078 0.922 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.217 0.783 31 H 0.059 0.941 32 H 0.117 0.883 33 H 0.078 0.922 34 H 0.105 0.895 35 H 0.130 0.870 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 11.786 -5.026 23.022 26.347 hybrid contribution -0.999 0.441 -1.807 2.111 sum 10.787 -4.585 21.215 24.237 Atomic orbital electron populations 1.21860 0.95431 1.01635 1.01743 1.21687 0.94541 0.96142 0.84314 0.90425 1.21398 0.92397 0.93923 0.86631 0.90699 1.42853 1.05814 1.85383 1.03389 1.19638 0.93372 1.38805 0.85025 0.89829 1.25528 0.95421 1.03779 1.01967 1.69812 1.00341 1.58602 1.33320 0.85183 0.77259 0.77274 0.80271 1.21606 1.22921 1.19186 1.23378 1.01916 0.99218 0.93761 1.22862 0.96541 0.87868 0.96571 1.48476 1.50065 1.30771 1.04196 1.16655 0.79997 0.83730 0.80442 1.90835 1.40811 1.27847 1.83193 1.21520 1.01887 0.96112 0.95815 1.22229 1.02569 1.00615 0.90273 1.23675 1.03919 1.00466 0.94565 1.96764 1.98383 1.95313 0.96211 1.73207 1.21473 1.22448 0.90917 1.44635 1.32549 1.22387 1.08410 0.68325 0.92166 0.92003 0.93260 0.78264 0.94142 0.88332 0.92213 0.89520 0.86952 0.79945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 7.94 71.98 0.57 -4.70 16 2 C 0.14 4.28 3.47 45.34 0.16 4.44 16 3 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 4 C 0.17 5.54 3.46 46.18 0.16 5.70 16 5 H 0.08 2.39 8.12 -2.39 -0.02 2.37 16 6 N -0.73 -33.12 5.02 -317.32 -1.59 -34.72 16 7 C -0.24 -11.95 9.98 84.03 0.84 -11.11 16 8 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 9 C -0.07 -4.04 5.50 84.86 0.47 -3.57 16 10 N -0.97 -57.02 13.06 21.65 0.28 -56.74 16 11 Si 0.97 43.80 29.55 68.60 2.03 45.83 16 12 H -0.29 -12.87 7.11 99.48 0.71 -12.16 16 13 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 14 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 15 C -0.14 -3.69 6.77 31.99 0.22 -3.47 16 16 C 0.08 1.54 5.51 86.86 0.48 2.01 16 17 N -0.60 -15.37 3.08 -792.18 -2.44 -17.81 16 18 C 0.60 16.67 7.60 86.59 0.66 17.32 16 19 O -0.55 -18.91 15.90 -4.11 -0.07 -18.97 16 20 C -0.02 -0.55 6.93 40.78 0.28 -0.27 16 21 C -0.13 -2.76 10.84 22.67 0.25 -2.51 16 22 C 0.01 0.19 7.72 85.20 0.66 0.84 16 23 Br 0.05 0.87 34.11 -20.37 -0.69 0.18 16 24 N -0.24 -5.05 12.14 -53.06 -0.64 -5.70 16 25 N -0.35 -6.42 6.29 -48.00 -0.30 -6.72 16 26 H 0.46 5.80 5.24 -220.02 -1.15 4.64 16 27 H 0.06 2.13 6.81 -2.39 -0.02 2.12 16 28 H 0.06 2.46 6.72 -2.38 -0.02 2.45 16 29 H 0.05 1.80 8.06 -2.39 -0.02 1.78 16 30 H 0.38 18.86 4.93 -92.70 -0.46 18.40 16 31 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 32 H 0.10 2.27 8.14 -2.39 -0.02 2.25 16 33 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.09 1.21 5.52 -2.39 -0.01 1.19 16 35 H 0.11 1.35 8.13 -2.38 -0.02 1.33 16 36 H 0.18 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -64.99 318.35 0.84 -64.15 By element: Atomic # 1 Polarization: 26.28 SS G_CDS: -0.47 Total: 25.81 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: 4.73 Total: 4.69 kcal Atomic # 7 Polarization: -116.99 SS G_CDS: -4.70 Total: -121.68 kcal Atomic # 8 Polarization: -18.91 SS G_CDS: -0.07 Total: -18.97 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 35 Polarization: 0.87 SS G_CDS: -0.69 Total: 0.18 kcal Total: -64.99 0.84 -64.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000986324315.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.981 kcal (2) G-P(sol) polarization free energy of solvation -64.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.995 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.836 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.149 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds