Wall clock time and date at job start Wed Apr 1 2020 01:51:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00109 * 2 1 4 4 H 1.48498 * 109.47413 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47205 * 299.99957 * 3 2 1 6 6 H 1.48505 * 109.46706 * 59.99762 * 3 2 1 7 7 C 1.37879 * 120.00121 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99846 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99825 * 0.02562 * 7 2 1 10 10 H 1.09005 * 109.47524 * 59.99543 * 9 7 2 11 11 N 1.46499 * 109.47066 * 179.97438 * 9 7 2 12 12 C 1.34781 * 119.99902 * 204.99837 * 11 9 7 13 13 O 1.21545 * 120.00034 * 359.97438 * 12 11 9 14 14 C 1.47890 * 119.99885 * 180.02562 * 12 11 9 15 15 C 1.38805 * 119.32607 * 179.97438 * 14 12 11 16 16 C 1.39859 * 118.37192 * 180.02562 * 15 14 12 17 17 C 1.41398 * 122.94788 * 179.97438 * 16 15 14 18 18 O 1.35217 * 120.99814 * 0.02904 * 17 16 15 19 19 N 1.32499 * 118.00645 * 179.77946 * 17 16 15 20 20 C 1.32354 * 121.48904 * 0.50594 * 19 17 16 21 21 N 1.31303 * 123.09495 * 359.46805 * 20 19 17 22 22 C 1.33698 * 120.36904 * 0.25792 * 21 20 19 23 23 C 1.40614 * 122.62330 * 179.97438 * 22 21 20 24 24 N 1.30917 * 120.15679 * 180.02562 * 23 22 21 25 25 C 1.53007 * 109.47064 * 299.99554 * 9 7 2 26 26 F 1.39891 * 109.47120 * 300.00161 * 25 9 7 27 27 F 1.39904 * 109.46887 * 60.00176 * 25 9 7 28 28 F 1.39899 * 109.46822 * 180.02562 * 25 9 7 29 29 H 0.96998 * 119.99741 * 0.02562 * 1 2 3 30 30 H 0.96994 * 119.99957 * 25.00108 * 11 9 7 31 31 H 1.07995 * 120.81330 * 0.04305 * 15 14 12 32 32 H 0.96702 * 114.00065 * 89.99642 * 18 17 16 33 33 H 1.08002 * 118.45561 * 179.75566 * 20 19 17 34 34 H 1.08001 * 119.91895 * 0.05603 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3464 0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 1 0.6247 -2.5571 -0.8897 11 7 2.2031 -3.6126 0.0005 12 6 1.8369 -4.8123 -0.4927 13 8 0.7167 -4.9704 -0.9371 14 6 2.7978 -5.9365 -0.4922 15 6 2.4057 -7.1661 -1.0031 16 6 3.3302 -8.2156 -0.9923 17 6 3.0338 -9.5065 -1.4872 18 8 1.8177 -9.7916 -2.0051 19 7 3.9852 -10.4272 -1.4329 20 6 5.1773 -10.1603 -0.9235 21 7 5.5070 -8.9807 -0.4503 22 6 4.6237 -7.9771 -0.4611 23 6 4.9258 -6.6959 0.0335 24 7 4.0233 -5.7482 -0.0004 25 6 0.3711 -2.5799 1.2496 26 9 1.1750 -2.5055 2.3920 27 9 -0.5381 -1.5165 1.2490 28 9 -0.3280 -3.7917 1.2498 29 1 -0.4850 0.8400 -0.0004 30 1 3.0969 -3.4865 0.3555 31 1 1.4114 -7.3088 -1.3996 32 1 1.7483 -9.6328 -2.9565 33 1 5.9151 -10.9486 -0.9000 34 1 5.9049 -6.4933 0.4418 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365214321.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:51:33 Heat of formation + Delta-G solvation = -123.071867 kcal Electronic energy + Delta-G solvation = -29535.968315 eV Core-core repulsion = 24634.770334 eV Total energy + Delta-G solvation = -4901.197981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.073 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -48.39289 -46.04680 -45.65393 -42.09117 -39.78135 -38.49143 -37.94691 -34.85389 -33.76563 -33.05650 -32.50638 -30.94477 -28.53151 -25.86893 -25.61003 -24.59323 -23.17860 -22.27327 -20.67118 -19.90758 -18.96312 -18.85943 -17.55785 -17.05781 -16.89472 -16.67392 -16.33132 -16.18594 -15.45081 -15.31338 -14.99322 -14.75606 -14.72393 -14.53879 -14.28693 -13.82366 -13.21456 -13.04027 -12.94521 -12.67531 -12.53383 -12.43751 -12.31840 -12.02325 -11.85919 -11.32361 -11.28548 -11.20478 -10.90325 -10.85730 -10.58080 -10.53936 -10.44118 -9.84557 -9.70043 -9.45606 -8.85351 -8.76571 -8.35526 -6.27721 -4.51612 -0.50685 0.01849 1.16055 2.26308 2.70534 3.16186 3.21305 3.24059 3.27078 3.38238 3.53205 3.66880 3.77766 3.94116 4.15092 4.21513 4.32318 4.51961 4.70067 4.78773 4.89358 5.06886 5.36918 5.39090 5.65281 5.77168 5.81953 5.90989 6.16275 6.36860 6.79159 6.82299 7.02182 7.30892 7.43217 7.53795 7.58862 8.19685 8.43975 8.68169 9.16215 10.64019 Molecular weight = 342.07amu Principal moments of inertia in cm(-1) A = 0.020574 B = 0.003043 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.627738 B = 9198.761129 C = 9812.634767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.065 3.935 3 Si 0.916 3.084 4 H -0.269 1.269 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.551 4.551 8 H 0.080 0.920 9 C 0.242 3.758 10 H 0.088 0.912 11 N -0.685 5.685 12 C 0.560 3.440 13 O -0.526 6.526 14 C 0.069 3.931 15 C -0.051 4.051 16 C -0.160 4.160 17 C 0.422 3.578 18 O -0.464 6.464 19 N -0.538 5.538 20 C 0.325 3.675 21 N -0.494 5.494 22 C 0.126 3.874 23 C 0.157 3.843 24 N -0.425 5.425 25 C 0.417 3.583 26 F -0.207 7.207 27 F -0.135 7.135 28 F -0.218 7.218 29 H 0.268 0.732 30 H 0.410 0.590 31 H 0.166 0.834 32 H 0.418 0.582 33 H 0.207 0.793 34 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.954 -15.435 -3.383 18.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.144 4.144 3 Si 0.743 3.257 4 H -0.193 1.193 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.588 4.588 8 H 0.098 0.902 9 C 0.137 3.863 10 H 0.106 0.894 11 N -0.334 5.334 12 C 0.343 3.657 13 O -0.402 6.402 14 C -0.058 4.058 15 C -0.074 4.074 16 C -0.171 4.171 17 C 0.220 3.780 18 O -0.272 6.272 19 N -0.264 5.264 20 C 0.036 3.964 21 N -0.210 5.210 22 C -0.004 4.004 23 C -0.018 4.018 24 N -0.136 5.136 25 C 0.361 3.639 26 F -0.189 7.189 27 F -0.116 7.116 28 F -0.200 7.200 29 H 0.079 0.921 30 H 0.246 0.754 31 H 0.184 0.816 32 H 0.280 0.720 33 H 0.223 0.777 34 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 8.553 -15.259 -2.779 17.712 hybrid contribution -0.155 0.615 -0.280 0.693 sum 8.398 -14.644 -3.059 17.156 Atomic orbital electron populations 1.70406 1.05873 1.27362 1.43629 1.25088 0.95171 1.00179 0.93955 0.86133 0.79880 0.81802 0.77897 1.19292 1.20549 1.20528 1.20921 0.93964 0.87871 1.56075 0.90157 1.19857 0.88704 0.85747 0.92007 0.89448 1.45960 1.17856 1.09688 1.59886 1.17721 0.86078 0.82504 0.79433 1.90814 1.19750 1.82676 1.46981 1.21385 0.91670 0.94522 0.98211 1.22096 1.00288 0.90458 0.94586 1.19743 0.96699 0.95642 1.05002 1.19560 0.84309 0.85813 0.88320 1.84623 1.24294 1.88719 1.29611 1.68045 1.02152 1.36333 1.19839 1.24905 0.90539 0.93232 0.87678 1.68698 1.34485 1.00661 1.17204 1.20118 0.88995 0.95902 0.95431 1.23098 0.99127 0.85073 0.94536 1.67495 1.01062 1.33802 1.11261 1.23109 0.80862 0.72854 0.87108 1.92997 1.74383 1.96166 1.55382 1.93414 1.68327 1.53680 1.96191 1.93068 1.81526 1.48435 1.96980 0.92107 0.75355 0.81649 0.71990 0.77667 0.79680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -22.63 9.50 55.43 0.53 -22.10 16 2 C 0.06 1.66 5.20 -17.82 -0.09 1.57 16 3 Si 0.92 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 6 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 7 C -0.55 -13.90 8.46 -34.44 -0.29 -14.19 16 8 H 0.08 1.93 7.74 -52.49 -0.41 1.52 16 9 C 0.24 5.94 2.21 -69.08 -0.15 5.78 16 10 H 0.09 2.35 7.58 -51.93 -0.39 1.96 16 11 N -0.69 -14.22 4.97 -55.86 -0.28 -14.50 16 12 C 0.56 11.00 7.33 -12.31 -0.09 10.91 16 13 O -0.53 -11.67 14.86 5.33 0.08 -11.60 16 14 C 0.07 1.07 6.74 -83.03 -0.56 0.51 16 15 C -0.05 -0.67 9.23 -38.77 -0.36 -1.03 16 16 C -0.16 -1.87 5.76 -106.71 -0.61 -2.48 16 17 C 0.42 4.33 7.91 -16.06 -0.13 4.21 16 18 O -0.46 -3.86 13.04 -17.35 -0.23 -4.09 16 19 N -0.54 -5.37 10.42 -14.23 -0.15 -5.52 16 20 C 0.33 2.79 12.21 -92.09 -1.12 1.67 16 21 N -0.49 -5.04 10.46 -12.54 -0.13 -5.18 16 22 C 0.13 1.44 6.64 -84.78 -0.56 0.88 16 23 C 0.16 1.77 11.26 -17.05 -0.19 1.57 16 24 N -0.43 -5.98 9.43 -9.47 -0.09 -6.07 16 25 C 0.42 10.61 2.81 37.16 0.10 10.72 16 26 F -0.21 -5.13 16.94 2.25 0.04 -5.09 16 27 F -0.14 -3.69 12.91 2.25 0.03 -3.66 16 28 F -0.22 -5.48 15.67 2.25 0.04 -5.44 16 29 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 30 H 0.41 7.78 7.84 -40.82 -0.32 7.46 16 31 H 0.17 2.07 7.38 -52.49 -0.39 1.68 16 32 H 0.42 1.26 9.06 45.56 0.41 1.67 16 33 H 0.21 0.94 8.06 -52.49 -0.42 0.51 16 34 H 0.19 1.52 8.06 -52.49 -0.42 1.09 16 LS Contribution 318.85 15.07 4.81 4.81 Total: -1.00 -32.14 318.85 -5.52 -37.66 By element: Atomic # 1 Polarization: 6.92 SS G_CDS: -1.07 Total: 5.84 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: -4.06 Total: 20.12 kcal Atomic # 7 Polarization: -53.25 SS G_CDS: -0.12 Total: -53.37 kcal Atomic # 8 Polarization: -15.54 SS G_CDS: -0.15 Total: -15.69 kcal Atomic # 9 Polarization: -14.30 SS G_CDS: 0.10 Total: -14.20 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -32.14 -5.52 -37.66 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365214321.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.417 kcal (2) G-P(sol) polarization free energy of solvation -32.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds