Wall clock time and date at job start Wed Apr 1 2020 00:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31595 * 122.22744 * 2 1 4 4 C 1.29944 * 117.13484 * 180.20056 * 3 2 1 5 5 N 1.38896 * 125.36596 * 179.83894 * 4 3 2 6 6 C 1.34768 * 120.00005 * 179.71280 * 5 4 3 7 7 O 1.21291 * 120.00435 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99667 * 179.97438 * 6 5 4 9 9 H 1.08996 * 112.90790 * 48.75582 * 8 6 5 10 10 C 1.53779 * 113.61501 * 277.49605 * 8 6 5 11 11 C 1.53787 * 87.08223 * 220.02362 * 10 8 6 12 12 C 1.53781 * 87.07987 * 25.43200 * 11 10 8 13 13 H 1.09002 * 113.61228 * 89.11929 * 12 11 10 14 14 C 1.50701 * 113.61206 * 219.93687 * 12 11 10 15 15 O 1.20824 * 119.99958 * 99.14280 * 14 12 11 16 16 O 1.34225 * 120.00160 * 279.13729 * 14 12 11 17 17 S 1.76141 * 109.26986 * 359.57029 * 4 3 2 18 18 C 1.34653 * 122.22950 * 179.72514 * 2 1 3 19 19 S 1.76202 * 125.93223 * 0.05581 * 18 2 1 20 20 C 1.76205 * 99.99906 * 179.97438 * 19 18 2 21 21 H 1.07997 * 119.99495 * 359.97438 * 20 19 18 22 22 C 1.38427 * 119.99842 * 179.97438 * 20 19 18 23 23 N 1.31802 * 119.99738 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99952 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46890 * 90.00073 * 24 22 20 26 26 H 1.48498 * 109.47016 * 209.99515 * 24 22 20 27 27 H 1.48498 * 109.47323 * 330.00148 * 24 22 20 28 28 H 1.09004 * 109.46862 * 270.27370 * 1 2 3 29 29 H 1.08992 * 109.47508 * 30.27633 * 1 2 3 30 30 H 1.09003 * 109.47363 * 150.27836 * 1 2 3 31 31 H 0.97000 * 119.99151 * 359.71632 * 5 4 3 32 32 H 1.08994 * 113.61314 * 105.47237 * 10 8 6 33 33 H 1.09005 * 113.69135 * 334.57862 * 10 8 6 34 34 H 1.09005 * 113.61051 * 270.88604 * 11 10 8 35 35 H 1.08993 * 113.61359 * 139.98641 * 11 10 8 36 36 H 0.96700 * 117.00579 * 180.02562 * 16 14 12 37 37 H 0.97008 * 120.00103 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 -0.0040 5 7 4.4044 2.0547 -0.0079 6 6 5.7297 1.8101 -0.0061 7 8 6.1355 0.6671 -0.0006 8 6 6.7075 2.9568 -0.0109 9 1 6.4787 3.7126 0.7404 10 6 6.9681 3.5384 -1.4104 11 6 8.4458 3.6550 -1.0008 12 6 8.1794 2.5112 -0.0081 13 1 8.3362 1.5195 -0.4323 14 6 8.8648 2.6940 1.3215 15 8 8.2469 3.1269 2.2653 16 8 10.1617 2.3759 1.4574 17 16 3.9345 -0.7099 0.0040 18 6 2.2251 -1.1390 0.0055 19 16 1.5697 -2.7746 0.0119 20 6 3.0666 -3.7041 0.0164 21 1 4.0187 -3.1943 0.0142 22 6 3.0222 -5.0876 0.0226 23 7 4.1420 -5.7829 0.0254 24 14 1.3753 -5.9692 0.0270 25 1 0.9386 -6.2091 -1.3720 26 1 1.5114 -7.2687 0.7327 27 1 0.3669 -5.1308 0.7235 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3634 -0.8925 -0.5095 31 1 4.0798 2.9688 -0.0119 32 1 6.4848 4.5004 -1.5804 33 1 6.7939 2.8285 -2.2191 34 1 8.6921 4.6019 -0.5202 35 1 9.1417 3.3895 -1.7965 36 1 10.5577 2.5101 2.3293 37 1 4.1109 -6.7524 0.0293 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574421182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:40 Heat of formation + Delta-G solvation = -69.476428 kcal Electronic energy + Delta-G solvation = -24218.738844 eV Core-core repulsion = 20407.625746 eV Total energy + Delta-G solvation = -3811.113097 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.40088 -39.99779 -38.78944 -37.74240 -36.28518 -34.82648 -32.76016 -30.73397 -27.98692 -27.53745 -27.05041 -25.90102 -23.62022 -22.55258 -21.35165 -20.30537 -19.48957 -18.59703 -18.06535 -17.82281 -17.31133 -16.70323 -15.97676 -15.83221 -15.39247 -15.33626 -15.09428 -14.47136 -14.09749 -14.06839 -13.36964 -13.22569 -13.01683 -12.79469 -12.65031 -12.19609 -12.12463 -11.97382 -11.84399 -11.58725 -11.52502 -11.33410 -11.30867 -11.07756 -10.77537 -10.66082 -10.63662 -10.14105 -9.90063 -9.47139 -9.17452 -8.86277 -8.78232 -7.89897 -6.73496 -6.55945 -4.29253 1.28812 1.78492 1.90542 2.34976 2.43631 2.61931 2.79512 2.97533 3.10020 3.19885 3.37379 3.50930 3.75509 3.97586 4.02785 4.15488 4.36411 4.48198 4.69470 4.84036 5.03990 5.09631 5.12424 5.21952 5.28555 5.40363 5.40503 5.81875 5.85625 6.04848 6.12275 6.22023 6.33344 6.39332 6.86350 7.09359 7.61682 7.66906 7.90177 8.23486 8.41765 8.83774 10.51929 Molecular weight = 342.05amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.003084 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.444009 B = 9076.981824 C =10402.328294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.031 3.969 3 N -0.480 5.480 4 C 0.192 3.808 5 N -0.611 5.611 6 C 0.516 3.484 7 O -0.501 6.501 8 C -0.110 4.110 9 H 0.134 0.866 10 C -0.123 4.123 11 C -0.118 4.118 12 C -0.089 4.089 13 H 0.144 0.856 14 C 0.492 3.508 15 O -0.514 6.514 16 O -0.512 6.512 17 S 0.231 5.769 18 C -0.239 4.239 19 S 0.055 5.945 20 C -0.545 4.545 21 H 0.105 0.895 22 C 0.102 3.898 23 N -0.857 5.857 24 Si 0.852 3.148 25 H -0.261 1.261 26 H -0.265 1.265 27 H -0.236 1.236 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.416 0.584 32 H 0.090 0.910 33 H 0.097 0.903 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.410 0.590 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.508 19.207 -2.031 20.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.111 4.111 3 N -0.202 5.202 4 C -0.179 4.179 5 N -0.260 5.260 6 C 0.301 3.699 7 O -0.374 6.374 8 C -0.132 4.132 9 H 0.151 0.849 10 C -0.160 4.160 11 C -0.156 4.156 12 C -0.109 4.109 13 H 0.162 0.838 14 C 0.334 3.666 15 O -0.402 6.402 16 O -0.324 6.324 17 S 0.476 5.524 18 C -0.475 4.475 19 S 0.302 5.698 20 C -0.694 4.694 21 H 0.122 0.878 22 C -0.109 4.109 23 N -0.490 5.490 24 Si 0.675 3.325 25 H -0.185 1.185 26 H -0.190 1.190 27 H -0.160 1.160 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.089 0.911 31 H 0.253 0.747 32 H 0.109 0.891 33 H 0.116 0.884 34 H 0.110 0.890 35 H 0.110 0.890 36 H 0.269 0.731 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.190 17.659 -2.141 18.835 hybrid contribution -0.005 0.396 0.784 0.879 sum 6.185 18.056 -1.357 19.134 Atomic orbital electron populations 1.20147 0.87980 1.02206 1.01933 1.19113 0.96795 0.84593 1.10582 1.65866 1.02875 1.32171 1.19270 1.23997 0.90037 0.93448 1.10384 1.42386 1.04333 1.08135 1.71134 1.20560 0.81818 0.91075 0.76403 1.90729 1.76993 1.22280 1.47441 1.22735 0.91786 0.97060 1.01586 0.84857 1.22886 0.96201 1.02416 0.94542 1.22838 0.97666 0.97115 0.97972 1.22455 0.93026 1.04134 0.91248 0.83840 1.23186 0.79854 0.72922 0.90629 1.90729 1.65774 1.42280 1.41409 1.84536 1.26479 1.79810 1.41546 1.86165 1.00651 0.94403 1.71148 1.28165 1.01672 1.04499 1.13140 1.82459 1.13462 0.89157 1.84736 1.22665 0.92400 0.94503 1.59797 0.87768 1.24736 0.97377 0.96219 0.92599 1.70008 1.26470 1.07676 1.44895 0.86815 0.83889 0.81389 0.80364 1.18548 1.18973 1.15970 0.91703 0.91699 0.91086 0.74656 0.89122 0.88418 0.89003 0.88996 0.73085 0.91310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.05 10.02 36.01 0.36 -0.69 16 2 C 0.03 0.64 6.73 -83.96 -0.57 0.07 16 3 N -0.48 -9.39 10.55 -9.78 -0.10 -9.49 16 4 C 0.19 3.63 8.40 -87.19 -0.73 2.89 16 5 N -0.61 -8.70 5.40 -11.78 -0.06 -8.76 16 6 C 0.52 7.20 7.32 -10.99 -0.08 7.12 16 7 O -0.50 -9.04 13.42 5.55 0.07 -8.97 16 8 C -0.11 -1.02 3.47 -90.96 -0.32 -1.34 16 9 H 0.13 1.11 7.46 -51.93 -0.39 0.73 16 10 C -0.12 -0.75 7.63 -25.92 -0.20 -0.95 16 11 C -0.12 -0.68 7.63 -25.92 -0.20 -0.87 16 12 C -0.09 -0.82 3.58 -90.96 -0.33 -1.15 16 13 H 0.14 1.47 7.43 -51.93 -0.39 1.09 16 14 C 0.49 5.18 7.85 36.01 0.28 5.46 16 15 O -0.51 -6.90 16.68 -18.75 -0.31 -7.21 16 16 O -0.51 -4.23 13.42 -39.24 -0.53 -4.75 16 17 S 0.23 5.14 18.35 -107.50 -1.97 3.17 16 18 C -0.24 -5.41 6.67 29.46 0.20 -5.22 16 19 S 0.05 1.31 18.70 -107.50 -2.01 -0.71 16 20 C -0.55 -15.22 9.80 30.80 0.30 -14.92 16 21 H 0.10 3.12 6.21 -52.49 -0.33 2.79 16 22 C 0.10 2.83 5.49 -17.49 -0.10 2.73 16 23 N -0.86 -24.77 13.98 55.47 0.78 -23.99 16 24 Si 0.85 19.69 27.73 -169.99 -4.71 14.97 16 25 H -0.26 -5.91 7.11 56.52 0.40 -5.51 16 26 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 27 H -0.24 -5.22 6.73 56.52 0.38 -4.83 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 30 H 0.07 1.16 7.37 -51.93 -0.38 0.77 16 31 H 0.42 4.40 8.82 -40.82 -0.36 4.04 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.10 0.66 8.10 -51.93 -0.42 0.24 16 34 H 0.09 0.44 8.09 -51.93 -0.42 0.02 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.41 1.70 9.10 45.56 0.41 2.12 16 37 H 0.28 7.33 8.32 -40.82 -0.34 6.99 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -35.30 347.25 -8.10 -43.40 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -3.12 Total: 3.98 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -1.37 Total: -6.86 kcal Atomic # 7 Polarization: -42.86 SS G_CDS: 0.61 Total: -42.25 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: -0.77 Total: -20.93 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -4.71 Total: 14.97 kcal Atomic # 16 Polarization: 6.44 SS G_CDS: -3.98 Total: 2.46 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -35.30 -8.10 -43.40 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574421182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.073 kcal (2) G-P(sol) polarization free energy of solvation -35.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.104 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds