Wall clock time and date at job start Wed Apr 1 2020 00:10:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31595 * 122.22744 * 2 1 4 4 C 1.29944 * 117.13484 * 180.20056 * 3 2 1 5 5 N 1.38896 * 125.36596 * 179.83894 * 4 3 2 6 6 C 1.34768 * 120.00005 * 179.71280 * 5 4 3 7 7 O 1.21291 * 120.00435 * 359.97438 * 6 5 4 8 8 C 1.50705 * 119.99667 * 179.97438 * 6 5 4 9 9 H 1.08996 * 112.90790 * 48.75582 * 8 6 5 10 10 C 1.53779 * 113.61501 * 277.49605 * 8 6 5 11 11 C 1.53787 * 87.08223 * 220.02362 * 10 8 6 12 12 C 1.53781 * 87.07987 * 25.43200 * 11 10 8 13 13 H 1.09002 * 113.61228 * 89.11929 * 12 11 10 14 14 C 1.50701 * 113.61206 * 219.93687 * 12 11 10 15 15 O 1.20824 * 119.99958 * 99.14280 * 14 12 11 16 16 O 1.34225 * 120.00160 * 279.13729 * 14 12 11 17 17 S 1.76141 * 109.26986 * 359.57029 * 4 3 2 18 18 C 1.34653 * 122.22950 * 179.72514 * 2 1 3 19 19 S 1.76202 * 125.93223 * 0.05581 * 18 2 1 20 20 C 1.76205 * 99.99906 * 179.97438 * 19 18 2 21 21 H 1.07997 * 119.99495 * 359.97438 * 20 19 18 22 22 C 1.38427 * 119.99842 * 179.97438 * 20 19 18 23 23 N 1.31802 * 119.99738 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99952 * 359.97438 * 22 20 19 25 25 H 1.48500 * 109.46890 * 90.00073 * 24 22 20 26 26 H 1.48498 * 109.47016 * 209.99515 * 24 22 20 27 27 H 1.48498 * 109.47323 * 330.00148 * 24 22 20 28 28 H 1.09004 * 109.46862 * 270.27370 * 1 2 3 29 29 H 1.08992 * 109.47508 * 30.27633 * 1 2 3 30 30 H 1.09003 * 109.47363 * 150.27836 * 1 2 3 31 31 H 0.97000 * 119.99151 * 359.71632 * 5 4 3 32 32 H 1.08994 * 113.61314 * 105.47237 * 10 8 6 33 33 H 1.09005 * 113.69135 * 334.57862 * 10 8 6 34 34 H 1.09005 * 113.61051 * 270.88604 * 11 10 8 35 35 H 1.08993 * 113.61359 * 139.98641 * 11 10 8 36 36 H 0.96700 * 117.00579 * 180.02562 * 16 14 12 37 37 H 0.97008 * 120.00103 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1132 0.0000 4 6 3.5031 0.9979 -0.0040 5 7 4.4044 2.0547 -0.0079 6 6 5.7297 1.8101 -0.0061 7 8 6.1355 0.6671 -0.0006 8 6 6.7075 2.9568 -0.0109 9 1 6.4787 3.7126 0.7404 10 6 6.9681 3.5384 -1.4104 11 6 8.4458 3.6550 -1.0008 12 6 8.1794 2.5112 -0.0081 13 1 8.3362 1.5195 -0.4323 14 6 8.8648 2.6940 1.3215 15 8 8.2469 3.1269 2.2653 16 8 10.1617 2.3759 1.4574 17 16 3.9345 -0.7099 0.0040 18 6 2.2251 -1.1390 0.0055 19 16 1.5697 -2.7746 0.0119 20 6 3.0666 -3.7041 0.0164 21 1 4.0187 -3.1943 0.0142 22 6 3.0222 -5.0876 0.0226 23 7 4.1420 -5.7829 0.0254 24 14 1.3753 -5.9692 0.0270 25 1 0.9386 -6.2091 -1.3720 26 1 1.5114 -7.2687 0.7327 27 1 0.3669 -5.1308 0.7235 28 1 -0.3633 0.0049 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3634 -0.8925 -0.5095 31 1 4.0798 2.9688 -0.0119 32 1 6.4848 4.5004 -1.5804 33 1 6.7939 2.8285 -2.2191 34 1 8.6921 4.6019 -0.5202 35 1 9.1417 3.3895 -1.7965 36 1 10.5577 2.5101 2.3293 37 1 4.1109 -6.7524 0.0293 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001574421182.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:39 Heat of formation + Delta-G solvation = -95.263415 kcal Electronic energy + Delta-G solvation = -24219.857051 eV Core-core repulsion = 20407.625746 eV Total energy + Delta-G solvation = -3812.231305 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.31068 -41.10257 -40.26273 -38.62656 -37.08799 -36.21410 -34.83404 -32.20416 -28.96869 -28.64738 -28.19114 -27.90609 -24.92919 -23.23233 -22.66512 -21.64520 -20.49305 -19.87442 -19.29833 -19.13723 -18.48998 -17.77380 -17.45600 -17.24832 -16.90667 -16.66430 -16.31626 -15.64161 -15.54733 -15.07640 -15.01169 -14.51368 -14.13834 -13.73149 -13.62693 -13.52274 -13.42460 -13.23714 -13.16626 -13.11751 -12.78197 -12.64000 -12.41214 -12.18211 -12.12974 -11.94089 -11.60465 -11.47407 -11.35258 -11.26691 -10.85908 -10.61323 -10.57876 -9.64045 -8.62656 -8.54730 -6.35841 -0.31845 0.13150 0.74416 1.04256 1.09407 1.11075 1.28270 1.38899 1.46964 1.63006 1.94948 2.11706 2.13391 2.49763 2.76301 3.00347 3.31529 3.44331 3.59455 3.74362 3.97466 4.35711 4.37611 4.50564 4.61167 4.65413 4.72272 4.84009 4.91797 4.93336 5.01436 5.02674 5.28367 5.42797 5.54477 5.59735 5.88487 6.06599 6.70015 6.75681 6.80199 6.92278 8.50093 Molecular weight = 342.05amu Principal moments of inertia in cm(-1) A = 0.015038 B = 0.003084 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1861.444009 B = 9076.981824 C =10402.328294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C 0.052 3.948 3 N -0.484 5.484 4 C 0.231 3.769 5 N -0.599 5.599 6 C 0.515 3.485 7 O -0.541 6.541 8 C -0.107 4.107 9 H 0.150 0.850 10 C -0.110 4.110 11 C -0.100 4.100 12 C -0.104 4.104 13 H 0.128 0.872 14 C 0.494 3.506 15 O -0.549 6.549 16 O -0.509 6.509 17 S 0.161 5.839 18 C -0.276 4.276 19 S 0.062 5.938 20 C -0.569 4.569 21 H 0.067 0.933 22 C 0.049 3.951 23 N -0.907 5.907 24 Si 0.914 3.086 25 H -0.251 1.251 26 H -0.254 1.254 27 H -0.219 1.219 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.438 0.562 32 H 0.123 0.877 33 H 0.091 0.909 34 H 0.110 0.890 35 H 0.107 0.893 36 H 0.427 0.573 37 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.311 22.365 -2.584 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.089 4.089 3 N -0.206 5.206 4 C -0.141 4.141 5 N -0.250 5.250 6 C 0.302 3.698 7 O -0.417 6.417 8 C -0.128 4.128 9 H 0.168 0.832 10 C -0.148 4.148 11 C -0.138 4.138 12 C -0.124 4.124 13 H 0.145 0.855 14 C 0.338 3.662 15 O -0.439 6.439 16 O -0.323 6.323 17 S 0.407 5.593 18 C -0.511 4.511 19 S 0.307 5.693 20 C -0.717 4.717 21 H 0.085 0.915 22 C -0.158 4.158 23 N -0.543 5.543 24 Si 0.733 3.267 25 H -0.175 1.175 26 H -0.178 1.178 27 H -0.143 1.143 28 H 0.100 0.900 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.280 0.720 32 H 0.141 0.859 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.125 0.875 36 H 0.289 0.711 37 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 5.029 20.890 -2.695 21.655 hybrid contribution 0.591 -0.246 0.975 1.166 sum 5.620 20.643 -1.720 21.464 Atomic orbital electron populations 1.20324 0.85027 1.03618 1.03466 1.19859 0.98705 0.83907 1.06418 1.66097 1.02507 1.31224 1.20773 1.24291 0.90412 0.93210 1.06168 1.42591 1.03942 1.08030 1.70477 1.21665 0.81917 0.91857 0.74331 1.90735 1.77485 1.24626 1.48838 1.22962 0.90016 0.95323 1.04484 0.83216 1.22938 0.96550 1.03401 0.91871 1.22865 0.97746 0.96146 0.97005 1.22632 0.93154 1.04933 0.91644 0.85451 1.23446 0.80194 0.72008 0.90600 1.90712 1.66571 1.44163 1.42495 1.84505 1.25577 1.79163 1.43025 1.86529 1.02263 0.97865 1.72614 1.28108 1.01460 1.04563 1.16967 1.81879 1.10766 0.89379 1.87317 1.22851 0.93265 0.95483 1.60072 0.91485 1.25721 1.01375 0.96824 0.91846 1.70116 1.29096 1.08267 1.46818 0.85897 0.79230 0.80485 0.81095 1.17531 1.17793 1.14266 0.89954 0.89188 0.90741 0.71999 0.85884 0.89077 0.87202 0.87480 0.71097 0.90855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.98 10.02 71.24 0.71 -1.27 16 2 C 0.05 2.06 6.73 41.77 0.28 2.35 16 3 N -0.48 -18.01 10.55 -184.86 -1.95 -19.96 16 4 C 0.23 8.57 8.40 179.15 1.50 10.08 16 5 N -0.60 -16.03 5.40 -309.57 -1.67 -17.70 16 6 C 0.51 13.94 7.32 87.66 0.64 14.58 16 7 O -0.54 -20.11 13.42 -3.06 -0.04 -20.15 16 8 C -0.11 -1.76 3.47 -11.01 -0.04 -1.79 16 9 H 0.15 2.06 7.46 -2.39 -0.02 2.05 16 10 C -0.11 -0.97 7.63 31.12 0.24 -0.74 16 11 C -0.10 -0.82 7.63 31.12 0.24 -0.58 16 12 C -0.10 -1.78 3.58 -11.01 -0.04 -1.82 16 13 H 0.13 2.64 7.43 -2.39 -0.02 2.62 16 14 C 0.49 9.93 7.85 71.24 0.56 10.49 16 15 O -0.55 -14.31 16.68 21.97 0.37 -13.94 16 16 O -0.51 -7.86 13.42 -51.37 -0.69 -8.55 16 17 S 0.16 7.48 18.35 -56.49 -1.04 6.44 16 18 C -0.28 -12.70 6.67 67.00 0.45 -12.25 16 19 S 0.06 2.99 18.70 -56.49 -1.06 1.93 16 20 C -0.57 -33.32 9.80 67.86 0.67 -32.66 16 21 H 0.07 4.33 6.21 -2.91 -0.02 4.31 16 22 C 0.05 2.82 5.49 84.74 0.47 3.28 16 23 N -0.91 -54.95 13.98 21.59 0.30 -54.65 16 24 Si 0.91 41.04 27.73 68.60 1.90 42.94 16 25 H -0.25 -10.81 7.11 99.48 0.71 -10.10 16 26 H -0.25 -10.81 7.11 99.48 0.71 -10.10 16 27 H -0.22 -9.19 6.73 99.48 0.67 -8.52 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.07 2.25 7.37 -2.39 -0.02 2.23 16 31 H 0.44 7.92 8.82 -92.71 -0.82 7.10 16 32 H 0.12 0.38 8.14 -2.39 -0.02 0.36 16 33 H 0.09 0.99 8.10 -2.38 -0.02 0.97 16 34 H 0.11 0.58 8.09 -2.38 -0.02 0.56 16 35 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.43 3.09 9.10 -74.06 -0.67 2.41 16 37 H 0.28 15.57 8.32 -92.70 -0.77 14.80 16 Total: -1.00 -81.57 347.25 1.43 -80.14 By element: Atomic # 1 Polarization: 14.20 SS G_CDS: -0.37 Total: 13.84 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: 5.68 Total: -10.34 kcal Atomic # 7 Polarization: -88.99 SS G_CDS: -3.32 Total: -92.31 kcal Atomic # 8 Polarization: -42.29 SS G_CDS: -0.36 Total: -42.65 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 1.90 Total: 42.94 kcal Atomic # 16 Polarization: 10.47 SS G_CDS: -2.09 Total: 8.38 kcal Total: -81.57 1.43 -80.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574421182.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.124 kcal (2) G-P(sol) polarization free energy of solvation -81.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.697 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds