Wall clock time and date at job start Wed Apr 1 2020 00:10:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31590 * 122.23052 * 2 1 4 4 C 1.29949 * 117.13625 * 179.97438 * 3 2 1 5 5 N 1.38884 * 125.36799 * 180.26504 * 4 3 2 6 6 C 1.34778 * 120.00744 * 179.71809 * 5 4 3 7 7 O 1.21290 * 119.99494 * 359.97438 * 6 5 4 8 8 C 1.50696 * 120.00472 * 179.97438 * 6 5 4 9 9 C 1.50696 * 115.55031 * 34.41695 * 8 6 5 10 10 O 1.20822 * 120.00279 * 145.58329 * 9 8 6 11 11 O 1.34230 * 120.00142 * 325.57961 * 9 8 6 12 12 C 1.53005 * 117.49983 * 248.74713 * 8 6 5 13 13 C 1.53004 * 117.49923 * 180.08444 * 8 6 5 14 14 H 1.09004 * 117.49845 * 0.02562 * 13 8 6 15 15 C 1.52994 * 117.50141 * 214.97841 * 13 8 6 16 16 S 1.76149 * 109.26915 * 359.97438 * 4 3 2 17 17 C 1.34653 * 122.22538 * 179.97438 * 2 1 3 18 18 S 1.76202 * 125.93653 * 0.02562 * 17 2 1 19 19 C 1.76192 * 100.00337 * 179.97438 * 18 17 2 20 20 H 1.08002 * 119.99879 * 0.02562 * 19 18 17 21 21 C 1.38427 * 120.00141 * 179.97438 * 19 18 17 22 22 N 1.31813 * 120.00025 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00139 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47190 * 90.00638 * 23 21 19 25 25 H 1.48502 * 109.47089 * 210.00473 * 23 21 19 26 26 H 1.48503 * 109.47122 * 330.00293 * 23 21 19 27 27 H 1.08993 * 109.47099 * 270.02484 * 1 2 3 28 28 H 1.09005 * 109.46576 * 30.02639 * 1 2 3 29 29 H 1.09001 * 109.47613 * 150.01992 * 1 2 3 30 30 H 0.97002 * 119.99621 * 359.71591 * 5 4 3 31 31 H 0.96701 * 117.00302 * 179.97438 * 11 9 8 32 32 H 1.08998 * 117.49816 * 359.97438 * 12 8 6 33 33 H 1.08998 * 117.49623 * 144.99940 * 12 8 6 34 34 H 1.09001 * 109.46926 * 59.99780 * 15 13 8 35 35 H 1.08997 * 109.47452 * 180.02562 * 15 13 8 36 36 H 1.09006 * 109.47363 * 300.00545 * 15 13 8 37 37 H 0.97001 * 120.00478 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2088 1.1131 0.0000 4 6 3.5032 0.9977 0.0005 5 7 4.4044 2.0544 0.0058 6 6 5.7298 1.8098 0.0116 7 8 6.1355 0.6668 0.0125 8 6 6.7077 2.9564 0.0168 9 6 6.2727 4.1782 0.7842 10 8 7.0904 4.8441 1.3739 11 8 4.9767 4.5267 0.8126 12 6 7.5461 3.1756 -1.2442 13 6 8.1988 2.6132 0.0211 14 1 8.4724 1.5581 0.0198 15 6 9.1340 3.5371 0.8038 16 16 3.9345 -0.7101 0.0018 17 6 2.2250 -1.1391 0.0005 18 16 1.5696 -2.7747 0.0006 19 6 3.0664 -3.7042 0.0006 20 1 4.0185 -3.1945 0.0009 21 6 3.0219 -5.0878 0.0012 22 7 1.8598 -5.7098 0.0013 23 14 4.6088 -6.0733 0.0004 24 1 5.0302 -6.3340 1.4003 25 1 4.3891 -7.3647 -0.6990 26 1 5.6685 -5.3046 -0.7006 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5143 29 1 -0.3634 -0.8901 -0.5135 30 1 4.0800 2.9686 0.0054 31 1 4.7459 5.3179 1.3184 32 1 7.3906 2.4903 -2.0774 33 1 7.7830 4.2036 -1.5186 34 1 8.8382 3.5495 1.8528 35 1 10.1582 3.1739 0.7190 36 1 9.0719 4.5464 0.3969 37 1 1.8286 -6.6794 0.0013 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001574421804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:24 Heat of formation + Delta-G solvation = -59.151819 kcal Electronic energy + Delta-G solvation = -24564.833093 eV Core-core repulsion = 20754.167704 eV Total energy + Delta-G solvation = -3810.665389 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 342.054 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.54198 -39.82814 -38.66318 -37.58928 -36.19724 -34.74336 -32.82960 -30.67720 -29.34202 -27.13689 -26.31989 -25.76948 -24.03379 -22.40246 -21.34999 -20.61576 -19.88700 -18.80048 -17.96784 -17.70920 -17.05364 -16.32784 -15.88810 -15.70360 -15.31732 -15.25900 -15.11155 -14.30912 -14.15863 -13.84770 -13.50604 -13.20535 -13.17467 -12.98594 -12.68385 -12.14591 -12.06666 -11.96820 -11.89261 -11.39618 -11.29612 -11.26653 -11.04134 -10.90223 -10.72881 -10.59151 -10.49138 -10.26869 -9.93986 -9.53760 -9.07732 -8.75669 -8.66822 -7.81754 -6.60849 -6.51025 -4.28534 1.27623 1.54880 1.85799 2.17646 2.43418 2.53922 2.78056 3.06919 3.09553 3.16736 3.16864 3.34196 3.62599 3.96582 3.98101 4.14665 4.31911 4.60276 4.81896 4.95450 5.02840 5.09854 5.23921 5.31057 5.42942 5.56854 5.74478 5.92250 5.97680 6.13106 6.16020 6.23305 6.44323 6.48391 6.96720 7.15661 7.32412 7.38188 7.91854 8.03483 8.51731 8.87718 10.44920 Molecular weight = 342.05amu Principal moments of inertia in cm(-1) A = 0.014528 B = 0.003411 C = 0.002833 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1926.902764 B = 8206.531748 C = 9880.796487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 N -0.471 5.471 4 C 0.186 3.814 5 N -0.601 5.601 6 C 0.545 3.455 7 O -0.496 6.496 8 C -0.176 4.176 9 C 0.522 3.478 10 O -0.494 6.494 11 O -0.514 6.514 12 C -0.117 4.117 13 C -0.076 4.076 14 H 0.137 0.863 15 C -0.118 4.118 16 S 0.197 5.803 17 C -0.249 4.249 18 S 0.151 5.849 19 C -0.557 4.557 20 H 0.089 0.911 21 C 0.082 3.918 22 N -0.863 5.863 23 Si 0.924 3.076 24 H -0.271 1.271 25 H -0.277 1.277 26 H -0.265 1.265 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.422 0.578 31 H 0.421 0.579 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.066 0.934 37 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.467 18.491 -0.917 20.358 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.124 4.124 3 N -0.193 5.193 4 C -0.185 4.185 5 N -0.254 5.254 6 C 0.329 3.671 7 O -0.371 6.371 8 C -0.181 4.181 9 C 0.364 3.636 10 O -0.381 6.381 11 O -0.329 6.329 12 C -0.155 4.155 13 C -0.095 4.095 14 H 0.155 0.845 15 C -0.175 4.175 16 S 0.441 5.559 17 C -0.486 4.486 18 S 0.402 5.598 19 C -0.705 4.705 20 H 0.107 0.893 21 C -0.129 4.129 22 N -0.496 5.496 23 Si 0.749 3.251 24 H -0.196 1.196 25 H -0.203 1.203 26 H -0.189 1.189 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.265 0.735 31 H 0.282 0.718 32 H 0.139 0.861 33 H 0.134 0.866 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.541 16.736 -0.964 18.814 hybrid contribution 0.733 0.948 0.413 1.267 sum 9.274 17.683 -0.551 19.976 Atomic orbital electron populations 1.20119 0.87999 1.02141 1.01813 1.19049 0.96730 0.84548 1.12026 1.65797 1.02791 1.32353 1.18312 1.23755 0.89898 0.92678 1.12149 1.42468 1.03847 1.09024 1.70028 1.19021 0.81590 0.89019 0.77503 1.90731 1.77109 1.21104 1.48107 1.21044 0.96017 0.93142 1.07914 1.21701 0.80039 0.83969 0.77891 1.90752 1.52978 1.52648 1.41678 1.84260 1.28063 1.49889 1.70644 1.23424 0.97228 1.04347 0.90462 1.22762 0.86087 1.03034 0.97596 0.84534 1.21510 0.97328 0.98048 1.00638 1.85791 1.01971 0.95544 1.72632 1.28763 1.01124 1.06761 1.11949 1.83072 1.10998 0.84352 1.81407 1.23270 0.93602 0.94055 1.59620 0.89312 1.25026 0.98276 0.96663 0.92900 1.70013 1.24409 1.10341 1.44835 0.86032 0.81249 0.78775 0.79033 1.19609 1.20266 1.18879 0.91860 0.91894 0.91027 0.73489 0.71765 0.86084 0.86560 0.90930 0.91715 0.91518 0.91296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.07 10.02 36.01 0.36 -0.71 16 2 C 0.02 0.40 6.73 -83.97 -0.57 -0.16 16 3 N -0.47 -9.52 10.55 -9.78 -0.10 -9.62 16 4 C 0.19 3.62 8.40 -87.20 -0.73 2.89 16 5 N -0.60 -9.24 5.21 -11.78 -0.06 -9.31 16 6 C 0.55 7.99 7.34 -10.99 -0.08 7.91 16 7 O -0.50 -8.86 13.78 5.55 0.08 -8.78 16 8 C -0.18 -1.87 2.56 -156.81 -0.40 -2.27 16 9 C 0.52 5.06 7.84 36.00 0.28 5.34 16 10 O -0.49 -5.39 13.87 -18.75 -0.26 -5.65 16 11 O -0.51 -3.80 10.51 -39.26 -0.41 -4.21 16 12 C -0.12 -0.91 9.59 -26.69 -0.26 -1.17 16 13 C -0.08 -0.70 5.92 -90.58 -0.54 -1.24 16 14 H 0.14 1.35 7.67 -51.93 -0.40 0.95 16 15 C -0.12 -0.98 8.43 37.15 0.31 -0.66 16 16 S 0.20 4.33 18.35 -107.50 -1.97 2.36 16 17 C -0.25 -5.74 6.67 29.46 0.20 -5.54 16 18 S 0.15 3.78 20.74 -107.50 -2.23 1.55 16 19 C -0.56 -15.11 9.26 30.80 0.29 -14.82 16 20 H 0.09 2.39 5.97 -52.49 -0.31 2.08 16 21 C 0.08 2.19 5.49 -17.49 -0.10 2.10 16 22 N -0.86 -23.69 13.22 55.47 0.73 -22.96 16 23 Si 0.92 20.58 29.55 -169.99 -5.02 15.56 16 24 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 25 H -0.28 -5.98 7.11 56.52 0.40 -5.57 16 26 H -0.26 -5.86 7.11 56.52 0.40 -5.46 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.07 1.24 7.37 -51.93 -0.38 0.86 16 30 H 0.42 5.44 5.98 -40.82 -0.24 5.20 16 31 H 0.42 1.16 9.10 45.56 0.41 1.58 16 32 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.12 0.68 8.05 -51.93 -0.42 0.26 16 34 H 0.07 0.70 7.26 -51.93 -0.38 0.33 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.07 0.54 7.02 -51.93 -0.36 0.18 16 37 H 0.28 7.05 8.32 -40.82 -0.34 6.72 16 LS Contribution 344.69 15.07 5.19 5.19 Total: -1.00 -32.79 344.69 -8.20 -40.99 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -2.91 Total: 3.23 kcal Atomic # 6 Polarization: -7.11 SS G_CDS: -1.23 Total: -8.34 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.57 Total: -41.89 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.60 Total: -18.65 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.56 kcal Atomic # 16 Polarization: 8.11 SS G_CDS: -4.20 Total: 3.91 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.79 -8.20 -40.99 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001574421804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.164 kcal (2) G-P(sol) polarization free energy of solvation -32.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.988 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds