Wall clock time and date at job start Wed Apr 1 2020 01:17:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 O 1.42101 * 110.54481 * 2 1 4 4 O 1.42093 * 110.54489 * 136.75463 * 2 1 3 5 5 N 1.65602 * 104.45109 * 248.37857 * 2 1 3 6 6 C 1.39016 * 120.00011 * 63.29125 * 5 2 1 7 7 C 1.39237 * 119.92319 * 253.95305 * 6 5 2 8 8 C 1.37111 * 120.07014 * 179.75790 * 7 6 5 9 9 C 1.39862 * 119.92302 * 0.51992 * 8 7 6 10 10 C 1.47386 * 120.07165 * 179.71496 * 9 8 7 11 11 O 1.21514 * 119.99903 * 180.02562 * 10 9 8 12 12 O 1.34763 * 119.99746 * 0.02562 * 10 9 8 13 13 C 1.45202 * 116.99537 * 179.97438 * 12 10 9 14 14 C 1.50702 * 109.47003 * 179.97438 * 13 12 10 15 15 O 1.21290 * 119.99758 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99992 * 180.02562 * 14 13 12 17 17 C 1.37090 * 119.99694 * 180.02562 * 16 14 13 18 18 H 1.08000 * 120.00874 * 0.02562 * 17 16 14 19 19 C 1.38959 * 119.99784 * 180.02562 * 17 16 14 20 20 N 1.31414 * 119.99721 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00040 * 180.02562 * 19 17 16 22 22 H 1.48503 * 109.47082 * 359.97438 * 21 19 17 23 23 H 1.48491 * 109.47144 * 119.99952 * 21 19 17 24 24 H 1.48501 * 109.47174 * 240.00281 * 21 19 17 25 25 C 1.39852 * 119.85635 * 359.73514 * 9 8 7 26 26 C 1.37112 * 119.92371 * 0.02562 * 25 9 8 27 27 H 1.09004 * 109.47074 * 166.11455 * 1 2 3 28 28 H 1.08998 * 109.47245 * 286.11363 * 1 2 3 29 29 H 1.09003 * 109.46849 * 46.11529 * 1 2 3 30 30 H 0.97004 * 120.00248 * 243.29486 * 5 2 1 31 31 H 1.07994 * 119.96891 * 0.02562 * 7 6 5 32 32 H 1.08000 * 120.04094 * 180.23109 * 8 7 6 33 33 H 1.08994 * 109.47292 * 300.00295 * 13 12 10 34 34 H 1.09002 * 109.47146 * 60.00188 * 13 12 10 35 35 H 0.97003 * 119.99764 * 0.02562 * 16 14 13 36 36 H 0.96997 * 119.99197 * 179.97438 * 20 19 17 37 37 H 1.08001 * 120.04094 * 179.97438 * 25 9 8 38 38 H 1.08001 * 119.96535 * 179.97438 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3127 1.3306 0.0000 4 8 2.3127 -0.9692 0.9116 5 7 2.2273 -0.5909 -1.4908 6 6 1.8767 0.1111 -2.6383 7 6 0.8431 -0.3527 -3.4477 8 6 0.4916 0.3400 -4.5776 9 6 1.1798 1.5077 -4.9224 10 6 0.8088 2.2515 -6.1396 11 8 1.4080 3.2656 -6.4382 12 8 -0.1949 1.8068 -6.9213 13 6 -0.5059 2.5900 -8.1037 14 6 -1.6456 1.9440 -8.8486 15 8 -2.1468 0.9242 -8.4243 16 7 -2.1080 2.4995 -9.9862 17 6 -3.1452 1.9121 -10.6635 18 1 -3.5921 1.0045 -10.2853 19 6 -3.6216 2.4845 -11.8367 20 7 -3.0776 3.5886 -12.2971 21 14 -5.0353 1.6846 -12.7591 22 1 -5.4670 0.4602 -12.0382 23 1 -6.1721 2.6361 -12.8444 24 1 -4.5902 1.3211 -14.1284 25 6 2.2211 1.9679 -4.1101 26 6 2.5643 1.2731 -2.9789 27 1 -0.3633 -0.9977 -0.2466 28 1 -0.3633 0.2852 0.9873 29 1 -0.3633 0.7124 -0.7407 30 1 2.7139 -1.4269 -1.5634 31 1 0.3147 -1.2566 -3.1831 32 1 -0.3128 -0.0181 -5.2030 33 1 -0.7911 3.5991 -7.8065 34 1 0.3706 2.6357 -8.7502 35 1 -1.7070 3.3149 -10.3257 36 1 -3.4099 3.9879 -13.1162 37 1 2.7548 2.8690 -4.3738 38 1 3.3685 1.6275 -2.3513 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731237346.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:17:45 Heat of formation + Delta-G solvation = -156.638480 kcal Electronic energy + Delta-G solvation = -26076.297543 eV Core-core repulsion = 21818.651944 eV Total energy + Delta-G solvation = -4257.645598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 342.081 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.67230 -39.50299 -38.14302 -37.57606 -36.47945 -36.19314 -35.41264 -34.04058 -31.55657 -31.41612 -30.21224 -29.97355 -28.23777 -24.88841 -23.87121 -23.04736 -21.09066 -20.09582 -19.62619 -18.50583 -18.19795 -18.10307 -17.98143 -16.84972 -16.67464 -16.35989 -15.88122 -15.70635 -15.34006 -14.85080 -14.54005 -14.18382 -14.03864 -13.94383 -13.83071 -13.69854 -13.55976 -13.15775 -12.82758 -12.61660 -12.52682 -12.40324 -12.24003 -12.08695 -11.87370 -11.65754 -11.49774 -11.18298 -10.60632 -10.48054 -10.47385 -10.42128 -10.33218 -9.65274 -9.45311 -9.19518 -8.57031 -8.12090 -6.53516 -3.95559 -0.38376 0.31967 1.01008 2.07985 2.35690 2.59816 3.08990 3.21520 3.23693 3.28592 3.41137 3.69040 3.69789 4.07518 4.22959 4.40613 4.48156 4.53298 4.57546 4.70124 4.93990 4.94376 5.11630 5.14515 5.18746 5.41811 5.51312 5.65405 5.68292 5.81776 5.93380 5.99556 6.07226 6.25163 6.50605 6.57233 7.44625 7.74767 7.91498 8.44387 9.03493 9.35547 9.84936 10.63695 Molecular weight = 342.08amu Principal moments of inertia in cm(-1) A = 0.027843 B = 0.001867 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1005.388802 B =14991.917216 C =15655.877277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.669 4.669 2 S 2.608 3.392 3 O -0.946 6.946 4 O -0.955 6.955 5 N -1.066 6.066 6 C 0.147 3.853 7 C -0.132 4.132 8 C -0.051 4.051 9 C -0.111 4.111 10 C 0.502 3.498 11 O -0.507 6.507 12 O -0.321 6.321 13 C 0.061 3.939 14 C 0.438 3.562 15 O -0.577 6.577 16 N -0.552 5.552 17 C -0.302 4.302 18 H 0.107 0.893 19 C 0.024 3.976 20 N -0.896 5.896 21 Si 0.934 3.066 22 H -0.267 1.267 23 H -0.280 1.280 24 H -0.280 1.280 25 C -0.046 4.046 26 C -0.117 4.117 27 H 0.132 0.868 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.427 0.573 31 H 0.139 0.861 32 H 0.153 0.847 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.395 0.605 36 H 0.274 0.726 37 H 0.146 0.854 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.771 -6.013 21.566 24.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.820 4.820 2 S 2.702 3.298 3 O -0.936 6.936 4 O -0.945 6.945 5 N -0.821 5.821 6 C 0.052 3.948 7 C -0.153 4.153 8 C -0.070 4.070 9 C -0.112 4.112 10 C 0.347 3.653 11 O -0.397 6.397 12 O -0.235 6.235 13 C -0.016 4.016 14 C 0.223 3.777 15 O -0.461 6.461 16 N -0.189 5.189 17 C -0.431 4.431 18 H 0.125 0.875 19 C -0.178 4.178 20 N -0.536 5.536 21 Si 0.761 3.239 22 H -0.191 1.191 23 H -0.206 1.206 24 H -0.206 1.206 25 C -0.065 4.065 26 C -0.138 4.138 27 H 0.151 0.849 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.266 0.734 31 H 0.157 0.843 32 H 0.171 0.829 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.229 0.771 36 H 0.084 0.916 37 H 0.164 0.836 38 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 10.051 -5.886 22.300 25.159 hybrid contribution -0.844 -0.144 -1.248 1.514 sum 9.208 -6.030 21.052 23.756 Atomic orbital electron populations 1.30479 1.27277 1.12207 1.12025 1.05103 0.77904 0.74432 0.72384 1.93643 1.77054 1.37857 1.85051 1.93638 1.78214 1.61715 1.60941 1.53134 1.71512 1.36688 1.20730 1.17531 0.95356 0.93295 0.88587 1.21330 0.97375 1.01193 0.95373 1.21480 0.97861 0.92211 0.95408 1.19337 0.99815 0.97412 0.94678 1.21107 0.77874 0.83005 0.83337 1.90844 1.52169 1.24605 1.72098 1.86587 1.48839 1.52665 1.35402 1.22789 0.99416 0.94743 0.84670 1.19292 0.86700 0.87680 0.84017 1.90552 1.61289 1.25712 1.68580 1.41713 1.31547 1.25365 1.20293 1.19769 1.09514 1.09475 1.04367 0.87541 1.25331 0.99226 0.96089 0.97185 1.69623 1.42054 1.19086 1.22881 0.85734 0.80057 0.79153 0.79000 1.19096 1.20614 1.20618 1.21127 0.94106 0.99159 0.92126 1.21401 1.00114 0.95363 0.96909 0.84914 0.84954 0.84890 0.73395 0.84309 0.82931 0.89356 0.89364 0.77124 0.91643 0.83623 0.83658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.42 10.79 101.05 1.09 -1.33 16 2 S 2.61 16.44 6.07 -107.50 -0.65 15.79 16 3 O -0.95 -9.33 16.83 -57.54 -0.97 -10.30 16 4 O -0.95 -8.84 18.08 -57.54 -1.04 -9.88 16 5 N -1.07 -5.76 5.56 32.41 0.18 -5.58 16 6 C 0.15 1.09 5.69 -83.86 -0.48 0.61 16 7 C -0.13 -0.97 9.93 -39.62 -0.39 -1.36 16 8 C -0.05 -0.51 9.58 -39.38 -0.38 -0.89 16 9 C -0.11 -1.32 5.88 -104.96 -0.62 -1.94 16 10 C 0.50 7.71 7.89 34.45 0.27 7.98 16 11 O -0.51 -8.60 16.13 -19.28 -0.31 -8.91 16 12 O -0.32 -5.65 8.99 -47.35 -0.43 -6.07 16 13 C 0.06 1.12 5.95 36.01 0.21 1.34 16 14 C 0.44 10.21 7.86 -10.98 -0.09 10.12 16 15 O -0.58 -15.41 16.08 -14.11 -0.23 -15.63 16 16 N -0.55 -13.61 5.29 -10.96 -0.06 -13.66 16 17 C -0.30 -8.15 9.68 -14.93 -0.14 -8.30 16 18 H 0.11 3.00 7.16 -52.49 -0.38 2.63 16 19 C 0.02 0.63 5.50 -17.46 -0.10 0.53 16 20 N -0.90 -23.65 13.05 55.50 0.72 -22.93 16 21 Si 0.93 20.32 29.55 -169.99 -5.02 15.30 16 22 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 23 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 24 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 25 C -0.05 -0.47 9.56 -39.39 -0.38 -0.85 16 26 C -0.12 -1.02 9.16 -39.62 -0.36 -1.38 16 27 H 0.13 0.27 8.14 -51.92 -0.42 -0.16 16 28 H 0.13 0.32 8.14 -51.93 -0.42 -0.11 16 29 H 0.13 0.48 8.14 -51.92 -0.42 0.05 16 30 H 0.43 1.49 8.91 -34.48 -0.31 1.19 16 31 H 0.14 0.65 8.06 -52.49 -0.42 0.23 16 32 H 0.15 1.63 7.60 -52.49 -0.40 1.23 16 33 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 34 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 35 H 0.40 9.24 7.90 -40.82 -0.32 8.92 16 36 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 37 H 0.15 1.41 7.64 -52.49 -0.40 1.01 16 38 H 0.15 1.16 7.72 -52.49 -0.41 0.76 16 LS Contribution 358.42 15.07 5.40 5.40 Total: -1.00 -36.62 358.42 -7.64 -44.26 By element: Atomic # 1 Polarization: 11.58 SS G_CDS: -3.88 Total: 7.70 kcal Atomic # 6 Polarization: 5.89 SS G_CDS: -1.35 Total: 4.53 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 0.85 Total: -42.18 kcal Atomic # 8 Polarization: -47.83 SS G_CDS: -2.97 Total: -50.80 kcal Atomic # 14 Polarization: 20.32 SS G_CDS: -5.02 Total: 15.30 kcal Atomic # 16 Polarization: 16.44 SS G_CDS: -0.65 Total: 15.79 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -36.62 -7.64 -44.26 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731237346.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -112.379 kcal (2) G-P(sol) polarization free energy of solvation -36.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds