Wall clock time and date at job start Wed Apr 1 2020 00:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86797 * 120.00282 * 2 1 4 4 H 1.48500 * 109.47357 * 274.45131 * 3 2 1 5 5 H 1.48499 * 109.46863 * 34.44814 * 3 2 1 6 6 H 1.48495 * 109.47290 * 154.44824 * 3 2 1 7 7 C 1.38813 * 119.99755 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99782 * 189.00377 * 7 2 1 9 9 N 1.36937 * 119.99988 * 9.00826 * 7 2 1 10 10 C 1.48140 * 127.84016 * 15.54539 * 9 7 2 11 11 C 1.57692 * 104.67176 * 139.77815 * 10 9 7 12 12 H 1.09001 * 120.32621 * 244.63530 * 11 10 9 13 13 C 1.54285 * 103.39215 * 24.73441 * 11 10 9 14 14 H 1.09000 * 121.81706 * 220.68005 * 13 11 10 15 15 C 1.48148 * 127.83553 * 195.55172 * 9 7 2 16 16 C 1.52998 * 59.72598 * 112.63724 * 13 11 10 17 17 H 1.08995 * 117.44111 * 252.35336 * 16 13 11 18 18 N 1.46500 * 117.44193 * 107.60425 * 16 13 11 19 19 C 1.34777 * 119.99405 * 154.83204 * 18 16 13 20 20 O 1.21574 * 120.00496 * 0.02562 * 19 18 16 21 21 C 1.47625 * 119.99680 * 180.02562 * 19 18 16 22 22 C 1.39882 * 120.16327 * 89.72077 * 21 19 18 23 23 F 1.35093 * 120.08264 * 0.02562 * 22 21 19 24 24 C 1.38227 * 119.84001 * 179.76901 * 22 21 19 25 25 C 1.38286 * 120.17882 * 0.51064 * 24 22 21 26 26 C 1.38522 * 120.33778 * 359.74800 * 25 24 22 27 27 F 1.35102 * 119.92380 * 179.97438 * 26 25 24 28 28 C 1.38283 * 120.15694 * 359.97438 * 26 25 24 29 29 Cl 1.73599 * 120.09375 * 180.02562 * 28 26 25 30 30 H 0.97002 * 119.99856 * 359.97438 * 1 2 3 31 31 H 1.09001 * 110.40998 * 259.20275 * 10 9 7 32 32 H 1.08997 * 110.40979 * 21.63644 * 10 9 7 33 33 H 1.09000 * 110.40747 * 100.79594 * 15 9 7 34 34 H 1.09006 * 110.50956 * 338.41966 * 15 9 7 35 35 H 0.96992 * 120.00079 * 334.83931 * 18 16 13 36 36 H 1.08002 * 119.90930 * 180.25675 * 24 22 21 37 37 H 1.08000 * 119.83314 * 179.71966 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4038 2.1007 -1.3958 5 1 1.4979 2.6236 0.7920 6 1 3.5917 1.4148 0.6039 7 6 2.0103 -1.2022 -0.0005 8 1 3.0803 -1.2080 0.1458 9 7 1.3382 -2.3807 -0.1868 10 6 -0.0354 -2.5710 -0.7080 11 6 0.0653 -3.8335 -1.6474 12 1 -0.1123 -3.7380 -2.7186 13 6 1.2843 -4.5975 -1.0899 14 1 2.0149 -5.0709 -1.7458 15 6 1.8198 -3.7546 0.0875 16 6 -0.1200 -5.1931 -0.9705 17 1 -0.5787 -5.2036 0.0182 18 7 -0.4441 -6.3352 -1.8288 19 6 -1.4028 -7.2067 -1.4572 20 8 -1.9987 -7.0448 -0.4100 21 6 -1.7291 -8.3578 -2.3219 22 6 -1.0513 -9.5710 -2.1625 23 9 -0.0954 -9.6934 -1.2157 24 6 -1.3655 -10.6461 -2.9726 25 6 -2.3399 -10.5216 -3.9459 26 6 -3.0120 -9.3221 -4.1138 27 9 -3.9621 -9.2096 -5.0676 28 6 -2.7128 -8.2394 -3.3073 29 17 -3.5566 -6.7370 -3.5186 30 1 -0.4850 0.8401 0.0004 31 1 -0.7315 -2.7500 0.1115 32 1 -0.3455 -1.7020 -1.2882 33 1 1.4135 -4.1185 1.0312 34 1 2.9093 -3.7802 0.1087 35 1 0.0311 -6.4642 -2.6644 36 1 -0.8458 -11.5845 -2.8477 37 1 -2.5778 -11.3638 -4.5787 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961854607.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:55 Heat of formation + Delta-G solvation = -33.676912 kcal Electronic energy + Delta-G solvation = -26466.159704 eV Core-core repulsion = 22100.714897 eV Total energy + Delta-G solvation = -4365.444807 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.069 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -49.52584 -49.51436 -40.39109 -39.06233 -38.04834 -37.04389 -34.56943 -32.88049 -31.86733 -30.69440 -30.15233 -27.02555 -25.94288 -24.87717 -23.50851 -22.06350 -20.85292 -20.41586 -19.33618 -18.66874 -18.13544 -18.06789 -16.92288 -16.90032 -16.59003 -16.25744 -15.89396 -15.44624 -15.00686 -14.78233 -14.67511 -14.45312 -13.81699 -13.65027 -13.34257 -13.29119 -13.24091 -12.76416 -12.30745 -12.28608 -11.90036 -11.60047 -11.51107 -11.50069 -11.01499 -10.85113 -10.43596 -10.26086 -10.24534 -10.11207 -9.76571 -9.71764 -9.23907 -9.19920 -8.77227 -8.42615 -6.89320 -5.81186 -3.16063 0.03155 0.15212 1.37438 2.21553 2.45213 2.78599 3.37529 3.42858 3.43560 3.45307 3.48010 3.88742 4.14452 4.21946 4.29582 4.45499 4.58120 4.98171 5.04096 5.10110 5.17205 5.27172 5.34841 5.36250 5.53667 5.77634 5.85490 5.88844 5.99052 6.11952 6.46989 6.65919 6.69970 6.84648 7.31376 7.35286 7.51996 7.70172 7.97848 8.18617 9.09078 9.71652 10.48311 11.32952 Molecular weight = 342.07amu Principal moments of inertia in cm(-1) A = 0.021296 B = 0.002565 C = 0.002375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.455612 B =10912.621724 C =11786.160985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C -0.005 4.005 3 Si 0.914 3.086 4 H -0.288 1.288 5 H -0.290 1.290 6 H -0.279 1.279 7 C -0.228 4.228 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.188 3.812 11 C -0.180 4.180 12 H 0.107 0.893 13 C -0.181 4.181 14 H 0.103 0.897 15 C 0.156 3.844 16 C 0.091 3.909 17 H 0.135 0.865 18 N -0.681 5.681 19 C 0.566 3.434 20 O -0.508 6.508 21 C -0.124 4.124 22 C 0.138 3.862 23 F -0.115 7.115 24 C -0.121 4.121 25 C -0.098 4.098 26 C 0.101 3.899 27 F -0.117 7.117 28 C -0.023 4.023 29 Cl -0.011 7.011 30 H 0.255 0.745 31 H 0.031 0.969 32 H 0.090 0.910 33 H 0.028 0.972 34 H 0.053 0.947 35 H 0.401 0.599 36 H 0.161 0.839 37 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.320 -24.097 -11.122 26.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.202 4.202 3 Si 0.744 3.256 4 H -0.215 1.215 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.356 4.356 8 H 0.095 0.905 9 N -0.315 5.315 10 C 0.062 3.938 11 C -0.201 4.201 12 H 0.125 0.875 13 C -0.202 4.202 14 H 0.121 0.879 15 C 0.029 3.971 16 C -0.014 4.014 17 H 0.152 0.848 18 N -0.328 5.328 19 C 0.349 3.651 20 O -0.382 6.382 21 C -0.129 4.129 22 C 0.117 3.883 23 F -0.093 7.093 24 C -0.140 4.140 25 C -0.117 4.117 26 C 0.080 3.920 27 F -0.096 7.096 28 C -0.052 4.052 29 Cl 0.019 6.981 30 H 0.065 0.935 31 H 0.048 0.952 32 H 0.109 0.891 33 H 0.046 0.954 34 H 0.071 0.929 35 H 0.235 0.765 36 H 0.178 0.822 37 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -4.839 -23.522 -10.310 26.134 hybrid contribution 0.579 0.782 -0.640 1.165 sum -4.260 -22.740 -10.951 25.597 Atomic orbital electron populations 1.69898 1.05055 1.25494 1.55545 1.24917 0.95659 0.98034 1.01625 0.86076 0.78724 0.83254 0.77538 1.21537 1.21641 1.20477 1.19007 0.90823 0.82224 1.43574 0.90454 1.45124 1.13375 0.99989 1.73043 1.21660 0.86785 0.92213 0.93183 1.25488 1.01513 0.92965 1.00140 0.87528 1.24287 0.90108 1.02383 1.03399 0.87904 1.21133 0.97246 0.85835 0.92887 1.21983 0.99209 0.84254 0.95948 0.84782 1.45317 1.37452 1.25772 1.24294 1.17569 0.80526 0.81571 0.85413 1.90871 1.50456 1.73792 1.23093 1.19780 0.98803 0.95820 0.98520 1.17441 0.88692 0.92915 0.89237 1.91616 1.60194 1.96123 1.61370 1.21078 0.98823 0.98945 0.95118 1.21116 0.95306 0.96466 0.98821 1.17195 0.91370 0.93513 0.89915 1.91594 1.60950 1.96390 1.60624 1.20759 0.97265 0.90096 0.97087 1.98474 1.75308 1.28164 1.96155 0.93481 0.95157 0.89149 0.95409 0.92887 0.76522 0.82184 0.82122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.74 10.86 55.49 0.60 -26.14 16 2 C -0.01 -0.14 5.40 -17.43 -0.09 -0.23 16 3 Si 0.91 21.85 29.56 -169.99 -5.03 16.83 16 4 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 5 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.23 -6.31 10.35 -15.06 -0.16 -6.47 16 8 H 0.08 2.06 7.84 -52.48 -0.41 1.65 16 9 N -0.59 -15.08 3.38 -166.73 -0.56 -15.64 16 10 C 0.19 4.52 5.76 -0.57 0.00 4.52 16 11 C -0.18 -3.37 7.34 -87.38 -0.64 -4.01 16 12 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 13 C -0.18 -3.14 6.98 -89.22 -0.62 -3.76 16 14 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 15 C 0.16 3.24 7.04 -2.41 -0.02 3.22 16 16 C 0.09 1.53 5.92 -67.93 -0.40 1.13 16 17 H 0.13 2.56 7.40 -51.93 -0.38 2.18 16 18 N -0.68 -9.38 5.56 -54.82 -0.30 -9.69 16 19 C 0.57 8.36 5.95 -12.43 -0.07 8.28 16 20 O -0.51 -9.49 16.67 5.30 0.09 -9.41 16 21 C -0.12 -1.42 5.64 -104.89 -0.59 -2.01 16 22 C 0.14 1.28 7.29 -38.97 -0.28 1.00 16 23 F -0.11 -1.24 16.83 2.25 0.04 -1.20 16 24 C -0.12 -0.69 10.01 -39.57 -0.40 -1.08 16 25 C -0.10 -0.52 10.01 -39.46 -0.39 -0.92 16 26 C 0.10 0.83 7.26 -39.46 -0.29 0.55 16 27 F -0.12 -1.04 16.83 2.25 0.04 -1.00 16 28 C -0.02 -0.25 6.36 -39.00 -0.25 -0.49 16 29 Cl -0.01 -0.13 27.70 -51.86 -1.44 -1.56 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 32 H 0.09 2.42 6.51 -51.93 -0.34 2.08 16 33 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 35 H 0.40 4.40 8.81 -40.82 -0.36 4.04 16 36 H 0.16 0.43 8.06 -52.49 -0.42 0.00 16 37 H 0.16 0.34 8.06 -52.49 -0.42 -0.08 16 LS Contribution 345.71 15.07 5.21 5.21 Total: -1.00 -32.44 345.71 -9.15 -41.59 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -3.59 Total: 1.29 kcal Atomic # 6 Polarization: 3.93 SS G_CDS: -4.21 Total: -0.28 kcal Atomic # 7 Polarization: -51.20 SS G_CDS: -0.27 Total: -51.47 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.09 Total: -9.41 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.08 Total: -2.20 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.03 Total: 16.83 kcal Atomic # 17 Polarization: -0.13 SS G_CDS: -1.44 Total: -1.56 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.44 -9.15 -41.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961854607.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.915 kcal (2) G-P(sol) polarization free energy of solvation -32.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds