Wall clock time and date at job start Wed Apr 1 2020 00:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31294 * 1 3 3 Si 1.86803 * 120.00005 * 2 1 4 4 H 1.48498 * 109.47174 * 270.00222 * 3 2 1 5 5 H 1.48501 * 109.47062 * 30.00173 * 3 2 1 6 6 H 1.48504 * 109.46913 * 149.99972 * 3 2 1 7 7 C 1.38992 * 120.00157 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99846 * 179.97438 * 7 2 1 9 9 N 1.37312 * 119.99460 * 0.27649 * 7 2 1 10 10 C 1.36490 * 126.06289 * 179.72506 * 9 7 2 11 11 C 1.35709 * 107.50801 * 180.02562 * 10 9 7 12 12 N 1.40494 * 126.09097 * 179.97438 * 11 10 9 13 13 C 1.34771 * 120.00095 * 179.97438 * 12 11 10 14 14 O 1.21527 * 119.99984 * 0.02562 * 13 12 11 15 15 C 1.48309 * 119.99879 * 180.02562 * 13 12 11 16 16 C 1.41910 * 126.84186 * 180.02562 * 15 13 12 17 17 C 1.36737 * 103.81471 * 179.97438 * 16 15 13 18 18 C 1.47818 * 126.81698 * 179.97438 * 17 16 15 19 19 C 1.39587 * 120.11758 * 359.71895 * 18 17 16 20 20 C 1.37905 * 119.87698 * 179.76991 * 19 18 17 21 21 C 1.38595 * 120.11841 * 0.51300 * 20 19 18 22 22 F 1.35105 * 119.88091 * 179.72270 * 21 20 19 23 23 C 1.38597 * 120.23871 * 359.73777 * 21 20 19 24 24 C 1.37892 * 120.11955 * 0.02562 * 23 21 20 25 25 O 1.34470 * 106.36618 * 359.97438 * 17 16 15 26 26 N 1.20874 * 111.73652 * 359.74875 * 25 17 16 27 27 C 1.40677 * 107.82247 * 359.97438 * 11 10 9 28 28 N 1.30901 * 108.38575 * 359.72228 * 27 11 10 29 29 H 0.97005 * 119.99961 * 359.97438 * 1 2 3 30 30 H 1.08003 * 126.24724 * 359.95965 * 10 9 7 31 31 H 0.97006 * 119.99481 * 359.97438 * 12 11 10 32 32 H 1.08002 * 128.09571 * 359.93931 * 16 15 13 33 33 H 1.07996 * 120.06286 * 0.02562 * 19 18 17 34 34 H 1.08005 * 119.93632 * 180.22646 * 20 19 18 35 35 H 1.08001 * 119.93947 * 179.97438 * 23 21 20 36 36 H 1.07996 * 120.06204 * 180.02562 * 24 23 21 37 37 H 1.08000 * 125.80698 * 179.97438 * 27 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3129 0.0000 0.0000 3 14 2.2470 1.6178 0.0000 4 1 2.4944 2.0465 -1.4001 5 1 1.4444 2.6527 0.7001 6 1 3.5445 1.4401 0.7001 7 6 2.0079 -1.2037 -0.0005 8 1 3.0880 -1.2036 -0.0010 9 7 1.3213 -2.3928 -0.0068 10 6 1.8750 -3.6403 -0.0134 11 6 0.8577 -4.5385 -0.0187 12 7 0.9887 -5.9373 -0.0267 13 6 -0.1105 -6.7170 -0.0309 14 8 -1.2150 -6.2102 -0.0281 15 6 0.0279 -8.1937 -0.0388 16 6 -1.0235 -9.1468 -0.0444 17 6 -0.3735 -10.3498 -0.0512 18 6 -0.9936 -11.6916 -0.0585 19 6 -2.3835 -11.8209 -0.0528 20 6 -2.9567 -13.0751 -0.0644 21 6 -2.1555 -14.2060 -0.0709 22 9 -2.7222 -15.4324 -0.0766 23 6 -0.7750 -14.0833 -0.0713 24 6 -0.1913 -12.8340 -0.0646 25 8 0.9417 -10.0699 -0.0501 26 7 1.1458 -8.8785 -0.0485 27 6 -0.3514 -3.8195 -0.0147 28 7 -0.0715 -2.5409 -0.0013 29 1 -0.4850 0.8401 0.0004 30 1 2.9302 -3.8706 -0.0152 31 1 1.8704 -6.3418 -0.0293 32 1 -2.0880 -8.9646 -0.0429 33 1 -3.0087 -10.9404 -0.0436 34 1 -4.0320 -13.1763 -0.0638 35 1 -0.1552 -14.9677 -0.0759 36 1 0.8845 -12.7394 -0.0653 37 1 -1.3422 -4.2494 -0.0177 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000762167704.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:43:36 Heat of formation + Delta-G solvation = 98.555847 kcal Electronic energy + Delta-G solvation = -26695.079892 eV Core-core repulsion = 22357.721940 eV Total energy + Delta-G solvation = -4337.357953 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.091 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.39540 -45.20269 -39.97424 -39.49050 -38.60487 -34.41359 -34.23623 -33.46417 -33.01177 -31.75661 -30.30555 -29.62704 -27.99466 -25.53683 -24.41990 -24.11588 -23.22368 -22.35636 -21.07706 -20.20659 -19.44637 -18.64834 -17.97263 -17.96214 -17.52809 -16.72101 -16.58482 -16.07827 -15.83515 -15.47587 -15.18836 -14.63510 -14.59317 -14.34068 -14.21899 -13.97972 -13.64788 -13.55832 -13.23621 -13.13222 -12.97991 -12.69764 -11.82290 -11.71565 -11.55568 -11.49536 -11.30500 -11.01748 -10.64428 -10.56014 -10.52341 -10.24823 -9.72307 -9.62238 -9.23087 -8.88288 -8.70909 -8.12431 -6.78507 -6.60360 -4.27803 0.03608 0.66747 1.16673 1.68740 2.53195 2.91030 3.02316 3.08127 3.09500 3.20928 3.21423 3.68274 3.69113 3.78341 3.87810 4.11315 4.26777 4.30650 4.36900 4.62367 4.68018 4.74834 4.81587 4.97980 5.01494 5.20518 5.33477 5.38002 5.54411 5.60437 5.68518 5.79566 6.19714 6.24245 6.37422 6.79073 6.88729 6.98259 7.16467 7.75748 7.81162 8.06929 8.18430 8.49905 8.70297 9.31355 9.59997 10.35497 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.050391 B = 0.001671 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 555.522819 B =16748.000342 C =17293.662842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.768 5.768 2 C 0.046 3.954 3 Si 0.936 3.064 4 H -0.270 1.270 5 H -0.275 1.275 6 H -0.263 1.263 7 C -0.322 4.322 8 H 0.118 0.882 9 N -0.139 5.139 10 C -0.079 4.079 11 C -0.066 4.066 12 N -0.600 5.600 13 C 0.575 3.425 14 O -0.518 6.518 15 C -0.005 4.005 16 C -0.160 4.160 17 C -0.001 4.001 18 C -0.027 4.027 19 C -0.060 4.060 20 C -0.149 4.149 21 C 0.110 3.890 22 F -0.136 7.136 23 C -0.151 4.151 24 C -0.065 4.065 25 O 0.126 5.874 26 N -0.332 5.332 27 C -0.028 4.028 28 N -0.260 5.260 29 H 0.276 0.724 30 H 0.148 0.852 31 H 0.403 0.597 32 H 0.185 0.815 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.143 0.857 36 H 0.144 0.856 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.068 -25.378 -0.130 25.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C -0.171 4.171 3 Si 0.760 3.240 4 H -0.195 1.195 5 H -0.200 1.200 6 H -0.188 1.188 7 C -0.455 4.455 8 H 0.135 0.865 9 N 0.094 4.906 10 C -0.230 4.230 11 C -0.172 4.172 12 N -0.242 5.242 13 C 0.358 3.642 14 O -0.393 6.393 15 C -0.163 4.163 16 C -0.182 4.182 17 C -0.064 4.064 18 C -0.029 4.029 19 C -0.079 4.079 20 C -0.168 4.168 21 C 0.090 3.910 22 F -0.115 7.115 23 C -0.170 4.170 24 C -0.083 4.083 25 O 0.050 5.950 26 N -0.032 5.032 27 C -0.204 4.204 28 N -0.091 5.091 29 H 0.086 0.914 30 H 0.165 0.835 31 H 0.237 0.763 32 H 0.202 0.798 33 H 0.162 0.838 34 H 0.162 0.838 35 H 0.161 0.839 36 H 0.162 0.838 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -1.273 -23.246 -0.117 23.281 hybrid contribution 0.402 -0.659 -0.018 0.772 sum -0.871 -23.904 -0.135 23.921 Atomic orbital electron populations 1.70214 1.06163 1.28123 1.34925 1.25664 0.95732 1.00344 0.95399 0.85805 0.79403 0.79808 0.79018 1.19537 1.20027 1.18754 1.19917 0.91748 0.80485 1.53311 0.86470 1.44573 1.04075 1.03328 1.38634 1.21265 0.96899 0.85255 1.19619 1.17234 0.94619 0.80581 1.24746 1.42287 1.08096 1.04785 1.69003 1.16624 0.85035 0.82359 0.80139 1.90706 1.25473 1.72550 1.50617 1.23546 0.89393 0.97324 1.06067 1.22622 1.01921 0.88794 1.04820 1.22271 0.83428 0.94925 1.05737 1.17594 0.92794 0.87786 1.04693 1.21031 0.92806 0.97785 0.96267 1.21083 1.01053 0.90939 1.03740 1.17914 0.91577 0.80117 1.01368 1.91531 1.85378 1.40969 1.93589 1.21102 0.92999 0.99097 1.03788 1.21173 1.00779 0.90373 0.96025 1.84846 1.24557 1.19154 1.66432 1.74154 1.23354 0.89136 1.16534 1.24125 0.97919 0.90762 1.07579 1.78269 0.90096 1.14932 1.25754 0.91359 0.83475 0.76262 0.79790 0.83846 0.83776 0.83940 0.83783 0.80617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -21.30 11.81 55.50 0.66 -20.64 16 2 C 0.05 1.18 5.50 -17.50 -0.10 1.09 16 3 Si 0.94 18.77 29.55 -169.99 -5.02 13.74 16 4 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 7 C -0.32 -8.48 10.25 -14.82 -0.15 -8.64 16 8 H 0.12 2.75 7.83 -52.49 -0.41 2.34 16 9 N -0.14 -3.81 3.74 -11.40 -0.04 -3.86 16 10 C -0.08 -1.88 11.49 -16.38 -0.19 -2.07 16 11 C -0.07 -1.55 6.90 -83.87 -0.58 -2.13 16 12 N -0.60 -11.42 5.46 -10.72 -0.06 -11.48 16 13 C 0.58 10.69 7.82 -12.12 -0.09 10.60 16 14 O -0.52 -11.07 14.09 5.34 0.08 -11.00 16 15 C 0.00 -0.07 7.18 -82.63 -0.59 -0.66 16 16 C -0.16 -1.84 10.34 -38.72 -0.40 -2.24 16 17 C 0.00 -0.01 7.15 -36.21 -0.26 -0.27 16 18 C -0.03 -0.21 5.87 -104.97 -0.62 -0.82 16 19 C -0.06 -0.38 9.58 -39.20 -0.38 -0.76 16 20 C -0.15 -0.89 10.01 -39.57 -0.40 -1.28 16 21 C 0.11 0.74 7.30 -39.32 -0.29 0.45 16 22 F -0.14 -1.05 17.26 2.25 0.04 -1.01 16 23 C -0.15 -0.88 10.01 -39.58 -0.40 -1.28 16 24 C -0.07 -0.41 9.73 -39.20 -0.38 -0.79 16 25 O 0.13 1.41 11.01 16.03 0.18 1.59 16 26 N -0.33 -4.48 11.82 33.35 0.39 -4.09 16 27 C -0.03 -0.74 10.85 -17.03 -0.18 -0.93 16 28 N -0.26 -7.52 10.39 30.81 0.32 -7.20 16 29 H 0.28 6.98 8.31 -40.82 -0.34 6.64 16 30 H 0.15 2.92 8.06 -52.48 -0.42 2.50 16 31 H 0.40 6.48 8.58 -40.82 -0.35 6.13 16 32 H 0.18 1.76 7.46 -52.49 -0.39 1.37 16 33 H 0.14 0.69 7.14 -52.49 -0.38 0.32 16 34 H 0.14 0.60 8.06 -52.48 -0.42 0.17 16 35 H 0.14 0.56 8.06 -52.49 -0.42 0.13 16 36 H 0.14 0.68 7.95 -52.49 -0.42 0.27 16 37 H 0.18 4.52 5.92 -52.49 -0.31 4.21 16 LS Contribution 343.80 15.07 5.18 5.18 Total: -1.00 -33.13 343.80 -5.94 -39.07 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -2.66 Total: 9.41 kcal Atomic # 6 Polarization: -4.72 SS G_CDS: -5.00 Total: -9.72 kcal Atomic # 7 Polarization: -48.55 SS G_CDS: 1.27 Total: -47.28 kcal Atomic # 8 Polarization: -9.66 SS G_CDS: 0.25 Total: -9.40 kcal Atomic # 9 Polarization: -1.05 SS G_CDS: 0.04 Total: -1.01 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.02 Total: 13.74 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.13 -5.94 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000762167704.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.628 kcal (2) G-P(sol) polarization free energy of solvation -33.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 104.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds