Wall clock time and date at job start Wed Apr 1 2020 01:19:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.30909 * 121.83983 * 2 1 4 4 S 1.75785 * 109.82075 * 179.97438 * 3 2 1 5 5 C 1.76249 * 90.69946 * 359.97438 * 4 3 2 6 6 N 1.32356 * 141.95705 * 180.02562 * 5 4 3 7 7 C 1.33876 * 109.13793 * 179.37747 * 6 5 4 8 8 C 1.50699 * 125.80297 * 180.02562 * 7 6 5 9 9 C 1.50702 * 109.47285 * 305.50074 * 8 7 6 10 10 O 1.21279 * 119.99630 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00484 * 180.02562 * 9 8 7 12 12 C 1.39465 * 120.00629 * 174.98269 * 11 9 8 13 13 C 1.38594 * 119.58150 * 185.37416 * 12 11 9 14 14 C 1.40810 * 118.79480 * 179.97438 * 13 12 11 15 15 C 1.41540 * 120.99884 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00421 * 151.69285 * 15 14 13 17 17 C 1.40038 * 119.99828 * 331.69097 * 15 14 13 18 18 N 1.30747 * 119.99726 * 350.17790 * 17 15 14 19 19 Si 1.86790 * 120.00255 * 170.18015 * 17 15 14 20 20 H 1.48501 * 109.47298 * 359.97438 * 19 17 15 21 21 H 1.48502 * 109.47425 * 120.00069 * 19 17 15 22 22 H 1.48503 * 109.47424 * 240.00222 * 19 17 15 23 23 C 1.41178 * 118.00868 * 359.97438 * 14 13 12 24 24 C 1.37594 * 119.01065 * 0.02562 * 23 14 13 25 25 N 1.32078 * 121.11211 * 359.74108 * 24 23 14 26 26 C 1.34332 * 108.38990 * 0.51143 * 7 6 5 27 27 N 1.35154 * 109.22221 * 359.76041 * 5 4 3 28 28 H 1.09007 * 109.46638 * 90.02353 * 1 2 3 29 29 H 1.08997 * 109.46865 * 330.02864 * 1 2 3 30 30 H 1.08993 * 109.47119 * 210.02255 * 1 2 3 31 31 H 1.08000 * 125.09104 * 359.97428 * 3 2 1 32 32 H 1.08993 * 109.47345 * 65.50692 * 8 7 6 33 33 H 1.09003 * 109.47230 * 185.50667 * 8 7 6 34 34 H 0.97009 * 119.99500 * 354.98295 * 11 9 8 35 35 H 1.07998 * 120.60561 * 359.97438 * 13 12 11 36 36 H 0.96999 * 119.99940 * 179.97438 * 18 17 15 37 37 H 1.08004 * 120.49258 * 179.97438 * 23 14 13 38 38 H 1.08000 * 119.43772 * 179.97438 * 24 23 14 39 39 H 1.07998 * 126.44116 * 179.58883 * 26 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1976 1.1121 0.0000 4 16 3.9169 0.7461 0.0007 5 6 3.5710 -0.9821 0.0018 6 7 4.1662 -2.1643 0.0031 7 6 3.2339 -3.1251 0.0169 8 6 3.4971 -4.6089 0.0235 9 6 4.3873 -4.9663 -1.1388 10 8 4.7705 -4.1013 -1.8975 11 7 4.7574 -6.2473 -1.3353 12 6 5.4935 -6.5947 -2.4677 13 6 5.7736 -7.9286 -2.7190 14 6 6.5175 -8.2608 -3.8675 15 6 6.8305 -9.6078 -4.1689 16 1 6.9725 -9.9127 -5.1952 17 6 6.9562 -10.5454 -3.1363 18 7 6.9761 -10.1475 -1.8910 19 14 7.0955 -12.3642 -3.5379 20 1 7.0470 -12.5512 -5.0103 21 1 8.3817 -12.8899 -3.0138 22 1 5.9679 -13.0979 -2.9090 23 6 6.9419 -7.2100 -4.7094 24 6 6.6153 -5.9153 -4.3771 25 7 5.9113 -5.6460 -3.2924 26 6 2.0240 -2.5416 0.0131 27 7 2.2323 -1.1680 0.0069 28 1 -0.3633 -0.0004 -1.0278 29 1 -0.3633 0.8902 0.5134 30 1 -0.3633 -0.8897 0.5142 31 1 1.7744 2.1057 -0.0004 32 1 3.9882 -4.8867 0.9561 33 1 2.5526 -5.1459 -0.0638 34 1 4.5117 -6.9277 -0.6889 35 1 5.4275 -8.6993 -2.0463 36 1 7.0628 -10.7969 -1.1757 37 1 7.5152 -7.4191 -5.6005 38 1 6.9368 -5.1061 -5.0160 39 1 1.0687 -3.0455 0.0153 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001355711368.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:19:27 Heat of formation + Delta-G solvation = 103.937895 kcal Electronic energy + Delta-G solvation = -25475.209080 eV Core-core repulsion = 21704.297687 eV Total energy + Delta-G solvation = -3770.911394 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 342.089 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.75067 -39.45440 -37.87070 -37.09966 -34.22547 -33.60877 -32.20094 -30.91361 -30.47473 -29.54122 -28.41057 -26.79261 -25.92788 -23.32216 -22.23144 -21.84023 -20.50969 -20.26561 -19.36379 -18.34674 -17.58560 -16.84910 -16.24215 -15.78156 -15.59728 -15.18029 -14.98153 -14.73832 -14.35558 -14.15855 -13.94791 -13.74353 -13.64910 -13.21408 -13.00121 -12.76210 -12.67712 -12.59227 -12.53354 -11.84138 -11.43029 -11.37915 -11.31104 -11.16933 -10.87867 -10.55484 -10.23043 -10.08890 -10.04778 -9.63329 -9.33852 -9.26310 -8.79770 -7.90752 -7.75855 -7.64166 -6.96798 -6.70828 -4.58181 0.73417 0.79654 1.47920 2.05505 2.37120 2.63999 2.81446 2.82727 3.04323 3.09831 3.24590 3.57338 3.80930 3.89255 4.15066 4.32771 4.58769 4.73898 4.76699 4.92115 4.95893 5.12022 5.26686 5.30375 5.34608 5.48363 5.63627 5.73700 5.95919 6.05986 6.40768 6.64519 6.71688 6.74238 6.85247 7.01019 7.16367 7.43862 7.53214 7.75789 7.85176 8.01662 8.28734 8.49080 8.75821 8.80247 9.02164 9.75414 10.15201 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.027140 B = 0.002116 C = 0.002043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.441126 B =13228.656231 C =13699.826549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.084 3.916 3 C -0.236 4.236 4 S 0.181 5.819 5 C 0.138 3.862 6 N -0.420 5.420 7 C 0.073 3.927 8 C -0.059 4.059 9 C 0.498 3.502 10 O -0.459 6.459 11 N -0.662 5.662 12 C 0.339 3.661 13 C -0.238 4.238 14 C 0.143 3.857 15 C -0.457 4.457 16 H 0.081 0.919 17 C 0.075 3.925 18 N -0.797 5.797 19 Si 0.914 3.086 20 H -0.260 1.260 21 H -0.274 1.274 22 H -0.272 1.272 23 C -0.282 4.282 24 C 0.117 3.883 25 N -0.550 5.550 26 C -0.050 4.050 27 N -0.407 5.407 28 H 0.084 0.916 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.193 0.807 32 H 0.108 0.892 33 H 0.107 0.893 34 H 0.407 0.593 35 H 0.129 0.871 36 H 0.280 0.720 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.528 15.326 9.071 22.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.028 4.028 3 C -0.374 4.374 4 S 0.432 5.568 5 C -0.228 4.228 6 N -0.142 5.142 7 C -0.059 4.059 8 C -0.101 4.101 9 C 0.281 3.719 10 O -0.327 6.327 11 N -0.309 5.309 12 C 0.114 3.886 13 C -0.263 4.263 14 C 0.135 3.865 15 C -0.489 4.489 16 H 0.099 0.901 17 C -0.142 4.142 18 N -0.423 5.423 19 Si 0.738 3.262 20 H -0.184 1.184 21 H -0.199 1.199 22 H -0.197 1.197 23 C -0.305 4.305 24 C -0.037 4.037 25 N -0.269 5.269 26 C -0.182 4.182 27 N -0.087 5.087 28 H 0.102 0.898 29 H 0.108 0.892 30 H 0.093 0.907 31 H 0.210 0.790 32 H 0.126 0.874 33 H 0.126 0.874 34 H 0.242 0.758 35 H 0.147 0.853 36 H 0.091 0.909 37 H 0.120 0.880 38 H 0.140 0.860 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -12.507 17.482 8.973 23.293 hybrid contribution -1.789 -2.856 0.043 3.370 sum -14.296 14.626 9.016 22.352 Atomic orbital electron populations 1.20668 0.86596 1.04327 1.03935 1.19016 0.96004 0.83393 1.04349 1.24777 0.97095 1.01793 1.13695 1.84740 1.01979 0.88005 1.82040 1.26187 0.82881 1.01467 1.12292 1.70561 1.30975 0.94275 1.18432 1.19984 0.88050 0.94719 1.03141 1.20024 1.01368 0.89099 0.99564 1.20304 0.82132 0.82788 0.86721 1.90826 1.51018 1.46543 1.44272 1.43435 1.54323 1.09595 1.23522 1.18208 0.93058 0.89967 0.87396 1.21596 1.07818 0.92809 1.04096 1.17594 0.86418 0.92983 0.89553 1.19581 1.42410 0.92429 0.94488 0.90089 1.25931 0.92287 1.01529 0.94490 1.69762 1.35975 1.36442 1.00155 0.86174 0.78526 0.81476 0.80021 1.18414 1.19932 1.19748 1.21943 1.10270 0.93660 1.04672 1.21771 0.94423 0.94646 0.92909 1.67244 1.18164 1.35144 1.06362 1.22373 1.00902 0.78848 1.16104 1.43755 1.07215 1.05742 1.51988 0.89752 0.89249 0.90660 0.78991 0.87402 0.87445 0.75829 0.85287 0.90926 0.88002 0.85986 0.80073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.50 10.21 36.01 0.37 -0.13 16 2 C 0.08 0.77 6.75 -81.75 -0.55 0.22 16 3 C -0.24 -1.87 10.80 29.04 0.31 -1.56 16 4 S 0.18 2.02 23.37 -107.50 -2.51 -0.49 16 5 C 0.14 2.14 8.93 -88.70 -0.79 1.35 16 6 N -0.42 -7.77 10.66 -9.77 -0.10 -7.88 16 7 C 0.07 1.14 5.85 -83.08 -0.49 0.65 16 8 C -0.06 -0.81 6.26 -29.03 -0.18 -0.99 16 9 C 0.50 9.80 7.78 -10.99 -0.09 9.71 16 10 O -0.46 -11.35 13.80 5.56 0.08 -11.27 16 11 N -0.66 -13.23 5.39 -11.49 -0.06 -13.29 16 12 C 0.34 8.44 7.42 -154.71 -1.15 7.29 16 13 C -0.24 -6.13 8.59 -38.48 -0.33 -6.46 16 14 C 0.14 3.83 5.58 -106.55 -0.59 3.24 16 15 C -0.46 -11.94 9.13 -37.65 -0.34 -12.29 16 16 H 0.08 2.03 7.87 -52.49 -0.41 1.62 16 17 C 0.08 1.84 5.30 -17.34 -0.09 1.75 16 18 N -0.80 -19.91 10.83 55.55 0.60 -19.31 16 19 Si 0.91 18.20 29.57 -169.99 -5.03 13.18 16 20 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 23 C -0.28 -7.12 9.90 -38.70 -0.38 -7.50 16 24 C 0.12 2.93 11.15 -17.68 -0.20 2.73 16 25 N -0.55 -14.65 7.85 -12.52 -0.10 -14.75 16 26 C -0.05 -0.64 11.85 -15.71 -0.19 -0.82 16 27 N -0.41 -5.23 3.19 -59.54 -0.19 -5.42 16 28 H 0.08 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.09 0.25 8.10 -51.93 -0.42 -0.17 16 30 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.19 0.76 8.06 -52.49 -0.42 0.34 16 32 H 0.11 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.11 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.41 6.50 8.70 -40.82 -0.36 6.14 16 35 H 0.13 3.28 6.27 -52.49 -0.33 2.95 16 36 H 0.28 6.31 8.29 -40.82 -0.34 5.97 16 37 H 0.10 2.36 8.06 -52.48 -0.42 1.94 16 38 H 0.12 2.70 8.06 -52.49 -0.42 2.28 16 39 H 0.18 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 355.45 15.07 5.36 5.36 Total: -1.00 -37.12 355.45 -10.68 -47.80 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: -4.03 Total: 8.87 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: -4.69 Total: -2.80 kcal Atomic # 7 Polarization: -60.79 SS G_CDS: 0.15 Total: -60.65 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.08 Total: -11.27 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.18 kcal Atomic # 16 Polarization: 2.02 SS G_CDS: -2.51 Total: -0.49 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.12 -10.68 -47.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001355711368.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.734 kcal (2) G-P(sol) polarization free energy of solvation -37.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.796 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds