Wall clock time and date at job start Wed Apr 1 2020 00:51:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47145 * 239.99733 * 3 2 1 5 5 H 1.48498 * 109.47050 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47170 * 119.99933 * 3 2 1 7 7 C 1.38814 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99700 * 179.97438 * 7 2 1 9 9 N 1.36933 * 120.00104 * 0.02562 * 7 2 1 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 2 11 11 H 1.09002 * 109.47021 * 34.99609 * 10 9 7 12 12 C 1.53005 * 109.47414 * 154.99497 * 10 9 7 13 13 C 1.52997 * 109.47452 * 180.02562 * 12 10 9 14 14 C 1.53002 * 109.46817 * 300.00239 * 13 12 10 15 15 H 1.08992 * 109.47063 * 299.99823 * 14 13 12 16 16 N 1.46499 * 109.46799 * 179.97438 * 14 13 12 17 17 C 1.34778 * 119.99771 * 85.00174 * 16 14 13 18 18 O 1.21279 * 120.00041 * 359.97438 * 17 16 14 19 19 C 1.50703 * 119.99935 * 179.97438 * 17 16 14 20 20 C 1.50699 * 109.47042 * 179.97438 * 19 17 16 21 21 C 1.33352 * 125.18824 * 89.72575 * 20 19 17 22 22 C 1.38473 * 114.92742 * 179.79133 * 21 20 19 23 23 C 1.33504 * 114.88518 * 0.49721 * 22 21 20 24 24 Cl 1.73596 * 125.20673 * 179.71045 * 23 22 21 25 25 S 1.75881 * 125.18962 * 270.02359 * 20 19 17 26 26 C 1.53000 * 109.47233 * 60.00194 * 14 13 12 27 27 C 1.52997 * 109.47060 * 299.99657 * 26 14 13 28 28 H 0.96996 * 120.00649 * 0.02562 * 1 2 3 29 29 H 0.97007 * 120.00049 * 359.97438 * 9 7 2 30 30 H 1.09002 * 109.46935 * 60.00059 * 12 10 9 31 31 H 1.09001 * 109.46812 * 300.00401 * 12 10 9 32 32 H 1.08993 * 109.47194 * 179.97438 * 13 12 10 33 33 H 1.09002 * 109.46695 * 59.99734 * 13 12 10 34 34 H 0.97006 * 120.00568 * 264.99947 * 16 14 13 35 35 H 1.08995 * 109.47091 * 300.00103 * 19 17 16 36 36 H 1.08999 * 109.47030 * 59.99811 * 19 17 16 37 37 H 1.07995 * 122.53460 * 359.97216 * 21 20 19 38 38 H 1.08000 * 122.55753 * 180.22589 * 22 21 20 39 39 H 1.09002 * 109.47398 * 59.99826 * 26 14 13 40 40 H 1.09001 * 109.47194 * 180.02562 * 26 14 13 41 41 H 1.08996 * 109.47853 * 180.02562 * 27 26 14 42 42 H 1.09002 * 109.47153 * 300.00319 * 27 26 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1040 1.6964 -1.2125 5 1 1.2851 2.7465 -0.0006 6 1 3.1039 1.6965 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0581 -3.6567 0.0005 11 1 2.9688 -3.5505 0.5899 12 6 1.1810 -4.7522 0.6103 13 6 1.9462 -6.0770 0.6109 14 6 2.3105 -6.4561 -0.8260 15 1 1.4001 -6.5627 -1.4156 16 7 3.0438 -7.7244 -0.8253 17 6 2.3705 -8.8920 -0.8250 18 8 1.1577 -8.8927 -0.8248 19 6 3.1248 -10.1967 -0.8250 20 6 2.1461 -11.3426 -0.8240 21 6 1.6425 -11.9240 -1.9133 22 6 0.7621 -12.9638 -1.6658 23 6 0.5435 -13.2193 -0.3738 24 17 -0.5122 -14.4544 0.2375 25 16 1.4883 -12.1125 0.6141 26 6 3.1877 -5.3608 -1.4356 27 6 2.4225 -4.0359 -1.4362 28 1 -0.4851 0.8400 -0.0004 29 1 0.3556 -2.3881 0.0005 30 1 0.2702 -4.8584 0.0209 31 1 0.9218 -4.4822 1.6340 32 1 1.3215 -6.8572 1.0457 33 1 2.8568 -5.9703 1.2005 34 1 4.0138 -7.7239 -0.8252 35 1 3.7513 -10.2542 -1.7150 36 1 3.7516 -10.2539 0.0649 37 1 1.9038 -11.6097 -2.9129 38 1 0.2852 -13.5225 -2.4575 39 1 4.0983 -5.2542 -0.8460 40 1 3.4469 -5.6306 -2.4594 41 1 3.0471 -3.2556 -1.8710 42 1 1.5120 -4.1425 -2.0259 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034748817.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:48 Heat of formation + Delta-G solvation = -15.270457 kcal Electronic energy + Delta-G solvation = -24156.276102 eV Core-core repulsion = 20481.302940 eV Total energy + Delta-G solvation = -3674.973162 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 342.091 amu Computer time = 2.07 seconds Orbital eigenvalues (eV) -40.18229 -38.49273 -37.82287 -36.89494 -34.87521 -33.17785 -32.36930 -30.60255 -30.41292 -27.94857 -26.71014 -24.02722 -23.41102 -22.32865 -21.31998 -20.55660 -19.82465 -19.45614 -17.92035 -17.28424 -16.97181 -16.35873 -15.99262 -15.33915 -15.10379 -14.38436 -14.12755 -13.90577 -13.80635 -13.66297 -13.59299 -13.33909 -13.21124 -12.85170 -12.60285 -12.34925 -12.04387 -11.80678 -11.80255 -11.47354 -11.41280 -11.03459 -10.88218 -10.80691 -10.74971 -10.71213 -10.27290 -10.18777 -10.01696 -9.72127 -9.55597 -9.03700 -8.88991 -8.85268 -8.82662 -6.94151 -5.74933 -3.03690 0.43695 0.77216 1.47170 1.89472 2.24996 2.48098 3.09539 3.43810 3.48190 3.49509 4.16733 4.58086 4.60941 4.68816 4.90115 4.93161 5.01166 5.04688 5.17608 5.29091 5.53359 5.56636 5.57138 5.64910 5.70949 5.73929 5.83059 5.87056 5.97675 6.03309 6.25767 6.27162 6.29831 6.44000 6.58407 6.62115 6.69892 6.97926 7.12319 7.38109 7.70043 8.09552 8.43771 9.54485 10.13652 10.48084 11.47697 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.030457 B = 0.001772 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 919.096619 B =15796.127754 C =16239.334141 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.287 1.287 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.725 5.725 10 C 0.177 3.823 11 H 0.046 0.954 12 C -0.121 4.121 13 C -0.120 4.120 14 C 0.146 3.854 15 H 0.087 0.913 16 N -0.725 5.725 17 C 0.510 3.490 18 O -0.525 6.525 19 C -0.073 4.073 20 C -0.151 4.151 21 C -0.121 4.121 22 C -0.115 4.115 23 C -0.152 4.152 24 Cl -0.018 7.018 25 S 0.164 5.836 26 C -0.121 4.121 27 C -0.132 4.132 28 H 0.255 0.745 29 H 0.384 0.616 30 H 0.061 0.939 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.398 0.602 35 H 0.116 0.884 36 H 0.106 0.894 37 H 0.147 0.853 38 H 0.148 0.852 39 H 0.063 0.937 40 H 0.059 0.941 41 H 0.066 0.934 42 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.015 -29.523 -2.265 30.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.370 4.370 8 H 0.087 0.913 9 N -0.366 5.366 10 C 0.067 3.933 11 H 0.064 0.936 12 C -0.160 4.160 13 C -0.160 4.160 14 C 0.042 3.958 15 H 0.106 0.894 16 N -0.376 5.376 17 C 0.294 3.706 18 O -0.401 6.401 19 C -0.115 4.115 20 C -0.270 4.270 21 C -0.151 4.151 22 C -0.147 4.147 23 C -0.296 4.296 24 Cl 0.011 6.989 25 S 0.428 5.572 26 C -0.160 4.160 27 C -0.173 4.173 28 H 0.065 0.935 29 H 0.217 0.783 30 H 0.079 0.921 31 H 0.084 0.916 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.232 0.768 35 H 0.134 0.866 36 H 0.124 0.876 37 H 0.164 0.836 38 H 0.166 0.834 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 7.298 -29.268 -0.624 30.171 hybrid contribution 0.282 0.625 -1.542 1.687 sum 7.580 -28.643 -2.166 29.708 Atomic orbital electron populations 1.69648 1.05092 1.25732 1.57651 1.24749 0.95505 0.97668 1.03139 0.86286 0.78518 0.83700 0.77780 1.21338 1.21728 1.21322 1.19191 0.90910 0.84181 1.42682 0.91287 1.42432 1.05822 0.99774 1.88522 1.20232 0.94375 0.86068 0.92583 0.93641 1.21763 0.98967 0.93637 1.01651 1.21834 1.00470 0.97876 0.95778 1.21123 0.95871 0.81395 0.97412 0.89450 1.46162 1.10208 1.05852 1.75362 1.20383 0.88422 0.85060 0.76702 1.90765 1.13656 1.87375 1.48277 1.20218 0.96356 0.89038 1.05918 1.23883 1.04764 1.02236 0.96090 1.19894 0.98654 0.96898 0.99657 1.20144 1.00266 0.99336 0.94991 1.25215 1.05595 1.01388 0.97370 1.98368 1.63066 1.50371 1.87124 1.84384 1.39109 1.26219 1.07514 1.21809 0.98672 0.95469 1.00030 1.22228 0.99714 0.94136 1.01232 0.93478 0.78273 0.92072 0.91626 0.92075 0.92067 0.76805 0.86634 0.87576 0.83566 0.83408 0.91829 0.92260 0.91553 0.92419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.26 13.06 55.49 0.72 -27.53 16 2 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 6 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 8 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 9 N -0.73 -18.04 5.12 -53.43 -0.27 -18.32 16 10 C 0.18 3.42 2.77 -67.93 -0.19 3.23 16 11 H 0.05 0.89 8.08 -51.93 -0.42 0.47 16 12 C -0.12 -2.04 5.39 -26.73 -0.14 -2.18 16 13 C -0.12 -1.65 5.49 -26.73 -0.15 -1.80 16 14 C 0.15 1.82 2.45 -67.93 -0.17 1.65 16 15 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 16 N -0.72 -6.80 5.08 -53.81 -0.27 -7.07 16 17 C 0.51 5.39 7.79 -10.98 -0.09 5.31 16 18 O -0.53 -8.01 15.70 5.56 0.09 -7.93 16 19 C -0.07 -0.49 6.19 -29.03 -0.18 -0.67 16 20 C -0.15 -1.33 5.00 -36.02 -0.18 -1.51 16 21 C -0.12 -1.03 10.05 -41.20 -0.41 -1.44 16 22 C -0.11 -0.99 10.13 -41.15 -0.42 -1.41 16 23 C -0.15 -1.43 7.10 29.08 0.21 -1.23 16 24 Cl -0.02 -0.16 29.29 -51.86 -1.52 -1.67 16 25 S 0.16 1.52 23.33 -107.50 -2.51 -0.98 16 26 C -0.12 -1.50 5.39 -26.73 -0.14 -1.64 16 27 C -0.13 -2.23 5.50 -26.73 -0.15 -2.38 16 28 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 29 H 0.38 10.26 7.80 -40.82 -0.32 9.94 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.40 2.44 8.60 -40.82 -0.35 2.09 16 35 H 0.12 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.15 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 376.86 15.07 5.68 5.68 Total: -1.00 -32.94 376.86 -11.46 -44.40 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: -6.10 Total: 7.44 kcal Atomic # 6 Polarization: -9.03 SS G_CDS: -2.25 Total: -11.28 kcal Atomic # 7 Polarization: -53.10 SS G_CDS: 0.18 Total: -52.92 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.93 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Atomic # 16 Polarization: 1.52 SS G_CDS: -2.51 Total: -0.98 kcal Atomic # 17 Polarization: -0.16 SS G_CDS: -1.52 Total: -1.67 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.94 -11.46 -44.40 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034748817.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.126 kcal (2) G-P(sol) polarization free energy of solvation -32.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.396 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.07 seconds