Wall clock time and date at job start Wed Apr 1 2020 02:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30130 * 121.06149 * 2 1 4 4 S 1.69950 * 105.76471 * 179.71144 * 3 2 1 5 5 C 1.72294 * 94.57270 * 0.34692 * 4 3 2 6 6 N 1.38325 * 127.50463 * 179.91656 * 5 4 3 7 7 C 1.46497 * 119.99646 * 359.67835 * 6 5 4 8 8 C 1.53001 * 109.46960 * 179.97438 * 7 6 5 9 9 H 1.08994 * 110.88879 * 308.88385 * 8 7 6 10 10 C 1.55156 * 111.00317 * 185.00030 * 8 7 6 11 11 C 1.54324 * 102.94413 * 206.42763 * 10 8 7 12 12 N 1.47016 * 107.26889 * 22.19488 * 11 10 8 13 13 C 1.34777 * 125.64953 * 181.02636 * 12 11 10 14 14 O 1.21283 * 120.00463 * 180.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 359.74753 * 13 12 11 16 16 S 1.80997 * 109.47151 * 180.27780 * 15 13 12 17 17 C 1.76196 * 100.00314 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00626 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00584 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46793 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99523 * 21 19 17 24 24 H 1.48500 * 109.47237 * 240.00020 * 21 19 17 25 25 C 1.47426 * 108.70680 * 1.28811 * 12 11 10 26 26 N 1.31283 * 121.06368 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47315 * 270.01995 * 1 2 3 28 28 H 1.09003 * 109.46998 * 30.02523 * 1 2 3 29 29 H 1.08999 * 109.47048 * 150.02214 * 1 2 3 30 30 H 0.97001 * 120.00131 * 179.68400 * 6 5 4 31 31 H 1.09008 * 109.46694 * 60.00401 * 7 6 5 32 32 H 1.08995 * 109.47817 * 300.00384 * 7 6 5 33 33 H 1.09003 * 110.71620 * 88.06523 * 10 8 7 34 34 H 1.08998 * 110.72257 * 324.79631 * 10 8 7 35 35 H 1.09004 * 109.87967 * 262.78223 * 11 10 8 36 36 H 1.08997 * 110.00987 * 141.68728 * 11 10 8 37 37 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 38 38 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 39 39 H 0.97003 * 120.00297 * 179.97438 * 20 19 17 40 40 H 1.08999 * 110.36638 * 94.48082 * 25 12 11 41 41 H 1.09000 * 110.36899 * 216.80900 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1147 0.0000 4 16 3.8177 0.6664 0.0082 5 6 3.4971 -1.0265 0.0009 6 7 4.4186 -2.0581 0.0014 7 6 5.8528 -1.7591 0.0017 8 6 6.6464 -3.0672 0.0029 9 1 6.3011 -3.7305 0.7959 10 6 8.1685 -2.7941 0.1295 11 6 8.7988 -4.0279 -0.5502 12 7 7.7840 -4.5972 -1.4488 13 6 7.9386 -5.6977 -2.2113 14 8 7.0297 -6.0780 -2.9186 15 6 9.2430 -6.4520 -2.1898 16 16 9.1414 -7.8651 -3.3163 17 6 10.7519 -8.5459 -3.0993 18 1 11.4496 -8.0771 -2.4210 19 6 11.1239 -9.6854 -3.7991 20 7 10.2732 -10.2578 -4.6246 21 14 12.8311 -10.4076 -3.5685 22 1 13.5893 -9.5838 -2.5928 23 1 12.7159 -11.7978 -3.0593 24 1 13.5456 -10.4148 -4.8703 25 6 6.5714 -3.7613 -1.3825 26 7 2.1844 -1.1246 0.0005 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 4.1152 -2.9794 0.0014 31 1 6.1033 -1.1818 0.8918 32 1 6.1040 -1.1821 -0.8882 33 1 8.4642 -2.7378 1.1772 34 1 8.4417 -1.8809 -0.3990 35 1 9.0805 -4.7630 0.2038 36 1 9.6766 -3.7300 -1.1236 37 1 10.0500 -5.7916 -2.5074 38 1 9.4408 -6.8072 -1.1785 39 1 10.5332 -11.0539 -5.1140 40 1 6.5774 -3.0201 -2.1816 41 1 5.6782 -4.3828 -1.4470 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001098508708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:42 Heat of formation + Delta-G solvation = 19.759483 kcal Electronic energy + Delta-G solvation = -23597.985429 eV Core-core repulsion = 19958.867737 eV Total energy + Delta-G solvation = -3639.117692 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 342.093 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.50379 -40.06654 -38.05825 -36.46340 -33.08498 -32.46869 -31.53917 -29.95802 -29.80256 -29.03491 -26.08523 -25.45298 -23.96539 -23.07141 -21.43261 -20.17669 -19.46649 -19.10580 -17.83857 -17.31529 -16.92329 -16.63293 -16.11609 -15.52378 -15.40069 -14.84436 -14.74431 -14.44053 -14.27518 -13.98295 -13.66318 -13.40893 -13.05073 -12.95347 -12.80592 -12.62278 -12.47780 -12.10436 -11.92272 -11.85424 -11.76977 -11.66292 -11.29825 -11.18835 -11.10242 -11.05758 -10.79396 -9.97035 -9.85163 -9.77533 -9.51694 -9.11278 -8.64633 -8.60778 -8.28135 -6.55203 -6.25692 -3.96861 0.40620 0.63491 1.45946 2.24574 2.36891 2.79222 2.95931 3.18608 3.22227 3.27922 3.53198 3.84548 3.96304 4.01216 4.16295 4.21388 4.61680 4.74377 4.76953 4.90505 4.94380 5.02379 5.06534 5.09660 5.13537 5.18792 5.32334 5.38272 5.41523 5.50561 5.57226 5.62257 5.67093 5.72234 5.85269 6.01404 6.07012 6.27566 6.62602 7.42778 7.53014 7.56159 8.31282 8.45013 9.19693 10.81796 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.031769 B = 0.001726 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.141271 B =16219.969036 C =16897.806695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.307 3.693 3 N -0.505 5.505 4 S 0.177 5.823 5 C 0.346 3.654 6 N -0.666 5.666 7 C 0.128 3.872 8 C -0.115 4.115 9 H 0.099 0.901 10 C -0.120 4.120 11 C 0.102 3.898 12 N -0.628 5.628 13 C 0.549 3.451 14 O -0.513 6.513 15 C -0.147 4.147 16 S -0.061 6.061 17 C -0.535 4.535 18 H 0.073 0.927 19 C 0.073 3.927 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.280 1.280 25 C 0.111 3.889 26 N -0.586 5.586 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.089 0.911 30 H 0.419 0.581 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.268 0.732 40 H 0.069 0.931 41 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.423 22.530 14.156 28.577 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.018 3.982 3 N -0.339 5.339 4 S 0.310 5.690 5 C -0.033 4.033 6 N -0.305 5.305 7 C 0.004 3.996 8 C -0.135 4.135 9 H 0.118 0.882 10 C -0.158 4.158 11 C -0.022 4.022 12 N -0.366 5.366 13 C 0.337 3.663 14 O -0.387 6.387 15 C -0.297 4.297 16 S 0.166 5.834 17 C -0.684 4.684 18 H 0.091 0.909 19 C -0.136 4.136 20 N -0.502 5.502 21 Si 0.746 3.254 22 H -0.196 1.196 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.012 4.012 26 N -0.322 5.322 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.108 0.892 30 H 0.258 0.742 31 H 0.100 0.900 32 H 0.099 0.901 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.108 0.892 38 H 0.107 0.893 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -11.327 22.987 12.915 28.696 hybrid contribution 1.657 -1.289 0.968 2.311 sum -9.671 21.698 13.882 27.514 Atomic orbital electron populations 1.20414 0.83911 1.04433 1.04125 1.23212 0.99759 0.82161 0.93109 1.77561 0.97049 1.25213 1.34073 1.84935 1.13912 0.97888 1.72294 1.25164 0.90252 0.95465 0.92426 1.43981 1.03487 1.06227 1.76792 1.21734 0.76761 0.97785 1.03337 1.22645 0.96047 0.95750 0.99043 0.88236 1.22630 0.92643 0.98431 1.02107 1.21998 0.91998 0.94994 0.93198 1.48484 1.15224 1.27573 1.45288 1.20069 0.89651 0.78434 0.78119 1.90723 1.42608 1.66059 1.39321 1.23509 0.96348 1.03441 1.06435 1.85426 1.20692 1.24467 1.52863 1.22892 0.99462 1.15086 1.30917 0.90854 1.25000 0.98337 0.95785 0.94469 1.70028 1.34835 1.19968 1.25387 0.86107 0.82287 0.78854 0.78187 1.19611 1.20536 1.20536 1.22258 0.89650 0.94035 0.95260 1.67355 1.03068 1.30060 1.31721 0.89420 0.89538 0.89219 0.74160 0.89966 0.90070 0.89268 0.89816 0.90987 0.90874 0.89241 0.89261 0.92190 0.91295 0.90238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.44 10.42 36.01 0.38 -0.06 16 2 C 0.31 3.15 7.56 -159.04 -1.20 1.95 16 3 N -0.50 -5.62 12.15 29.54 0.36 -5.26 16 4 S 0.18 1.58 23.17 -107.50 -2.49 -0.91 16 5 C 0.35 3.16 8.57 -86.34 -0.74 2.42 16 6 N -0.67 -4.40 5.65 -61.57 -0.35 -4.74 16 7 C 0.13 0.58 5.19 -4.04 -0.02 0.56 16 8 C -0.12 -0.63 3.06 -88.35 -0.27 -0.90 16 9 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 10 C -0.12 -0.58 6.42 -24.90 -0.16 -0.74 16 11 C 0.10 0.87 6.48 -3.07 -0.02 0.85 16 12 N -0.63 -8.03 3.32 -170.38 -0.57 -8.60 16 13 C 0.55 10.09 7.87 -10.98 -0.09 10.01 16 14 O -0.51 -11.58 16.12 5.55 0.09 -11.49 16 15 C -0.15 -2.91 5.35 36.01 0.19 -2.71 16 16 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 17 C -0.54 -15.04 9.50 30.94 0.29 -14.74 16 18 H 0.07 1.95 7.80 -52.48 -0.41 1.54 16 19 C 0.07 2.07 5.49 -17.43 -0.10 1.97 16 20 N -0.87 -25.91 13.22 55.49 0.73 -25.17 16 21 Si 0.92 21.11 29.55 -169.99 -5.02 16.08 16 22 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 23 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C 0.11 1.08 6.33 -2.41 -0.02 1.07 16 26 N -0.59 -6.34 10.61 -14.57 -0.15 -6.49 16 27 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.42 2.66 8.60 -40.82 -0.35 2.31 16 31 H 0.08 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.08 0.35 7.96 -51.93 -0.41 -0.06 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.32 8.04 -51.93 -0.42 -0.10 16 35 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 37 H 0.09 1.64 8.14 -51.91 -0.42 1.22 16 38 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 39 H 0.27 7.42 8.31 -40.82 -0.34 7.09 16 40 H 0.07 0.66 7.91 -51.93 -0.41 0.25 16 41 H 0.08 0.88 8.03 -51.93 -0.42 0.46 16 LS Contribution 375.99 15.07 5.67 5.67 Total: -1.00 -36.79 375.99 -11.48 -48.27 By element: Atomic # 1 Polarization: 2.61 SS G_CDS: -5.78 Total: -3.17 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: -1.75 Total: -0.33 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 0.02 Total: -50.27 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: -0.06 SS G_CDS: -4.70 Total: -4.76 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.79 -11.48 -48.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.027 kcal (2) G-P(sol) polarization free energy of solvation -36.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.477 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds