Wall clock time and date at job start Wed Apr 1 2020 02:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30130 * 121.06149 * 2 1 4 4 S 1.69950 * 105.76471 * 179.71144 * 3 2 1 5 5 C 1.72294 * 94.57270 * 0.34692 * 4 3 2 6 6 N 1.38325 * 127.50463 * 179.91656 * 5 4 3 7 7 C 1.46497 * 119.99646 * 359.67835 * 6 5 4 8 8 C 1.53001 * 109.46960 * 179.97438 * 7 6 5 9 9 H 1.08994 * 110.88879 * 308.88385 * 8 7 6 10 10 C 1.55156 * 111.00317 * 185.00030 * 8 7 6 11 11 C 1.54324 * 102.94413 * 206.42763 * 10 8 7 12 12 N 1.47016 * 107.26889 * 22.19488 * 11 10 8 13 13 C 1.34777 * 125.64953 * 181.02636 * 12 11 10 14 14 O 1.21283 * 120.00463 * 180.02562 * 13 12 11 15 15 C 1.50700 * 119.99675 * 359.74753 * 13 12 11 16 16 S 1.80997 * 109.47151 * 180.27780 * 15 13 12 17 17 C 1.76196 * 100.00314 * 179.97438 * 16 15 13 18 18 H 1.08005 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00626 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99674 * 359.97438 * 19 17 16 21 21 Si 1.86796 * 120.00584 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46793 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47282 * 119.99523 * 21 19 17 24 24 H 1.48500 * 109.47237 * 240.00020 * 21 19 17 25 25 C 1.47426 * 108.70680 * 1.28811 * 12 11 10 26 26 N 1.31283 * 121.06368 * 179.97438 * 2 1 3 27 27 H 1.08993 * 109.47315 * 270.01995 * 1 2 3 28 28 H 1.09003 * 109.46998 * 30.02523 * 1 2 3 29 29 H 1.08999 * 109.47048 * 150.02214 * 1 2 3 30 30 H 0.97001 * 120.00131 * 179.68400 * 6 5 4 31 31 H 1.09008 * 109.46694 * 60.00401 * 7 6 5 32 32 H 1.08995 * 109.47817 * 300.00384 * 7 6 5 33 33 H 1.09003 * 110.71620 * 88.06523 * 10 8 7 34 34 H 1.08998 * 110.72257 * 324.79631 * 10 8 7 35 35 H 1.09004 * 109.87967 * 262.78223 * 11 10 8 36 36 H 1.08997 * 110.00987 * 141.68728 * 11 10 8 37 37 H 1.09009 * 109.47352 * 300.27556 * 15 13 12 38 38 H 1.08998 * 109.47585 * 60.27844 * 15 13 12 39 39 H 0.97003 * 120.00297 * 179.97438 * 20 19 17 40 40 H 1.08999 * 110.36638 * 94.48082 * 25 12 11 41 41 H 1.09000 * 110.36899 * 216.80900 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1784 1.1147 0.0000 4 16 3.8177 0.6664 0.0082 5 6 3.4971 -1.0265 0.0009 6 7 4.4186 -2.0581 0.0014 7 6 5.8528 -1.7591 0.0017 8 6 6.6464 -3.0672 0.0029 9 1 6.3011 -3.7305 0.7959 10 6 8.1685 -2.7941 0.1295 11 6 8.7988 -4.0279 -0.5502 12 7 7.7840 -4.5972 -1.4488 13 6 7.9386 -5.6977 -2.2113 14 8 7.0297 -6.0780 -2.9186 15 6 9.2430 -6.4520 -2.1898 16 16 9.1414 -7.8651 -3.3163 17 6 10.7519 -8.5459 -3.0993 18 1 11.4496 -8.0771 -2.4210 19 6 11.1239 -9.6854 -3.7991 20 7 10.2732 -10.2578 -4.6246 21 14 12.8311 -10.4076 -3.5685 22 1 13.5893 -9.5838 -2.5928 23 1 12.7159 -11.7978 -3.0593 24 1 13.5456 -10.4148 -4.8703 25 6 6.5714 -3.7613 -1.3825 26 7 2.1844 -1.1246 0.0005 27 1 -0.3633 0.0004 1.0276 28 1 -0.3633 0.8898 -0.5142 29 1 -0.3633 -0.8902 -0.5135 30 1 4.1152 -2.9794 0.0014 31 1 6.1033 -1.1818 0.8918 32 1 6.1040 -1.1821 -0.8882 33 1 8.4642 -2.7378 1.1772 34 1 8.4417 -1.8809 -0.3990 35 1 9.0805 -4.7630 0.2038 36 1 9.6766 -3.7300 -1.1236 37 1 10.0500 -5.7916 -2.5074 38 1 9.4408 -6.8072 -1.1785 39 1 10.5332 -11.0539 -5.1140 40 1 6.5774 -3.0201 -2.1816 41 1 5.6782 -4.3828 -1.4470 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098508708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:05:42 Heat of formation + Delta-G solvation = -5.782029 kcal Electronic energy + Delta-G solvation = -23599.092992 eV Core-core repulsion = 19958.867737 eV Total energy + Delta-G solvation = -3640.225255 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 342.093 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.24131 -41.03409 -39.06535 -37.25046 -34.60142 -33.91661 -32.37446 -30.88339 -30.54959 -29.97140 -27.73817 -26.72998 -24.66425 -23.80073 -22.02501 -20.83267 -20.71941 -19.77438 -19.57831 -18.18084 -17.84840 -17.68299 -16.89880 -16.83104 -16.56068 -16.34645 -15.84136 -15.58183 -15.09718 -15.05757 -14.60584 -14.36374 -14.11295 -13.87675 -13.57197 -13.48246 -13.43395 -13.17269 -13.10331 -12.92337 -12.75014 -12.61456 -12.52885 -12.33927 -12.25740 -11.90228 -11.71847 -11.66124 -11.17160 -11.00749 -10.68757 -10.42574 -10.29436 -9.72164 -9.21867 -8.69983 -8.36211 -6.15130 -0.27589 -0.03555 0.78770 1.23088 1.41089 1.44518 1.53437 1.56375 1.66355 1.69866 2.07262 2.25924 2.98242 3.18867 3.30071 3.40593 3.46782 3.68375 3.87833 4.14787 4.19445 4.29806 4.34296 4.35520 4.43078 4.46284 4.56233 4.60524 4.69135 4.70646 4.80701 4.83030 4.93500 5.05251 5.17284 5.25353 5.38034 5.40579 5.46403 6.04798 6.18499 6.35190 6.75738 7.05097 7.08849 8.73336 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.031769 B = 0.001726 C = 0.001657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.141271 B =16219.969036 C =16897.806695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.299 3.701 3 N -0.539 5.539 4 S 0.194 5.806 5 C 0.342 3.658 6 N -0.657 5.657 7 C 0.127 3.873 8 C -0.096 4.096 9 H 0.107 0.893 10 C -0.106 4.106 11 C 0.086 3.914 12 N -0.618 5.618 13 C 0.544 3.456 14 O -0.569 6.569 15 C -0.119 4.119 16 S -0.155 6.155 17 C -0.545 4.545 18 H 0.084 0.916 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 1.000 3.000 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.102 3.898 26 N -0.614 5.614 27 H 0.101 0.899 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.420 0.580 31 H 0.109 0.891 32 H 0.089 0.911 33 H 0.119 0.881 34 H 0.102 0.898 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.107 0.893 39 H 0.271 0.729 40 H 0.072 0.928 41 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.554 24.321 16.528 30.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.010 3.990 3 N -0.374 5.374 4 S 0.327 5.673 5 C -0.038 4.038 6 N -0.296 5.296 7 C 0.004 3.996 8 C -0.116 4.116 9 H 0.125 0.875 10 C -0.144 4.144 11 C -0.036 4.036 12 N -0.353 5.353 13 C 0.332 3.668 14 O -0.448 6.448 15 C -0.270 4.270 16 S 0.072 5.928 17 C -0.693 4.693 18 H 0.102 0.898 19 C -0.192 4.192 20 N -0.548 5.548 21 Si 0.822 3.178 22 H -0.178 1.178 23 H -0.199 1.199 24 H -0.200 1.200 25 C -0.021 4.021 26 N -0.351 5.351 27 H 0.119 0.881 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.259 0.741 31 H 0.127 0.873 32 H 0.107 0.893 33 H 0.137 0.863 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.424 24.825 15.338 30.666 hybrid contribution 1.061 -1.749 0.284 2.066 sum -8.363 23.076 15.623 29.095 Atomic orbital electron populations 1.20545 0.82028 1.05051 1.05175 1.23740 1.01101 0.81880 0.92288 1.77492 0.98310 1.26110 1.35517 1.84692 1.12808 0.97261 1.72524 1.25339 0.90268 0.96120 0.92053 1.44192 1.04040 1.05854 1.75467 1.21917 0.75250 0.97421 1.05014 1.22525 0.97151 0.95803 0.96085 0.87498 1.22674 0.90947 0.97065 1.03705 1.22431 0.91522 0.96761 0.92859 1.48422 1.17414 1.25719 1.43708 1.19792 0.88437 0.79829 0.78700 1.90698 1.43896 1.68100 1.42123 1.23300 0.98108 1.00636 1.04990 1.85624 1.21882 1.28958 1.56313 1.23225 0.99417 1.15480 1.31130 0.89790 1.26152 1.03076 0.96132 0.93837 1.70195 1.37396 1.20631 1.26613 0.84885 0.76363 0.78020 0.78552 1.17844 1.19947 1.19967 1.22522 0.87623 0.93522 0.98418 1.67411 1.03982 1.30661 1.33075 0.88057 0.88705 0.88739 0.74084 0.87323 0.89274 0.86255 0.87958 0.90285 0.90239 0.87506 0.87461 0.91983 0.90948 0.92186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.83 10.42 71.24 0.74 -0.09 16 2 C 0.30 6.00 7.56 139.40 1.05 7.05 16 3 N -0.54 -11.71 12.15 -60.45 -0.73 -12.44 16 4 S 0.19 3.21 23.17 -56.49 -1.31 1.90 16 5 C 0.34 5.77 8.57 178.85 1.53 7.30 16 6 N -0.66 -7.38 5.65 -348.70 -1.97 -9.35 16 7 C 0.13 0.72 5.19 86.38 0.45 1.17 16 8 C -0.10 -0.73 3.06 -9.32 -0.03 -0.76 16 9 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 10 C -0.11 -0.52 6.42 31.78 0.20 -0.32 16 11 C 0.09 1.20 6.48 86.73 0.56 1.76 16 12 N -0.62 -14.95 3.32 -811.35 -2.70 -17.65 16 13 C 0.54 20.18 7.87 87.66 0.69 20.87 16 14 O -0.57 -26.81 16.12 -3.04 -0.05 -26.86 16 15 C -0.12 -4.70 5.35 71.24 0.38 -4.32 16 16 S -0.15 -8.61 20.57 -56.49 -1.16 -9.77 16 17 C -0.54 -30.84 9.50 67.95 0.65 -30.19 16 18 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 19 C 0.01 0.72 5.49 84.86 0.47 1.18 16 20 N -0.91 -55.85 13.22 21.65 0.29 -55.56 16 21 Si 1.00 43.04 29.55 68.60 2.03 45.07 16 22 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 23 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 C 0.10 1.84 6.33 86.93 0.55 2.39 16 26 N -0.61 -12.90 10.61 -200.02 -2.12 -15.02 16 27 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.42 4.76 8.60 -92.71 -0.80 3.96 16 31 H 0.11 0.19 8.14 -2.38 -0.02 0.17 16 32 H 0.09 0.45 7.96 -2.39 -0.02 0.44 16 33 H 0.12 0.03 8.14 -2.39 -0.02 0.01 16 34 H 0.10 0.22 8.04 -2.39 -0.02 0.20 16 35 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 37 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 38 H 0.11 3.80 8.14 -2.40 -0.02 3.78 16 39 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 40 H 0.07 1.29 7.91 -2.39 -0.02 1.27 16 41 H 0.06 1.34 8.03 -2.39 -0.02 1.32 16 Total: -1.00 -84.77 375.99 -0.22 -84.99 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: 0.26 Total: 8.65 kcal Atomic # 6 Polarization: -1.21 SS G_CDS: 7.25 Total: 6.04 kcal Atomic # 7 Polarization: -102.79 SS G_CDS: -7.24 Total: -110.03 kcal Atomic # 8 Polarization: -26.81 SS G_CDS: -0.05 Total: -26.86 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 16 Polarization: -5.40 SS G_CDS: -2.47 Total: -7.87 kcal Total: -84.77 -0.22 -84.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098508708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.210 kcal (2) G-P(sol) polarization free energy of solvation -84.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds