Wall clock time and date at job start Wed Apr 1 2020 01:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.87366 * 2 1 4 4 C 1.54316 * 110.00946 * 121.10405 * 2 1 3 5 5 C 1.55156 * 102.94092 * 141.68345 * 4 2 1 6 6 H 1.09003 * 111.00869 * 82.60967 * 5 4 2 7 7 N 1.46506 * 111.00487 * 206.42028 * 5 4 2 8 8 C 1.36934 * 120.00270 * 204.99890 * 7 5 4 9 9 H 1.07997 * 119.99625 * 359.97438 * 8 7 5 10 10 C 1.38807 * 120.00060 * 179.97438 * 8 7 5 11 11 N 1.31616 * 120.00248 * 179.97438 * 10 8 7 12 12 Si 1.86806 * 120.00210 * 0.02562 * 10 8 7 13 13 H 1.48496 * 109.46983 * 89.99582 * 12 10 8 14 14 H 1.48495 * 109.47002 * 210.00141 * 12 10 8 15 15 H 1.48501 * 109.46723 * 329.99958 * 12 10 8 16 16 C 1.55132 * 101.48567 * 324.32835 * 5 4 2 17 17 N 1.47017 * 109.88083 * 238.98786 * 2 1 3 18 18 C 1.34785 * 125.64966 * 61.44880 * 17 2 1 19 19 O 1.21284 * 119.99778 * 0.02562 * 18 17 2 20 20 C 1.50700 * 119.99900 * 179.97438 * 18 17 2 21 21 C 1.53003 * 109.46801 * 180.02562 * 20 18 17 22 22 C 1.50700 * 109.46801 * 180.02562 * 21 20 18 23 23 C 1.33400 * 125.19524 * 90.00632 * 22 21 20 24 24 C 1.38485 * 114.91011 * 179.97438 * 23 22 21 25 25 Cl 1.73602 * 122.54665 * 179.97438 * 24 23 22 26 26 C 1.33439 * 114.90128 * 359.97438 * 24 23 22 27 27 S 1.75877 * 125.19614 * 269.97458 * 22 21 20 28 28 H 1.09000 * 109.47240 * 179.56037 * 1 2 3 29 29 H 1.09003 * 109.47219 * 299.56097 * 1 2 3 30 30 H 1.08998 * 109.47448 * 59.56058 * 1 2 3 31 31 H 1.09006 * 110.72141 * 260.04473 * 4 2 1 32 32 H 1.08997 * 110.72666 * 23.13874 * 4 2 1 33 33 H 0.97004 * 119.99317 * 24.99611 * 7 5 4 34 34 H 0.97003 * 120.00568 * 180.02562 * 11 10 8 35 35 H 1.09001 * 110.49511 * 278.45822 * 16 5 4 36 36 H 1.08994 * 110.34310 * 156.06112 * 16 5 4 37 37 H 1.08998 * 109.47385 * 60.00388 * 20 18 17 38 38 H 1.08999 * 109.47352 * 300.00283 * 20 18 17 39 39 H 1.08998 * 109.46869 * 60.00029 * 21 20 18 40 40 H 1.08999 * 109.47364 * 300.00233 * 21 20 18 41 41 H 1.07997 * 122.54677 * 0.23791 * 23 22 21 42 42 H 1.07995 * 125.20132 * 179.97438 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0580 -0.7491 1.2415 5 6 3.2918 -1.5108 0.6892 6 1 4.1683 -0.8637 0.6570 7 7 3.5610 -2.7160 1.4774 8 6 4.8254 -3.2402 1.5166 9 1 5.6241 -2.7654 0.9661 10 6 5.0806 -4.3818 2.2639 11 7 6.2958 -4.8859 2.3012 12 14 3.6990 -5.2034 3.2155 13 1 3.0384 -6.2162 2.3536 14 1 4.2554 -5.8671 4.4218 15 1 2.7050 -4.1800 3.6276 16 6 2.8129 -1.8793 -0.7396 17 7 2.0300 -0.7123 -1.1849 18 6 1.8048 -0.3601 -2.4663 19 8 1.1385 0.6218 -2.7172 20 6 2.3820 -1.1857 -3.5872 21 6 1.9806 -0.5732 -4.9306 22 6 2.5573 -1.3991 -6.0515 23 6 1.9508 -2.4344 -6.6343 24 6 2.6762 -3.0416 -7.6457 25 17 2.0761 -4.4058 -8.5360 26 6 3.8715 -2.4983 -7.8838 27 16 4.1324 -1.1447 -6.7915 28 1 -0.3634 -1.0276 -0.0079 29 1 -0.3634 0.5070 0.8939 30 1 -0.3634 0.5206 -0.8860 31 1 2.3556 -0.0453 2.0190 32 1 1.3092 -1.4450 1.6196 33 1 2.8435 -3.1426 1.9716 34 1 6.4741 -5.6839 2.8231 35 1 2.1851 -2.7700 -0.7139 36 1 3.6680 -2.0358 -1.3972 37 1 1.9989 -2.2041 -3.5229 38 1 3.4688 -1.2005 -3.5052 39 1 2.3641 0.4451 -4.9946 40 1 0.8939 -0.5580 -5.0128 41 1 0.9668 -2.7708 -6.3427 42 1 4.5720 -2.8384 -8.6321 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000989496821.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:23:43 Heat of formation + Delta-G solvation = -1.533142 kcal Electronic energy + Delta-G solvation = -24549.896828 eV Core-core repulsion = 20875.519361 eV Total energy + Delta-G solvation = -3674.377467 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 342.091 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.13762 -38.61979 -37.63674 -36.46183 -34.42219 -33.79834 -31.80939 -31.55156 -29.11420 -28.84633 -25.67028 -25.46187 -23.71591 -22.92542 -21.27835 -20.48770 -19.66169 -18.69564 -17.91742 -17.69381 -16.81140 -16.22881 -16.09883 -15.45078 -14.97892 -14.37189 -14.12428 -13.88017 -13.72996 -13.58461 -13.39778 -13.22380 -12.85931 -12.76878 -12.66809 -12.45375 -12.35793 -12.22508 -11.88700 -11.50455 -11.45731 -11.42989 -11.29160 -11.20407 -10.93028 -10.88020 -10.73442 -10.44005 -10.14623 -9.76325 -9.70790 -9.11095 -9.02124 -8.67872 -8.47342 -7.45983 -5.89914 -3.28488 0.53618 1.01111 1.41932 2.16928 2.31223 2.71626 3.09695 3.28773 3.31350 3.37972 4.29117 4.47209 4.60566 4.78018 4.80433 4.85511 4.96054 5.02721 5.08516 5.16388 5.32043 5.35799 5.44580 5.46772 5.51349 5.62404 5.66482 5.67523 5.77195 5.83855 5.87044 5.94676 5.96747 6.02289 6.18607 6.29513 6.32856 6.53633 6.65273 7.69006 7.83742 8.25478 8.28655 9.04778 9.76949 9.94708 11.27562 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.009757 B = 0.002742 C = 0.002349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2869.007979 B =10208.962071 C =11918.617632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.138 3.862 3 H 0.073 0.927 4 C -0.142 4.142 5 C 0.178 3.822 6 H 0.077 0.923 7 N -0.735 5.735 8 C -0.255 4.255 9 H 0.093 0.907 10 C 0.011 3.989 11 N -0.928 5.928 12 Si 0.883 3.117 13 H -0.283 1.283 14 H -0.290 1.290 15 H -0.276 1.276 16 C 0.072 3.928 17 N -0.610 5.610 18 C 0.529 3.471 19 O -0.552 6.552 20 C -0.134 4.134 21 C -0.032 4.032 22 C -0.160 4.160 23 C -0.136 4.136 24 C -0.041 4.041 25 Cl -0.054 7.054 26 C -0.217 4.217 27 S 0.150 5.850 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.364 0.636 34 H 0.261 0.739 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.093 0.907 41 H 0.150 0.850 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.204 7.625 -17.778 21.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.035 3.965 3 H 0.091 0.909 4 C -0.180 4.180 5 C 0.066 3.934 6 H 0.095 0.905 7 N -0.377 5.377 8 C -0.385 4.385 9 H 0.110 0.890 10 C -0.186 4.186 11 N -0.574 5.574 12 Si 0.713 3.287 13 H -0.209 1.209 14 H -0.216 1.216 15 H -0.202 1.202 16 C -0.054 4.054 17 N -0.343 5.343 18 C 0.318 3.682 19 O -0.431 6.431 20 C -0.174 4.174 21 C -0.072 4.072 22 C -0.278 4.278 23 C -0.166 4.166 24 C -0.081 4.081 25 Cl -0.026 7.026 26 C -0.354 4.354 27 S 0.413 5.587 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.093 0.907 33 H 0.198 0.802 34 H 0.072 0.928 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.116 0.884 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.111 0.889 41 H 0.168 0.832 42 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.145 8.990 -17.851 21.583 hybrid contribution -1.952 -2.139 0.358 2.918 sum -10.097 6.851 -17.493 21.328 Atomic orbital electron populations 1.22128 0.95144 1.02085 1.02506 1.21495 0.94218 0.96224 0.84601 0.90862 1.23083 0.98995 0.99833 0.96137 1.21297 0.95039 0.88751 0.88285 0.90490 1.42668 1.09191 1.29298 1.56503 1.19067 0.85807 1.07500 1.26118 0.88967 1.24682 0.96112 0.97973 0.99820 1.69693 1.18920 1.24007 1.44816 0.86581 0.82242 0.79699 0.80172 1.20931 1.21590 1.20206 1.23484 0.94684 0.87455 0.99762 1.48639 1.52072 1.28945 1.04664 1.20180 0.80339 0.85110 0.82571 1.90662 1.40752 1.28161 1.83566 1.21671 1.03052 1.00590 0.92112 1.19906 1.01678 0.97437 0.88166 1.24489 0.98240 1.01657 1.03365 1.19865 1.02456 0.97019 0.97278 1.19775 0.95235 0.94517 0.98552 1.98370 1.87902 1.42247 1.74099 1.25567 1.00649 1.02397 1.06760 1.84510 1.16168 1.29129 1.28905 0.92683 0.91938 0.91469 0.90076 0.90675 0.80221 0.92841 0.91340 0.90697 0.88431 0.88488 0.89568 0.88860 0.83246 0.80920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.11 37.16 0.34 -1.65 16 2 C 0.14 1.85 3.45 -66.96 -0.23 1.62 16 3 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 4 C -0.14 -1.98 6.12 -24.90 -0.15 -2.13 16 5 C 0.18 3.03 3.73 -65.66 -0.24 2.78 16 6 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 7 N -0.74 -15.69 5.04 -51.23 -0.26 -15.95 16 8 C -0.26 -6.65 10.44 -15.06 -0.16 -6.81 16 9 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 10 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 11 N -0.93 -27.79 13.97 55.49 0.78 -27.02 16 12 Si 0.88 20.83 27.74 -169.99 -4.71 16.12 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.28 -6.07 6.52 56.52 0.37 -5.70 16 16 C 0.07 1.09 6.39 -2.41 -0.02 1.07 16 17 N -0.61 -8.54 3.06 -162.89 -0.50 -9.04 16 18 C 0.53 7.30 7.64 -10.98 -0.08 7.22 16 19 O -0.55 -8.90 15.01 5.55 0.08 -8.82 16 20 C -0.13 -1.45 4.68 -27.88 -0.13 -1.59 16 21 C -0.03 -0.32 5.00 -27.88 -0.14 -0.46 16 22 C -0.16 -1.52 5.76 -36.00 -0.21 -1.73 16 23 C -0.14 -1.31 9.94 -41.18 -0.41 -1.72 16 24 C -0.04 -0.40 6.27 -41.17 -0.26 -0.66 16 25 Cl -0.05 -0.52 29.11 -51.86 -1.51 -2.03 16 26 C -0.22 -1.91 11.08 29.05 0.32 -1.59 16 27 S 0.15 1.31 23.33 -107.50 -2.51 -1.19 16 28 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.92 6.87 -51.93 -0.36 0.56 16 31 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.07 1.04 7.72 -51.93 -0.40 0.64 16 33 H 0.36 7.67 5.63 -40.82 -0.23 7.44 16 34 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.07 1.11 7.48 -51.93 -0.39 0.73 16 37 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.10 1.01 7.85 -51.93 -0.41 0.61 16 39 H 0.09 0.87 8.10 -51.93 -0.42 0.45 16 40 H 0.09 0.92 8.10 -51.93 -0.42 0.50 16 41 H 0.15 1.29 8.06 -52.49 -0.42 0.86 16 42 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -30.07 374.29 -10.47 -40.55 By element: Atomic # 1 Polarization: 13.18 SS G_CDS: -6.02 Total: 7.17 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: -1.47 Total: -5.43 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.02 Total: -52.01 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.71 Total: 16.12 kcal Atomic # 16 Polarization: 1.31 SS G_CDS: -2.51 Total: -1.19 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.51 Total: -2.03 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -30.07 -10.47 -40.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000989496821.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.014 kcal (2) G-P(sol) polarization free energy of solvation -30.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds