Wall clock time and date at job start Wed Apr 1 2020 01:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.35367 * 117.00173 * 2 1 4 4 C 1.36094 * 125.58401 * 180.02562 * 3 2 1 5 5 C 1.39904 * 107.18343 * 180.02562 * 4 3 2 6 6 C 1.37834 * 106.67452 * 359.97438 * 5 4 3 7 7 C 1.46135 * 126.03068 * 180.02562 * 6 5 4 8 8 O 1.21766 * 119.99953 * 359.97438 * 7 6 5 9 9 N 1.34769 * 119.99619 * 180.02562 * 7 6 5 10 10 C 1.46505 * 119.99686 * 180.02562 * 9 7 6 11 11 H 1.09002 * 109.47068 * 324.99893 * 10 9 7 12 12 C 1.53002 * 109.47411 * 84.99974 * 10 9 7 13 13 C 1.52997 * 109.47212 * 204.99833 * 10 9 7 14 14 N 1.46500 * 109.47170 * 54.99826 * 13 10 9 15 15 C 1.34777 * 120.00168 * 180.02562 * 14 13 10 16 16 O 1.21278 * 119.99916 * 359.97438 * 15 14 13 17 17 C 1.50698 * 119.99931 * 180.02562 * 15 14 13 18 18 S 1.81002 * 109.47028 * 179.97438 * 17 15 14 19 19 C 1.76198 * 100.00098 * 179.97438 * 18 17 15 20 20 H 1.08007 * 119.99909 * 0.02562 * 19 18 17 21 21 C 1.38805 * 120.00376 * 180.02562 * 19 18 17 22 22 N 1.31632 * 119.99430 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00194 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47043 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47236 * 119.99796 * 23 21 19 26 26 H 1.48502 * 109.47137 * 239.99721 * 23 21 19 27 27 O 1.34014 * 125.57879 * 0.31447 * 3 2 1 28 28 H 1.09008 * 109.47106 * 60.00110 * 1 2 3 29 29 H 1.08994 * 109.47510 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47339 * 300.00137 * 1 2 3 31 31 H 1.08007 * 126.40637 * 0.02562 * 4 3 2 32 32 H 1.07997 * 126.66846 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00680 * 359.97438 * 9 7 6 34 34 H 1.09000 * 109.46986 * 300.00092 * 12 10 9 35 35 H 1.09002 * 109.47075 * 59.99363 * 12 10 9 36 36 H 1.08996 * 109.47407 * 180.02562 * 12 10 9 37 37 H 1.08998 * 109.47192 * 174.99746 * 13 10 9 38 38 H 1.09000 * 109.47325 * 294.99862 * 13 10 9 39 39 H 0.97004 * 120.00188 * 0.02562 * 14 13 10 40 40 H 1.09002 * 109.47475 * 299.99556 * 17 15 14 41 41 H 1.09001 * 109.47706 * 59.99630 * 17 15 14 42 42 H 0.97003 * 119.99249 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0435 1.2061 0.0000 4 6 3.3892 1.4092 -0.0005 5 6 3.5984 2.7925 0.0003 6 6 2.3521 3.3810 0.0007 7 6 2.0794 4.8167 0.0010 8 8 3.0018 5.6116 0.0014 9 7 0.8070 5.2608 0.0018 10 6 0.5335 6.7001 0.0016 11 1 1.2932 7.2144 0.5903 12 6 0.5607 7.2242 -1.4356 13 6 -0.8455 6.9574 0.6122 14 7 -0.9108 6.3506 1.9440 15 6 -2.0385 6.4502 2.6754 16 8 -2.9991 7.0425 2.2311 17 6 -2.1054 5.8265 4.0456 18 16 -3.7370 6.1307 4.7679 19 6 -3.5418 5.3167 6.3184 20 1 -2.6074 4.8317 6.5598 21 6 -4.5888 5.2986 7.2295 22 7 -5.7274 5.8902 6.9354 23 14 -4.3816 4.4362 8.8734 24 1 -3.0178 3.8550 8.9591 25 1 -4.5729 5.4152 9.9735 26 1 -5.3896 3.3525 8.9944 27 8 1.4264 2.3957 0.0060 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 4.1528 0.6453 -0.0013 32 1 4.5514 3.3006 -0.0002 33 1 0.0721 4.6276 0.0019 34 1 1.5432 7.0410 -1.8706 35 1 -0.1989 6.7099 -2.0243 36 1 0.3578 8.2951 -1.4358 37 1 -1.0121 8.0315 0.6937 38 1 -1.6128 6.5181 -0.0252 39 1 -0.1424 5.8772 2.2995 40 1 -1.9382 4.7524 3.9646 41 1 -1.3385 6.2665 4.6830 42 1 -6.4592 5.8772 7.5720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001688123700.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:40:34 Heat of formation + Delta-G solvation = -98.072469 kcal Electronic energy + Delta-G solvation = -26614.993653 eV Core-core repulsion = 22495.720762 eV Total energy + Delta-G solvation = -4119.272891 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.113 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.15520 -40.20517 -39.17757 -38.86761 -36.59563 -33.89734 -33.51148 -32.45992 -31.77237 -29.82596 -29.37704 -27.60629 -26.06908 -25.41822 -23.74313 -22.42414 -21.48395 -20.75613 -20.40043 -19.37869 -18.31654 -17.80038 -17.49951 -16.85879 -16.31921 -16.03232 -15.83708 -15.62686 -15.14056 -14.85504 -14.83361 -14.56789 -14.09320 -13.73823 -13.66738 -13.41678 -13.32905 -13.11978 -12.95722 -12.91429 -12.62143 -12.58761 -12.28167 -12.01706 -11.85404 -11.34980 -11.09547 -11.05170 -10.78459 -10.62792 -10.44737 -9.84414 -9.63676 -9.46587 -9.11334 -9.00440 -8.50588 -8.27473 -6.53837 -6.25107 -3.95796 0.64568 1.76924 1.94977 2.56475 2.81492 2.83686 2.98678 3.03251 3.19235 3.25909 3.30444 3.65735 4.17224 4.28231 4.36046 4.48412 4.59889 4.66189 4.76932 4.88759 4.91637 5.09428 5.10069 5.10332 5.20172 5.29593 5.34656 5.41770 5.47843 5.60869 5.70571 5.83628 5.86223 5.86915 5.98063 6.09458 6.11294 6.48793 6.64830 7.05780 7.56679 7.59798 7.70572 8.32294 8.52278 9.20561 10.82365 Molecular weight = 342.11amu Principal moments of inertia in cm(-1) A = 0.009609 B = 0.002628 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2913.329146 B =10651.434759 C =12629.025744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.261 6.261 3 C 0.221 3.779 4 C -0.244 4.244 5 C -0.077 4.077 6 C -0.108 4.108 7 C 0.612 3.388 8 O -0.520 6.520 9 N -0.718 5.718 10 C 0.131 3.869 11 H 0.100 0.900 12 C -0.161 4.161 13 C 0.113 3.887 14 N -0.740 5.740 15 C 0.532 3.468 16 O -0.515 6.515 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.279 1.279 26 H -0.280 1.280 27 O -0.189 6.189 28 H 0.064 0.936 29 H 0.113 0.887 30 H 0.068 0.932 31 H 0.164 0.836 32 H 0.168 0.832 33 H 0.407 0.593 34 H 0.067 0.933 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.073 0.927 39 H 0.399 0.601 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.294 -8.368 -18.226 26.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.175 6.175 3 C 0.124 3.876 4 C -0.264 4.264 5 C -0.097 4.097 6 C -0.159 4.159 7 C 0.399 3.601 8 O -0.398 6.398 9 N -0.370 5.370 10 C 0.027 3.973 11 H 0.118 0.882 12 C -0.220 4.220 13 C -0.012 4.012 14 N -0.396 5.396 15 C 0.319 3.681 16 O -0.389 6.389 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.136 4.136 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.205 1.205 26 H -0.206 1.206 27 O -0.089 6.089 28 H 0.083 0.917 29 H 0.131 0.869 30 H 0.087 0.913 31 H 0.182 0.818 32 H 0.186 0.814 33 H 0.242 0.758 34 H 0.086 0.914 35 H 0.081 0.919 36 H 0.092 0.908 37 H 0.103 0.897 38 H 0.092 0.908 39 H 0.233 0.767 40 H 0.107 0.893 41 H 0.108 0.892 42 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 15.892 -6.857 -18.912 25.636 hybrid contribution 1.005 -1.924 1.747 2.786 sum 16.897 -8.780 -17.165 25.636 Atomic orbital electron populations 1.23236 0.76089 1.05346 1.03010 1.86420 1.23542 1.18654 1.88895 1.20854 0.89569 0.78225 0.98953 1.20803 0.92132 0.96968 1.16458 1.22003 0.97815 0.92558 0.97340 1.21854 0.87087 0.87291 1.19625 1.16305 0.83374 0.83950 0.76475 1.90918 1.44193 1.53695 1.50997 1.46024 1.07490 1.08605 1.74904 1.21340 0.97417 0.80467 0.98082 0.88203 1.22117 1.03028 1.01908 0.94946 1.21622 0.95414 1.00043 0.84094 1.46012 1.16747 1.59151 1.17684 1.20319 0.81883 0.79483 0.86453 1.90710 1.35555 1.41092 1.71586 1.23534 1.08193 1.03237 0.95491 1.85387 1.07517 1.73209 1.17173 1.22909 1.02718 1.40537 1.02212 0.90886 1.24997 0.94456 0.95373 0.98763 1.70029 1.03267 1.41099 1.35866 0.86113 0.78328 0.79078 0.81964 1.19612 1.20519 1.20556 1.83962 1.37682 1.14308 1.72952 0.91677 0.86922 0.91331 0.81800 0.81443 0.75798 0.91443 0.91931 0.90773 0.89671 0.90847 0.76712 0.89320 0.89174 0.92215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.74 101.05 1.09 1.18 16 2 O -0.26 -2.15 10.55 -41.02 -0.43 -2.58 16 3 C 0.22 2.02 7.86 29.96 0.24 2.26 16 4 C -0.24 -2.04 10.89 -39.73 -0.43 -2.47 16 5 C -0.08 -0.69 10.66 -39.11 -0.42 -1.10 16 6 C -0.11 -1.08 7.16 -36.56 -0.26 -1.34 16 7 C 0.61 6.46 7.73 -13.10 -0.10 6.35 16 8 O -0.52 -6.81 16.53 5.13 0.08 -6.73 16 9 N -0.72 -6.24 4.51 -55.28 -0.25 -6.49 16 10 C 0.13 1.12 2.73 -67.93 -0.19 0.94 16 11 H 0.10 0.95 7.57 -51.93 -0.39 0.55 16 12 C -0.16 -1.19 9.48 37.16 0.35 -0.84 16 13 C 0.11 1.16 5.23 -4.04 -0.02 1.14 16 14 N -0.74 -9.29 5.39 -60.30 -0.32 -9.62 16 15 C 0.53 9.53 7.85 -10.99 -0.09 9.44 16 16 O -0.52 -11.24 15.86 5.56 0.09 -11.15 16 17 C -0.15 -3.04 6.16 36.00 0.22 -2.82 16 18 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 19 C -0.54 -15.12 9.50 30.94 0.29 -14.83 16 20 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -25.93 13.22 55.49 0.73 -25.20 16 23 Si 0.92 21.24 29.55 -169.99 -5.02 16.22 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 O -0.19 -1.79 9.88 -19.27 -0.19 -1.98 16 28 H 0.06 0.32 8.14 -51.92 -0.42 -0.10 16 29 H 0.11 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 32 H 0.17 1.26 8.06 -52.49 -0.42 0.83 16 33 H 0.41 3.19 8.35 -40.82 -0.34 2.85 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 39 H 0.40 4.29 8.14 -40.82 -0.33 3.96 16 40 H 0.09 1.61 8.14 -51.92 -0.42 1.19 16 41 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 42 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 386.58 15.07 5.83 5.83 Total: -1.00 -35.69 386.58 -6.80 -42.49 By element: Atomic # 1 Polarization: 8.79 SS G_CDS: -5.68 Total: 3.11 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 0.59 Total: -0.11 kcal Atomic # 7 Polarization: -41.46 SS G_CDS: 0.16 Total: -41.30 kcal Atomic # 8 Polarization: -21.98 SS G_CDS: -0.45 Total: -22.43 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.69 -6.80 -42.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001688123700.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.582 kcal (2) G-P(sol) polarization free energy of solvation -35.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds