Wall clock time and date at job start Wed Apr 1 2020 01:39:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47234 * 2 1 4 4 C 1.53000 * 109.47272 * 240.00314 * 2 1 3 5 5 N 1.46501 * 109.47335 * 184.99861 * 4 2 1 6 6 C 1.46496 * 119.99948 * 269.99513 * 5 4 2 7 7 C 1.36931 * 119.99987 * 89.99967 * 5 4 2 8 8 H 1.08005 * 120.00190 * 341.44049 * 7 5 4 9 9 C 1.38812 * 119.99973 * 161.43723 * 7 5 4 10 10 N 1.31616 * 120.00204 * 346.77672 * 9 7 5 11 11 Si 1.86809 * 119.99979 * 166.50008 * 9 7 5 12 12 H 1.48498 * 109.46980 * 59.99812 * 11 9 7 13 13 H 1.48501 * 109.46803 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47060 * 299.99964 * 11 9 7 15 15 N 1.46495 * 109.47491 * 120.00145 * 2 1 3 16 16 C 1.34776 * 120.00078 * 275.00028 * 15 2 1 17 17 O 1.21277 * 120.00076 * 359.97438 * 16 15 2 18 18 C 1.50709 * 120.00058 * 179.97438 * 16 15 2 19 19 H 1.08993 * 115.54588 * 34.32860 * 18 16 15 20 20 C 1.52999 * 117.49595 * 248.61963 * 18 16 15 21 21 C 1.53002 * 60.00158 * 252.51240 * 20 18 16 22 22 H 1.08994 * 117.49699 * 107.49533 * 21 20 18 23 23 C 1.50697 * 117.49862 * 252.51467 * 21 20 18 24 24 C 1.33346 * 125.18924 * 188.34448 * 23 21 20 25 25 C 1.38475 * 114.93075 * 179.79312 * 24 23 21 26 26 C 1.33500 * 114.88067 * 0.49759 * 25 24 23 27 27 Cl 1.73601 * 125.20860 * 179.71587 * 26 25 24 28 28 S 1.75876 * 109.58421 * 359.73239 * 26 25 24 29 29 H 1.08994 * 109.47152 * 59.99717 * 1 2 3 30 30 H 1.09000 * 109.46766 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46790 * 299.99356 * 1 2 3 32 32 H 1.08998 * 109.47289 * 64.99390 * 4 2 1 33 33 H 1.09007 * 109.47039 * 304.99866 * 4 2 1 34 34 H 1.08997 * 109.47453 * 264.86951 * 6 5 4 35 35 H 1.09004 * 109.46994 * 24.86559 * 6 5 4 36 36 H 1.08998 * 109.47212 * 144.86450 * 6 5 4 37 37 H 0.96998 * 120.00139 * 180.02562 * 10 9 7 38 38 H 0.97002 * 120.00021 * 94.99777 * 15 2 1 39 39 H 1.09003 * 117.50357 * 0.02562 * 20 18 16 40 40 H 1.09001 * 117.49600 * 145.02240 * 20 18 16 41 41 H 1.07997 * 122.53353 * 359.97182 * 24 23 21 42 42 H 1.08000 * 122.55785 * 180.23043 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2341 -1.7614 7 6 4.0850 -1.9157 -0.6024 8 1 3.5136 -2.5380 0.0705 9 6 5.4123 -2.2205 -0.8711 10 7 6.0321 -1.6348 -1.8736 11 14 6.3212 -3.4562 0.1950 12 1 5.6310 -4.7694 0.1287 13 1 7.7145 -3.6043 -0.2971 14 1 6.3404 -2.9776 1.6006 15 7 2.0184 -0.6906 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8591 1.1585 2.4115 18 6 2.6490 -0.7289 3.5877 19 1 3.3931 -1.5056 3.4113 20 6 1.6566 -0.9471 4.7315 21 6 2.7731 0.0893 4.8746 22 1 2.4916 1.1414 4.8313 23 6 3.9143 -0.2409 5.8017 24 6 4.8802 0.6044 6.1629 25 6 5.8227 0.0778 7.0300 26 6 5.6266 -1.1997 7.3643 27 17 6.6443 -2.1247 8.4238 28 16 4.1795 -1.8023 6.5667 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7516 -0.1583 -2.1370 33 1 1.6054 -1.7198 -1.2952 34 1 4.6179 -0.0347 -2.7789 35 1 3.7742 1.1691 -1.7754 36 1 5.2313 0.3570 -1.1545 37 1 6.9595 -1.8480 -2.0616 38 1 2.2491 -1.6318 1.1525 39 1 0.6406 -0.5771 4.5939 40 1 1.7476 -1.8677 5.3080 41 1 4.9226 1.6237 5.8083 42 1 6.6555 0.6551 7.4037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754323969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:26 Heat of formation + Delta-G solvation = 38.174325 kcal Electronic energy + Delta-G solvation = -25084.121331 eV Core-core repulsion = 21411.465709 eV Total energy + Delta-G solvation = -3672.655622 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 342.091 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.83296 -38.32696 -37.20608 -36.57941 -35.75916 -34.04043 -31.42682 -30.21877 -29.40373 -26.21829 -25.65341 -24.91023 -24.03349 -22.04635 -21.65472 -20.11499 -19.79376 -19.70917 -17.72208 -17.17934 -16.50139 -15.85409 -15.72657 -15.07479 -14.67247 -14.31738 -14.01734 -13.95013 -13.72319 -13.39717 -13.06082 -13.00189 -12.93972 -12.45632 -12.24142 -12.16754 -12.01763 -11.97466 -11.63816 -11.26081 -11.10312 -10.93053 -10.88106 -10.85234 -10.63338 -10.59141 -10.42703 -10.30937 -10.05638 -9.89612 -9.44190 -8.73404 -8.58231 -8.57866 -8.45505 -6.82732 -5.76525 -3.19938 0.57774 0.88971 1.61040 2.03171 2.37869 2.88065 3.33363 3.39180 3.41212 3.58303 3.87167 4.40720 4.44315 4.64051 4.80141 5.08566 5.12962 5.25221 5.27031 5.35023 5.45166 5.49480 5.59417 5.71287 5.78203 5.86998 5.91488 5.97113 5.97809 6.11778 6.15643 6.17729 6.42347 6.43932 6.74747 6.80479 7.10045 7.41229 7.62433 7.77672 8.09720 8.32194 8.72481 9.18138 9.82291 10.30628 11.28160 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.010204 B = 0.003580 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.408576 B = 7818.285634 C = 9751.014311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.117 3.883 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.600 5.600 6 C 0.165 3.835 7 C -0.252 4.252 8 H 0.066 0.934 9 C 0.004 3.996 10 N -0.905 5.905 11 Si 0.897 3.103 12 H -0.283 1.283 13 H -0.290 1.290 14 H -0.283 1.283 15 N -0.688 5.688 16 C 0.545 3.455 17 O -0.558 6.558 18 C -0.168 4.168 19 H 0.128 0.872 20 C -0.145 4.145 21 C -0.058 4.058 22 H 0.140 0.860 23 C -0.131 4.131 24 C -0.129 4.129 25 C -0.111 4.111 26 C -0.157 4.157 27 Cl -0.019 7.019 28 S 0.152 5.848 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.052 0.948 33 H 0.051 0.949 34 H 0.028 0.972 35 H -0.005 1.005 36 H 0.046 0.954 37 H 0.253 0.747 38 H 0.404 0.596 39 H 0.110 0.890 40 H 0.102 0.898 41 H 0.151 0.849 42 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.448 1.040 16.479 17.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.009 3.991 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.322 5.322 6 C 0.021 3.979 7 C -0.381 4.381 8 H 0.083 0.917 9 C -0.195 4.195 10 N -0.551 5.551 11 Si 0.727 3.273 12 H -0.209 1.209 13 H -0.216 1.216 14 H -0.210 1.210 15 N -0.337 5.337 16 C 0.330 3.670 17 O -0.438 6.438 18 C -0.190 4.190 19 H 0.146 0.854 20 C -0.183 4.183 21 C -0.079 4.079 22 H 0.157 0.843 23 C -0.249 4.249 24 C -0.159 4.159 25 C -0.144 4.144 26 C -0.301 4.301 27 Cl 0.009 6.991 28 S 0.415 5.585 29 H 0.079 0.921 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.070 0.930 33 H 0.070 0.930 34 H 0.046 0.954 35 H 0.014 0.986 36 H 0.064 0.936 37 H 0.063 0.937 38 H 0.240 0.760 39 H 0.129 0.871 40 H 0.120 0.880 41 H 0.169 0.831 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -7.073 0.357 16.489 17.946 hybrid contribution 1.851 0.065 0.611 1.950 sum -5.222 0.422 17.100 17.885 Atomic orbital electron populations 1.22121 0.96512 1.01439 1.01634 1.21902 0.92193 0.98324 0.86643 0.90476 1.21052 0.86074 0.98256 0.93329 1.43848 0.98873 1.21253 1.68273 1.20795 0.92966 0.86026 0.98132 1.18980 0.94845 1.04332 1.19990 0.91655 1.24910 0.98223 0.99009 0.97313 1.70072 1.11505 1.45350 1.28124 0.86454 0.79364 0.81140 0.80357 1.20903 1.21585 1.20961 1.45843 1.64907 1.14377 1.08583 1.19307 0.77346 0.86523 0.83811 1.90633 1.51934 1.15849 1.85346 1.22497 1.03968 1.03441 0.89084 0.85439 1.23109 0.95707 1.00079 0.99442 1.20476 0.93996 0.99249 0.94149 0.84253 1.23873 1.01007 0.96356 1.03635 1.19941 0.94155 1.01971 0.99828 1.20181 1.01414 0.93350 0.99411 1.25202 1.01405 0.97168 1.06282 1.98361 1.65637 1.72262 1.62801 1.84305 1.19566 1.12456 1.42207 0.92077 0.92859 0.92946 0.92957 0.93021 0.95408 0.98642 0.93554 0.93665 0.75963 0.87136 0.87971 0.83143 0.83345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.22 9.48 37.16 0.35 -1.86 16 2 C 0.12 2.02 2.88 -67.93 -0.20 1.82 16 3 H 0.08 1.52 7.58 -51.93 -0.39 1.13 16 4 C 0.14 2.68 5.30 -4.04 -0.02 2.65 16 5 N -0.60 -14.21 2.82 -181.12 -0.51 -14.72 16 6 C 0.17 4.05 8.96 59.84 0.54 4.59 16 7 C -0.25 -6.38 8.82 -15.06 -0.13 -6.51 16 8 H 0.07 1.54 6.35 -52.48 -0.33 1.21 16 9 C 0.00 0.11 5.11 -17.43 -0.09 0.02 16 10 N -0.91 -25.79 10.46 55.49 0.58 -25.21 16 11 Si 0.90 21.09 29.58 -169.99 -5.03 16.07 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 15 N -0.69 -11.83 4.49 -53.81 -0.24 -12.08 16 16 C 0.54 9.38 7.58 -10.98 -0.08 9.30 16 17 O -0.56 -11.05 15.92 5.56 0.09 -10.97 16 18 C -0.17 -2.36 5.89 -91.77 -0.54 -2.91 16 19 H 0.13 1.84 8.14 -51.93 -0.42 1.42 16 20 C -0.15 -1.59 9.75 -26.73 -0.26 -1.86 16 21 C -0.06 -0.73 5.73 -91.77 -0.53 -1.25 16 22 H 0.14 1.82 7.67 -51.93 -0.40 1.42 16 23 C -0.13 -1.59 6.14 -36.02 -0.22 -1.81 16 24 C -0.13 -1.49 10.05 -41.20 -0.41 -1.91 16 25 C -0.11 -1.22 10.13 -41.15 -0.42 -1.64 16 26 C -0.16 -1.81 7.10 29.07 0.21 -1.60 16 27 Cl -0.02 -0.20 29.29 -51.86 -1.52 -1.72 16 28 S 0.15 1.72 22.16 -107.50 -2.38 -0.67 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.05 0.93 8.07 -51.93 -0.42 0.51 16 33 H 0.05 0.95 8.04 -51.93 -0.42 0.53 16 34 H 0.03 0.73 7.46 -51.93 -0.39 0.34 16 35 H 0.00 -0.11 8.03 -51.93 -0.42 -0.53 16 36 H 0.05 1.24 7.04 -51.93 -0.37 0.88 16 37 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 38 H 0.40 6.83 6.56 -40.82 -0.27 6.56 16 39 H 0.11 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.10 0.96 7.27 -51.93 -0.38 0.59 16 41 H 0.15 1.54 8.06 -52.49 -0.42 1.12 16 42 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 378.14 15.07 5.70 5.70 Total: -1.00 -29.99 378.14 -10.99 -40.98 By element: Atomic # 1 Polarization: 11.46 SS G_CDS: -5.87 Total: 5.58 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -1.81 Total: -2.97 kcal Atomic # 7 Polarization: -51.84 SS G_CDS: -0.17 Total: -52.01 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: 0.09 Total: -10.97 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.07 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.38 Total: -0.67 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -1.52 Total: -1.72 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -29.99 -10.99 -40.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754323969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.157 kcal (2) G-P(sol) polarization free energy of solvation -29.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds