Wall clock time and date at job start Wed Apr 1 2020 01:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47234 * 2 1 4 4 C 1.53000 * 109.47272 * 240.00314 * 2 1 3 5 5 N 1.46501 * 109.47335 * 184.99861 * 4 2 1 6 6 C 1.46496 * 119.99948 * 269.99513 * 5 4 2 7 7 C 1.36931 * 119.99987 * 89.99967 * 5 4 2 8 8 H 1.08005 * 120.00190 * 341.44049 * 7 5 4 9 9 C 1.38812 * 119.99973 * 161.43723 * 7 5 4 10 10 N 1.31616 * 120.00204 * 346.77672 * 9 7 5 11 11 Si 1.86809 * 119.99979 * 166.50008 * 9 7 5 12 12 H 1.48498 * 109.46980 * 59.99812 * 11 9 7 13 13 H 1.48501 * 109.46803 * 179.97438 * 11 9 7 14 14 H 1.48496 * 109.47060 * 299.99964 * 11 9 7 15 15 N 1.46495 * 109.47491 * 120.00145 * 2 1 3 16 16 C 1.34776 * 120.00078 * 275.00028 * 15 2 1 17 17 O 1.21277 * 120.00076 * 359.97438 * 16 15 2 18 18 C 1.50709 * 120.00058 * 179.97438 * 16 15 2 19 19 H 1.08993 * 115.54588 * 34.32860 * 18 16 15 20 20 C 1.52999 * 117.49595 * 248.61963 * 18 16 15 21 21 C 1.53002 * 60.00158 * 252.51240 * 20 18 16 22 22 H 1.08994 * 117.49699 * 107.49533 * 21 20 18 23 23 C 1.50697 * 117.49862 * 252.51467 * 21 20 18 24 24 C 1.33346 * 125.18924 * 188.34448 * 23 21 20 25 25 C 1.38475 * 114.93075 * 179.79312 * 24 23 21 26 26 C 1.33500 * 114.88067 * 0.49759 * 25 24 23 27 27 Cl 1.73601 * 125.20860 * 179.71587 * 26 25 24 28 28 S 1.75876 * 109.58421 * 359.73239 * 26 25 24 29 29 H 1.08994 * 109.47152 * 59.99717 * 1 2 3 30 30 H 1.09000 * 109.46766 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46790 * 299.99356 * 1 2 3 32 32 H 1.08998 * 109.47289 * 64.99390 * 4 2 1 33 33 H 1.09007 * 109.47039 * 304.99866 * 4 2 1 34 34 H 1.08997 * 109.47453 * 264.86951 * 6 5 4 35 35 H 1.09004 * 109.46994 * 24.86559 * 6 5 4 36 36 H 1.08998 * 109.47212 * 144.86450 * 6 5 4 37 37 H 0.96998 * 120.00139 * 180.02562 * 10 9 7 38 38 H 0.97002 * 120.00021 * 94.99777 * 15 2 1 39 39 H 1.09003 * 117.50357 * 0.02562 * 20 18 16 40 40 H 1.09001 * 117.49600 * 145.02240 * 20 18 16 41 41 H 1.07997 * 122.53353 * 359.97182 * 24 23 21 42 42 H 1.08000 * 122.55785 * 180.23043 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 7 3.5001 -0.8263 -1.1906 6 6 4.3343 0.2341 -1.7614 7 6 4.0850 -1.9157 -0.6024 8 1 3.5136 -2.5380 0.0705 9 6 5.4123 -2.2205 -0.8711 10 7 6.0321 -1.6348 -1.8736 11 14 6.3212 -3.4562 0.1950 12 1 5.6310 -4.7694 0.1287 13 1 7.7145 -3.6043 -0.2971 14 1 6.3404 -2.9776 1.6006 15 7 2.0184 -0.6906 1.1961 16 6 2.1471 -0.0183 2.3571 17 8 1.8591 1.1585 2.4115 18 6 2.6490 -0.7289 3.5877 19 1 3.3931 -1.5056 3.4113 20 6 1.6566 -0.9471 4.7315 21 6 2.7731 0.0893 4.8746 22 1 2.4916 1.1414 4.8313 23 6 3.9143 -0.2409 5.8017 24 6 4.8802 0.6044 6.1629 25 6 5.8227 0.0778 7.0300 26 6 5.6266 -1.1997 7.3643 27 17 6.6443 -2.1247 8.4238 28 16 4.1795 -1.8023 6.5667 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7516 -0.1583 -2.1370 33 1 1.6054 -1.7198 -1.2952 34 1 4.6179 -0.0347 -2.7789 35 1 3.7742 1.1691 -1.7754 36 1 5.2313 0.3570 -1.1545 37 1 6.9595 -1.8480 -2.0616 38 1 2.2491 -1.6318 1.1525 39 1 0.6406 -0.5771 4.5939 40 1 1.7476 -1.8677 5.3080 41 1 4.9226 1.6237 5.8083 42 1 6.6555 0.6551 7.4037 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754323969.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:25 Heat of formation + Delta-G solvation = 22.818638 kcal Electronic energy + Delta-G solvation = -25084.787203 eV Core-core repulsion = 21411.465709 eV Total energy + Delta-G solvation = -3673.321495 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 342.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09480 -39.31685 -38.36665 -37.74466 -36.96023 -35.68748 -33.16593 -31.72404 -30.33372 -28.07108 -27.37016 -25.97738 -25.04690 -23.46997 -22.86593 -21.56907 -21.11402 -20.63588 -18.87398 -18.57926 -17.96219 -17.08566 -16.94176 -16.79957 -15.92870 -15.61401 -15.48145 -15.13081 -14.83144 -14.80205 -14.55606 -14.30427 -13.93642 -13.70138 -13.53702 -13.44068 -13.10174 -13.07808 -12.93955 -12.79989 -12.63369 -12.60459 -12.17669 -12.13415 -12.05998 -11.88325 -11.80203 -11.76751 -11.60727 -11.55935 -10.79623 -10.57505 -9.87250 -9.59378 -9.47993 -8.78057 -7.78366 -5.22329 -0.31720 0.02284 0.72583 1.17026 1.44883 1.46972 1.50350 1.54125 1.67413 2.34009 2.52407 2.83365 3.36556 3.41867 3.61259 3.70668 3.77458 4.05734 4.17223 4.23634 4.25027 4.42844 4.44060 4.52968 4.62881 4.77462 4.84399 4.84924 4.89142 4.90712 5.01395 5.01933 5.10645 5.18926 5.28795 5.33161 5.46295 5.61061 5.71502 5.76631 6.32717 6.73338 7.16566 7.38560 7.89747 8.34761 9.25848 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.010204 B = 0.003580 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2743.408576 B = 7818.285634 C = 9751.014311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.124 3.876 3 H 0.049 0.951 4 C 0.141 3.859 5 N -0.614 5.614 6 C 0.181 3.819 7 C -0.242 4.242 8 H 0.085 0.915 9 C -0.056 4.056 10 N -0.943 5.943 11 Si 0.954 3.046 12 H -0.269 1.269 13 H -0.305 1.305 14 H -0.279 1.279 15 N -0.690 5.690 16 C 0.541 3.459 17 O -0.589 6.589 18 C -0.185 4.185 19 H 0.124 0.876 20 C -0.117 4.117 21 C -0.057 4.057 22 H 0.131 0.869 23 C -0.146 4.146 24 C -0.135 4.135 25 C -0.114 4.114 26 C -0.169 4.169 27 Cl -0.013 7.013 28 S 0.162 5.838 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.064 0.936 34 H 0.004 0.996 35 H 0.019 0.981 36 H 0.014 0.986 37 H 0.243 0.757 38 H 0.406 0.594 39 H 0.120 0.880 40 H 0.122 0.878 41 H 0.159 0.841 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.949 0.080 17.999 19.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.017 3.983 3 H 0.068 0.932 4 C 0.014 3.986 5 N -0.337 5.337 6 C 0.035 3.965 7 C -0.372 4.372 8 H 0.103 0.897 9 C -0.250 4.250 10 N -0.591 5.591 11 Si 0.783 3.217 12 H -0.195 1.195 13 H -0.232 1.232 14 H -0.205 1.205 15 N -0.339 5.339 16 C 0.328 3.672 17 O -0.471 6.471 18 C -0.207 4.207 19 H 0.142 0.858 20 C -0.155 4.155 21 C -0.078 4.078 22 H 0.149 0.851 23 C -0.264 4.264 24 C -0.165 4.165 25 C -0.146 4.146 26 C -0.312 4.312 27 Cl 0.016 6.984 28 S 0.426 5.574 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.023 0.977 35 H 0.037 0.963 36 H 0.032 0.968 37 H 0.053 0.947 38 H 0.242 0.758 39 H 0.138 0.862 40 H 0.140 0.860 41 H 0.176 0.824 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -8.628 -0.625 18.027 19.995 hybrid contribution 2.265 0.415 0.151 2.307 sum -6.363 -0.210 18.178 19.261 Atomic orbital electron populations 1.22005 0.93530 1.02721 1.02227 1.21690 0.94366 0.96341 0.85928 0.93250 1.21252 0.83211 0.99424 0.94684 1.44081 1.00893 1.20619 1.68126 1.20485 0.92402 0.87429 0.96149 1.19455 0.94840 1.03920 1.19020 0.89740 1.25627 0.99451 1.01307 0.98658 1.70247 1.11128 1.47540 1.30153 0.85530 0.77493 0.79860 0.78833 1.19463 1.23170 1.20521 1.45892 1.64936 1.14408 1.08704 1.19781 0.76623 0.86223 0.84538 1.90613 1.53384 1.17195 1.85910 1.22379 1.05690 1.04049 0.88577 0.85768 1.23225 0.95398 1.00188 0.96657 1.20431 0.94992 0.99173 0.93163 0.85097 1.23923 1.01215 0.97109 1.04108 1.20173 0.94076 1.02474 0.99745 1.20390 1.01738 0.93399 0.99039 1.25382 1.01701 0.97569 1.06594 1.98362 1.65408 1.72091 1.62554 1.84165 1.19542 1.11796 1.41921 0.90324 0.91177 0.93537 0.91600 0.91753 0.97731 0.96282 0.96755 0.94722 0.75755 0.86185 0.86008 0.82355 0.81585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.72 9.48 71.98 0.68 -3.04 16 2 C 0.12 4.10 2.88 44.99 0.13 4.23 16 3 H 0.05 1.92 7.58 -2.38 -0.02 1.91 16 4 C 0.14 5.08 5.30 86.38 0.46 5.54 16 5 N -0.61 -28.75 2.82 -726.94 -2.05 -30.80 16 6 C 0.18 8.97 8.96 127.77 1.15 10.12 16 7 C -0.24 -12.07 8.82 84.03 0.74 -11.33 16 8 H 0.09 3.81 6.35 -2.91 -0.02 3.79 16 9 C -0.06 -3.01 5.11 84.86 0.43 -2.58 16 10 N -0.94 -55.00 10.46 21.65 0.23 -54.77 16 11 Si 0.95 43.39 29.58 68.60 2.03 45.42 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 14 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 15 N -0.69 -22.85 4.49 -442.54 -1.99 -24.84 16 16 C 0.54 18.20 7.58 87.66 0.66 18.86 16 17 O -0.59 -23.20 15.92 -3.02 -0.05 -23.25 16 18 C -0.19 -4.97 5.89 -11.54 -0.07 -5.04 16 19 H 0.12 3.42 8.14 -2.39 -0.02 3.40 16 20 C -0.12 -2.30 9.75 30.59 0.30 -2.00 16 21 C -0.06 -1.36 5.73 -11.54 -0.07 -1.42 16 22 H 0.13 3.35 7.67 -2.39 -0.02 3.33 16 23 C -0.15 -3.33 6.14 24.58 0.15 -3.18 16 24 C -0.13 -2.95 10.05 21.22 0.21 -2.74 16 25 C -0.11 -2.31 10.13 21.25 0.22 -2.10 16 26 C -0.17 -3.62 7.10 66.75 0.47 -3.14 16 27 Cl -0.01 -0.25 29.29 -2.72 -0.08 -0.33 16 28 S 0.16 3.39 22.16 -56.49 -1.25 2.14 16 29 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 30 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.07 2.20 8.07 -2.39 -0.02 2.18 16 33 H 0.06 2.18 8.04 -2.38 -0.02 2.16 16 34 H 0.00 0.24 7.46 -2.39 -0.02 0.22 16 35 H 0.02 0.82 8.03 -2.39 -0.02 0.81 16 36 H 0.01 0.76 7.04 -2.39 -0.02 0.75 16 37 H 0.24 14.08 8.31 -92.71 -0.77 13.31 16 38 H 0.41 13.01 6.56 -92.71 -0.61 12.40 16 39 H 0.12 2.17 8.14 -2.39 -0.02 2.15 16 40 H 0.12 1.93 7.27 -2.39 -0.02 1.91 16 41 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 42 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 Total: -1.00 -64.74 378.14 2.74 -62.00 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: 0.43 Total: 22.26 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: 5.47 Total: 2.18 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -3.81 Total: -110.41 kcal Atomic # 8 Polarization: -23.20 SS G_CDS: -0.05 Total: -23.25 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.42 kcal Atomic # 16 Polarization: 3.39 SS G_CDS: -1.25 Total: 2.14 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -0.08 Total: -0.33 kcal Total: -64.74 2.74 -62.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754323969.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.814 kcal (2) G-P(sol) polarization free energy of solvation -64.738 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds