Wall clock time and date at job start Wed Apr 1 2020 01:39:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46680 * 2 1 4 4 C 1.52995 * 109.47231 * 120.00193 * 2 1 3 5 5 N 1.46500 * 109.46956 * 175.00122 * 4 2 1 6 6 C 1.46496 * 119.99921 * 269.99741 * 5 4 2 7 7 C 1.36946 * 120.00081 * 90.00147 * 5 4 2 8 8 H 1.07994 * 119.99794 * 23.61280 * 7 5 4 9 9 C 1.38808 * 119.99501 * 203.61686 * 7 5 4 10 10 N 1.31614 * 120.00573 * 11.30754 * 9 7 5 11 11 Si 1.86811 * 119.99538 * 191.30691 * 9 7 5 12 12 H 1.48500 * 109.47000 * 89.99962 * 11 9 7 13 13 H 1.48502 * 109.47040 * 209.99982 * 11 9 7 14 14 H 1.48499 * 109.47129 * 330.00058 * 11 9 7 15 15 N 1.46501 * 109.46812 * 240.00530 * 2 1 3 16 16 C 1.34772 * 120.00299 * 85.00154 * 15 2 1 17 17 O 1.21285 * 119.99900 * 359.97438 * 16 15 2 18 18 C 1.50695 * 120.00221 * 180.02562 * 16 15 2 19 19 H 1.09000 * 115.55424 * 34.32041 * 18 16 15 20 20 C 1.53002 * 117.49749 * 248.61787 * 18 16 15 21 21 C 1.52995 * 59.99969 * 252.50830 * 20 18 16 22 22 H 1.09000 * 117.49785 * 107.49212 * 21 20 18 23 23 C 1.50710 * 117.49748 * 252.51121 * 21 20 18 24 24 C 1.33344 * 125.18532 * 188.34630 * 23 21 20 25 25 C 1.38474 * 114.92649 * 179.79642 * 24 23 21 26 26 C 1.33503 * 114.88132 * 0.48866 * 25 24 23 27 27 Cl 1.73604 * 125.20725 * 179.71393 * 26 25 24 28 28 S 1.75875 * 125.18823 * 8.64583 * 23 21 20 29 29 H 1.08998 * 109.47524 * 59.99750 * 1 2 3 30 30 H 1.08994 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46668 * 299.99760 * 1 2 3 32 32 H 1.09002 * 109.47100 * 294.99818 * 4 2 1 33 33 H 1.08994 * 109.47398 * 54.99767 * 4 2 1 34 34 H 1.09009 * 109.47068 * 94.54104 * 6 5 4 35 35 H 1.09003 * 109.47340 * 214.53260 * 6 5 4 36 36 H 1.08994 * 109.47578 * 334.53989 * 6 5 4 37 37 H 0.97006 * 120.00235 * 179.97438 * 10 9 7 38 38 H 0.96999 * 119.99502 * 264.99077 * 15 2 1 39 39 H 1.09000 * 117.50244 * 359.97438 * 20 18 16 40 40 H 1.09004 * 117.50010 * 145.01839 * 20 18 16 41 41 H 1.07998 * 122.53727 * 359.97043 * 24 23 21 42 42 H 1.08003 * 122.55926 * 180.23263 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1258 -1.9918 0.5611 7 6 4.2799 0.1649 1.7240 8 1 3.8834 0.8070 2.4965 9 6 5.5799 0.3443 1.2717 10 7 5.9919 -0.2794 0.1883 11 14 6.7449 1.4710 2.2008 12 1 7.4752 0.6880 3.2298 13 1 7.7175 2.0690 1.2512 14 1 5.9681 2.5515 2.8598 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8582 1.1586 -2.4116 18 6 2.6487 -0.7286 -3.5878 19 1 2.3509 -1.7729 -3.6821 20 6 4.0305 -0.3372 -4.1154 21 6 2.7727 0.0896 -4.8747 22 1 2.4913 1.1418 -4.8312 23 6 2.4741 -0.6102 -6.1756 24 6 1.5177 -0.2582 -7.0356 25 6 1.4326 -1.0487 -8.1694 26 6 2.3147 -2.0493 -8.2240 27 17 2.4407 -3.2031 -9.5150 28 16 3.3291 -2.0201 -6.7875 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7517 -0.1583 2.1369 33 1 1.6054 -1.7198 1.2951 34 1 4.3533 -1.7640 -0.4804 35 1 5.0473 -2.2387 1.0885 36 1 3.4427 -2.8399 0.6066 37 1 6.9003 -0.1537 -0.1279 38 1 2.2491 -1.6316 -1.1527 39 1 4.5765 0.4344 -3.5727 40 1 4.6421 -1.1241 -4.5569 41 1 0.8611 0.5815 -6.8623 42 1 0.7053 -0.8718 -8.9480 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754323970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:29 Heat of formation + Delta-G solvation = 36.540633 kcal Electronic energy + Delta-G solvation = -25007.797063 eV Core-core repulsion = 21335.070599 eV Total energy + Delta-G solvation = -3672.726464 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 342.091 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -39.72809 -38.32673 -37.18036 -36.56413 -35.68538 -33.97917 -31.30006 -30.27645 -29.39640 -26.18836 -25.64719 -24.88141 -23.96970 -21.91031 -21.57687 -20.14419 -19.75308 -19.63503 -17.68130 -16.92266 -16.78744 -15.89218 -15.53136 -14.90959 -14.69469 -14.20091 -13.98039 -13.91484 -13.65295 -13.40189 -13.22367 -12.90760 -12.85829 -12.50474 -12.15559 -12.10367 -11.98031 -11.90873 -11.44724 -11.25767 -11.11520 -10.90621 -10.86524 -10.80469 -10.60821 -10.51646 -10.41609 -10.21864 -9.97053 -9.87024 -9.34307 -8.76489 -8.62235 -8.56959 -8.35945 -6.75905 -5.74106 -3.20330 0.55708 0.86724 1.60703 2.00030 2.34871 3.01078 3.37793 3.44731 3.45423 3.63851 4.04534 4.47011 4.50309 4.76201 4.93619 5.06316 5.20221 5.22224 5.28948 5.36507 5.48040 5.66835 5.68325 5.77920 5.86604 5.94015 5.99483 6.03185 6.09705 6.14223 6.17349 6.24547 6.46839 6.53349 6.63581 6.87755 7.18491 7.30819 7.65155 7.79424 8.13468 8.37963 8.82077 9.21875 9.83954 10.32308 11.30711 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.002632 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.990770 B =10635.742587 C =11454.056606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.118 3.882 3 H 0.085 0.915 4 C 0.143 3.857 5 N -0.597 5.597 6 C 0.161 3.839 7 C -0.255 4.255 8 H 0.067 0.933 9 C 0.006 3.994 10 N -0.903 5.903 11 Si 0.903 3.097 12 H -0.289 1.289 13 H -0.292 1.292 14 H -0.280 1.280 15 N -0.692 5.692 16 C 0.549 3.451 17 O -0.552 6.552 18 C -0.166 4.166 19 H 0.120 0.880 20 C -0.131 4.131 21 C -0.067 4.067 22 H 0.139 0.861 23 C -0.126 4.126 24 C -0.135 4.135 25 C -0.112 4.112 26 C -0.161 4.161 27 Cl -0.020 7.020 28 S 0.158 5.842 29 H 0.051 0.949 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.058 0.942 33 H 0.041 0.959 34 H 0.033 0.967 35 H 0.042 0.958 36 H -0.006 1.006 37 H 0.251 0.749 38 H 0.396 0.604 39 H 0.117 0.883 40 H 0.102 0.898 41 H 0.150 0.850 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.995 -5.786 -15.213 18.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.010 3.990 3 H 0.103 0.897 4 C 0.014 3.986 5 N -0.319 5.319 6 C 0.017 3.983 7 C -0.385 4.385 8 H 0.085 0.915 9 C -0.193 4.193 10 N -0.548 5.548 11 Si 0.733 3.267 12 H -0.216 1.216 13 H -0.218 1.218 14 H -0.206 1.206 15 N -0.340 5.340 16 C 0.334 3.666 17 O -0.431 6.431 18 C -0.188 4.188 19 H 0.138 0.862 20 C -0.169 4.169 21 C -0.088 4.088 22 H 0.157 0.843 23 C -0.244 4.244 24 C -0.164 4.164 25 C -0.144 4.144 26 C -0.305 4.305 27 Cl 0.008 6.992 28 S 0.421 5.579 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.061 0.939 36 H 0.012 0.988 37 H 0.061 0.939 38 H 0.230 0.770 39 H 0.135 0.865 40 H 0.120 0.880 41 H 0.167 0.833 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -7.809 -5.976 -14.905 17.856 hybrid contribution -0.312 0.846 -0.313 0.954 sum -8.121 -5.130 -15.218 17.996 Atomic orbital electron populations 1.22156 0.96925 1.01071 1.01669 1.21870 0.91605 0.99152 0.86363 0.89682 1.21195 0.85841 0.97199 0.94340 1.43881 0.99024 1.20878 1.68144 1.20854 0.94532 0.85015 0.97948 1.19168 0.94580 1.10539 1.14208 0.91505 1.25004 0.98856 0.99051 0.96359 1.70031 1.17114 1.45665 1.21994 0.86282 0.80974 0.80469 0.78947 1.21600 1.21786 1.20562 1.45679 1.65570 1.13727 1.09009 1.19251 0.77145 0.86518 0.83660 1.90642 1.51378 1.15868 1.85244 1.22380 1.03069 1.00220 0.93172 0.86174 1.23101 0.89217 1.03642 1.00913 1.20554 1.03381 0.99445 0.85413 0.84347 1.23949 1.00608 0.99808 1.00005 1.19927 1.00224 1.02673 0.93622 1.20165 0.99921 0.94536 0.99816 1.25248 1.06371 1.00796 0.98068 1.98360 1.97456 1.57123 1.46258 1.84487 1.34564 1.27458 1.11397 0.92986 0.93215 0.92115 0.92328 0.94052 0.94887 0.93895 0.98774 0.93910 0.77016 0.86452 0.88019 0.83261 0.83492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.37 9.48 37.16 0.35 -2.01 16 2 C 0.12 2.16 2.88 -67.93 -0.20 1.96 16 3 H 0.09 1.90 7.58 -51.93 -0.39 1.51 16 4 C 0.14 2.70 5.33 -4.04 -0.02 2.68 16 5 N -0.60 -14.00 2.78 -181.12 -0.50 -14.51 16 6 C 0.16 3.63 7.61 59.84 0.46 4.09 16 7 C -0.26 -6.78 9.66 -15.06 -0.15 -6.93 16 8 H 0.07 1.76 7.85 -52.49 -0.41 1.35 16 9 C 0.01 0.16 5.13 -17.43 -0.09 0.07 16 10 N -0.90 -25.12 10.66 55.49 0.59 -24.53 16 11 Si 0.90 21.72 29.57 -169.99 -5.03 16.69 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 14 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 15 N -0.69 -12.24 4.41 -53.81 -0.24 -12.48 16 16 C 0.55 10.04 7.58 -10.99 -0.08 9.96 16 17 O -0.55 -11.88 15.92 5.55 0.09 -11.80 16 18 C -0.17 -2.42 5.89 -91.77 -0.54 -2.96 16 19 H 0.12 1.50 8.14 -51.93 -0.42 1.08 16 20 C -0.13 -1.86 9.75 -26.73 -0.26 -2.12 16 21 C -0.07 -0.89 5.73 -91.77 -0.53 -1.42 16 22 H 0.14 1.97 7.67 -51.93 -0.40 1.57 16 23 C -0.13 -1.46 6.14 -36.01 -0.22 -1.68 16 24 C -0.14 -1.41 10.05 -41.20 -0.41 -1.82 16 25 C -0.11 -1.09 10.13 -41.15 -0.42 -1.50 16 26 C -0.16 -1.67 7.10 29.08 0.21 -1.47 16 27 Cl -0.02 -0.19 29.29 -51.86 -1.52 -1.71 16 28 S 0.16 1.70 22.16 -107.50 -2.38 -0.69 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.82 8.14 -51.92 -0.42 0.39 16 32 H 0.06 1.09 8.03 -51.93 -0.42 0.67 16 33 H 0.04 0.69 7.86 -51.93 -0.41 0.28 16 34 H 0.03 0.79 6.90 -51.92 -0.36 0.43 16 35 H 0.04 1.07 7.30 -51.93 -0.38 0.69 16 36 H -0.01 -0.12 7.84 -51.93 -0.41 -0.53 16 37 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 38 H 0.40 6.46 7.17 -40.82 -0.29 6.17 16 39 H 0.12 1.95 8.14 -51.93 -0.42 1.52 16 40 H 0.10 1.28 7.27 -51.93 -0.38 0.90 16 41 H 0.15 1.36 8.06 -52.49 -0.42 0.93 16 42 H 0.15 1.12 8.06 -52.48 -0.42 0.70 16 LS Contribution 379.15 15.07 5.71 5.71 Total: -1.00 -30.03 379.15 -11.11 -41.14 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -5.94 Total: 5.33 kcal Atomic # 6 Polarization: -1.26 SS G_CDS: -1.90 Total: -3.16 kcal Atomic # 7 Polarization: -51.36 SS G_CDS: -0.15 Total: -51.51 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: 0.09 Total: -11.80 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.03 Total: 16.69 kcal Atomic # 16 Polarization: 1.70 SS G_CDS: -2.38 Total: -0.69 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.52 Total: -1.71 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.03 -11.11 -41.14 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754323970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.678 kcal (2) G-P(sol) polarization free energy of solvation -30.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds