Wall clock time and date at job start Wed Apr 1 2020 01:39:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46680 * 2 1 4 4 C 1.52995 * 109.47231 * 120.00193 * 2 1 3 5 5 N 1.46500 * 109.46956 * 175.00122 * 4 2 1 6 6 C 1.46496 * 119.99921 * 269.99741 * 5 4 2 7 7 C 1.36946 * 120.00081 * 90.00147 * 5 4 2 8 8 H 1.07994 * 119.99794 * 23.61280 * 7 5 4 9 9 C 1.38808 * 119.99501 * 203.61686 * 7 5 4 10 10 N 1.31614 * 120.00573 * 11.30754 * 9 7 5 11 11 Si 1.86811 * 119.99538 * 191.30691 * 9 7 5 12 12 H 1.48500 * 109.47000 * 89.99962 * 11 9 7 13 13 H 1.48502 * 109.47040 * 209.99982 * 11 9 7 14 14 H 1.48499 * 109.47129 * 330.00058 * 11 9 7 15 15 N 1.46501 * 109.46812 * 240.00530 * 2 1 3 16 16 C 1.34772 * 120.00299 * 85.00154 * 15 2 1 17 17 O 1.21285 * 119.99900 * 359.97438 * 16 15 2 18 18 C 1.50695 * 120.00221 * 180.02562 * 16 15 2 19 19 H 1.09000 * 115.55424 * 34.32041 * 18 16 15 20 20 C 1.53002 * 117.49749 * 248.61787 * 18 16 15 21 21 C 1.52995 * 59.99969 * 252.50830 * 20 18 16 22 22 H 1.09000 * 117.49785 * 107.49212 * 21 20 18 23 23 C 1.50710 * 117.49748 * 252.51121 * 21 20 18 24 24 C 1.33344 * 125.18532 * 188.34630 * 23 21 20 25 25 C 1.38474 * 114.92649 * 179.79642 * 24 23 21 26 26 C 1.33503 * 114.88132 * 0.48866 * 25 24 23 27 27 Cl 1.73604 * 125.20725 * 179.71393 * 26 25 24 28 28 S 1.75875 * 125.18823 * 8.64583 * 23 21 20 29 29 H 1.08998 * 109.47524 * 59.99750 * 1 2 3 30 30 H 1.08994 * 109.46872 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46668 * 299.99760 * 1 2 3 32 32 H 1.09002 * 109.47100 * 294.99818 * 4 2 1 33 33 H 1.08994 * 109.47398 * 54.99767 * 4 2 1 34 34 H 1.09009 * 109.47068 * 94.54104 * 6 5 4 35 35 H 1.09003 * 109.47340 * 214.53260 * 6 5 4 36 36 H 1.08994 * 109.47578 * 334.53989 * 6 5 4 37 37 H 0.97006 * 120.00235 * 179.97438 * 10 9 7 38 38 H 0.96999 * 119.99502 * 264.99077 * 15 2 1 39 39 H 1.09000 * 117.50244 * 359.97438 * 20 18 16 40 40 H 1.09004 * 117.50010 * 145.01839 * 20 18 16 41 41 H 1.07998 * 122.53727 * 359.97043 * 24 23 21 42 42 H 1.08003 * 122.55926 * 180.23263 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8263 1.1904 6 6 4.1258 -1.9918 0.5611 7 6 4.2799 0.1649 1.7240 8 1 3.8834 0.8070 2.4965 9 6 5.5799 0.3443 1.2717 10 7 5.9919 -0.2794 0.1883 11 14 6.7449 1.4710 2.2008 12 1 7.4752 0.6880 3.2298 13 1 7.7175 2.0690 1.2512 14 1 5.9681 2.5515 2.8598 15 7 2.0183 -0.6905 -1.1963 16 6 2.1470 -0.0181 -2.3572 17 8 1.8582 1.1586 -2.4116 18 6 2.6487 -0.7286 -3.5878 19 1 2.3509 -1.7729 -3.6821 20 6 4.0305 -0.3372 -4.1154 21 6 2.7727 0.0896 -4.8747 22 1 2.4913 1.1418 -4.8312 23 6 2.4741 -0.6102 -6.1756 24 6 1.5177 -0.2582 -7.0356 25 6 1.4326 -1.0487 -8.1694 26 6 2.3147 -2.0493 -8.2240 27 17 2.4407 -3.2031 -9.5150 28 16 3.3291 -2.0201 -6.7875 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.7517 -0.1583 2.1369 33 1 1.6054 -1.7198 1.2951 34 1 4.3533 -1.7640 -0.4804 35 1 5.0473 -2.2387 1.0885 36 1 3.4427 -2.8399 0.6066 37 1 6.9003 -0.1537 -0.1279 38 1 2.2491 -1.6316 -1.1527 39 1 4.5765 0.4344 -3.5727 40 1 4.6421 -1.1241 -4.5569 41 1 0.8611 0.5815 -6.8623 42 1 0.7053 -0.8718 -8.9480 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754323970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:39:28 Heat of formation + Delta-G solvation = 20.917027 kcal Electronic energy + Delta-G solvation = -25008.474554 eV Core-core repulsion = 21335.070599 eV Total energy + Delta-G solvation = -3673.403955 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 342.091 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.09026 -39.29774 -38.33154 -37.71250 -36.94417 -35.68097 -33.09298 -31.83227 -30.30292 -27.94751 -27.38953 -25.98369 -25.06543 -23.38084 -22.84474 -21.65298 -21.06937 -20.58369 -18.76704 -18.64175 -18.10937 -17.09765 -16.84754 -16.64474 -16.04347 -15.54032 -15.44730 -15.16753 -14.93828 -14.78446 -14.46801 -14.19728 -13.91111 -13.72898 -13.57019 -13.38115 -13.12064 -13.07317 -12.90103 -12.81021 -12.64989 -12.53041 -12.28586 -12.09591 -12.02839 -11.81336 -11.74536 -11.69834 -11.59706 -11.52748 -10.81132 -10.60520 -9.88984 -9.57732 -9.45693 -8.68743 -7.78974 -5.25336 -0.28212 0.05278 0.78096 1.20900 1.44647 1.46202 1.49058 1.53088 1.66695 2.32348 2.52392 2.88585 3.34169 3.41322 3.62800 3.72160 3.78664 4.04288 4.14382 4.23193 4.28671 4.43857 4.47427 4.56124 4.65046 4.78326 4.86192 4.87510 4.89782 4.93426 5.00765 5.02557 5.14431 5.21759 5.32375 5.39402 5.40726 5.68100 5.74662 5.83013 6.37548 6.71585 7.21190 7.39824 7.92642 8.33529 9.22577 Molecular weight = 342.09amu Principal moments of inertia in cm(-1) A = 0.015466 B = 0.002632 C = 0.002444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.990770 B =10635.742587 C =11454.056606 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.123 3.877 3 H 0.036 0.964 4 C 0.142 3.858 5 N -0.611 5.611 6 C 0.173 3.827 7 C -0.260 4.260 8 H 0.064 0.936 9 C -0.046 4.046 10 N -0.923 5.923 11 Si 0.956 3.044 12 H -0.285 1.285 13 H -0.299 1.299 14 H -0.276 1.276 15 N -0.689 5.689 16 C 0.540 3.460 17 O -0.593 6.593 18 C -0.168 4.168 19 H 0.146 0.854 20 C -0.135 4.135 21 C -0.047 4.047 22 H 0.125 0.875 23 C -0.145 4.145 24 C -0.127 4.127 25 C -0.111 4.111 26 C -0.166 4.166 27 Cl -0.012 7.012 28 S 0.157 5.843 29 H 0.039 0.961 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.062 0.938 33 H 0.076 0.924 34 H 0.016 0.984 35 H 0.010 0.990 36 H 0.034 0.966 37 H 0.244 0.756 38 H 0.404 0.596 39 H 0.086 0.914 40 H 0.120 0.880 41 H 0.162 0.838 42 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.573 -7.114 -15.922 20.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.016 3.984 3 H 0.054 0.946 4 C 0.015 3.985 5 N -0.334 5.334 6 C 0.029 3.971 7 C -0.391 4.391 8 H 0.082 0.918 9 C -0.242 4.242 10 N -0.570 5.570 11 Si 0.786 3.214 12 H -0.212 1.212 13 H -0.226 1.226 14 H -0.201 1.201 15 N -0.337 5.337 16 C 0.327 3.673 17 O -0.474 6.474 18 C -0.190 4.190 19 H 0.164 0.836 20 C -0.173 4.173 21 C -0.068 4.068 22 H 0.143 0.857 23 C -0.263 4.263 24 C -0.156 4.156 25 C -0.143 4.143 26 C -0.309 4.309 27 Cl 0.016 6.984 28 S 0.421 5.579 29 H 0.058 0.942 30 H 0.094 0.906 31 H 0.094 0.906 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.034 0.966 35 H 0.029 0.971 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.240 0.760 39 H 0.105 0.895 40 H 0.138 0.862 41 H 0.180 0.820 42 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -9.411 -7.330 -15.590 19.631 hybrid contribution 0.113 1.246 -0.107 1.256 sum -9.298 -6.084 -15.697 19.232 Atomic orbital electron populations 1.22019 0.93717 1.02831 1.01880 1.21668 0.93981 0.96393 0.86406 0.94557 1.21364 0.83342 0.99207 0.94565 1.44072 1.00802 1.20476 1.68013 1.20647 0.94205 0.86013 0.96261 1.19418 0.95099 1.10674 1.13913 0.91839 1.25631 1.00335 1.00826 0.97395 1.70169 1.16818 1.46943 1.23049 0.85436 0.79158 0.79088 0.77738 1.21236 1.22595 1.20097 1.45696 1.65209 1.14057 1.08732 1.19870 0.76450 0.86227 0.84743 1.90614 1.53142 1.17684 1.86002 1.22374 1.03028 1.01303 0.92252 0.83645 1.23013 0.89420 1.03511 1.01329 1.20362 1.01768 0.98790 0.85876 0.85737 1.23771 1.01990 1.00828 0.99680 1.20167 0.99534 1.02657 0.93281 1.20384 1.00058 0.93857 0.99962 1.25393 1.06258 1.01162 0.98094 1.98366 1.97418 1.56826 1.45742 1.84454 1.34692 1.26941 1.11823 0.94155 0.90566 0.90571 0.91947 0.90626 0.96571 0.97105 0.94718 0.94656 0.76016 0.89530 0.86219 0.82045 0.81229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.05 9.48 71.98 0.68 -3.36 16 2 C 0.12 4.45 2.88 44.99 0.13 4.58 16 3 H 0.04 1.67 7.58 -2.39 -0.02 1.65 16 4 C 0.14 5.14 5.33 86.38 0.46 5.60 16 5 N -0.61 -28.35 2.78 -726.96 -2.02 -30.37 16 6 C 0.17 7.71 7.61 127.77 0.97 8.68 16 7 C -0.26 -13.93 9.66 84.03 0.81 -13.12 16 8 H 0.06 3.37 7.85 -2.91 -0.02 3.35 16 9 C -0.05 -2.54 5.13 84.86 0.44 -2.10 16 10 N -0.92 -52.57 10.66 21.65 0.23 -52.33 16 11 Si 0.96 45.39 29.57 68.60 2.03 47.42 16 12 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 13 H -0.30 -14.46 7.11 99.48 0.71 -13.75 16 14 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 15 N -0.69 -24.05 4.41 -442.54 -1.95 -26.00 16 16 C 0.54 20.03 7.58 87.66 0.66 20.69 16 17 O -0.59 -26.42 15.92 -3.04 -0.05 -26.47 16 18 C -0.17 -4.85 5.89 -11.54 -0.07 -4.92 16 19 H 0.15 3.41 8.14 -2.39 -0.02 3.39 16 20 C -0.13 -3.92 9.75 30.59 0.30 -3.62 16 21 C -0.05 -1.26 5.73 -11.54 -0.07 -1.32 16 22 H 0.12 3.65 7.67 -2.39 -0.02 3.64 16 23 C -0.14 -3.18 6.14 24.58 0.15 -3.03 16 24 C -0.13 -2.39 10.05 21.22 0.21 -2.18 16 25 C -0.11 -1.87 10.13 21.25 0.22 -1.65 16 26 C -0.17 -3.08 7.10 66.75 0.47 -2.61 16 27 Cl -0.01 -0.20 29.29 -2.72 -0.08 -0.28 16 28 S 0.16 3.15 22.16 -56.49 -1.25 1.90 16 29 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.08 1.88 8.14 -2.38 -0.02 1.86 16 32 H 0.06 2.22 8.03 -2.39 -0.02 2.20 16 33 H 0.08 2.25 7.86 -2.39 -0.02 2.23 16 34 H 0.02 0.77 6.90 -2.38 -0.02 0.75 16 35 H 0.01 0.52 7.30 -2.39 -0.02 0.50 16 36 H 0.03 1.24 7.84 -2.39 -0.02 1.22 16 37 H 0.24 13.74 8.31 -92.70 -0.77 12.97 16 38 H 0.40 12.60 7.17 -92.71 -0.66 11.94 16 39 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 40 H 0.12 2.99 7.27 -2.38 -0.02 2.98 16 41 H 0.16 2.61 8.06 -2.91 -0.02 2.58 16 42 H 0.17 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -66.26 379.15 2.65 -63.60 By element: Atomic # 1 Polarization: 20.52 SS G_CDS: 0.37 Total: 20.89 kcal Atomic # 6 Polarization: -3.73 SS G_CDS: 5.37 Total: 1.64 kcal Atomic # 7 Polarization: -104.96 SS G_CDS: -3.74 Total: -108.70 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.05 Total: -26.47 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -1.25 Total: 1.90 kcal Atomic # 17 Polarization: -0.20 SS G_CDS: -0.08 Total: -0.28 kcal Total: -66.26 2.65 -63.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754323970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.518 kcal (2) G-P(sol) polarization free energy of solvation -66.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds