Wall clock time and date at job start Wed Apr 1 2020 00:17:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 119.99651 * 2 1 4 4 H 1.48503 * 109.47012 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47311 * 299.99608 * 3 2 1 6 6 H 1.48499 * 109.47344 * 59.99576 * 3 2 1 7 7 C 1.38805 * 119.99992 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99936 * 189.10834 * 7 2 1 9 9 N 1.36931 * 120.00494 * 9.09997 * 7 2 1 10 10 C 1.48154 * 127.83484 * 15.57891 * 9 7 2 11 11 C 1.54384 * 104.61946 * 140.41043 * 10 9 7 12 12 H 1.08993 * 117.61877 * 242.76373 * 11 10 9 13 13 C 1.54292 * 104.96059 * 23.86806 * 11 10 9 14 14 H 1.09000 * 121.81446 * 222.18035 * 13 11 10 15 15 C 1.48151 * 127.84426 * 195.57371 * 9 7 2 16 16 C 1.52999 * 59.72397 * 114.13680 * 13 11 10 17 17 H 1.08997 * 117.40750 * 252.33645 * 16 13 11 18 18 N 1.46508 * 117.44093 * 107.64430 * 16 13 11 19 19 C 1.34777 * 119.99253 * 135.48225 * 18 16 13 20 20 O 1.21475 * 120.00412 * 0.28397 * 19 18 16 21 21 C 1.48453 * 119.99454 * 180.27729 * 19 18 16 22 22 C 1.39542 * 120.55116 * 180.02562 * 21 19 18 23 23 C 1.38765 * 118.26375 * 180.02562 * 22 21 19 24 24 C 1.50697 * 120.42359 * 179.97438 * 23 22 21 25 25 F 1.39904 * 109.47191 * 89.99990 * 24 23 22 26 26 F 1.39898 * 109.47194 * 210.00390 * 24 23 22 27 27 F 1.39906 * 109.47031 * 330.00230 * 24 23 22 28 28 N 1.32201 * 119.14590 * 0.02562 * 23 22 21 29 29 C 1.31876 * 121.04297 * 359.97438 * 28 23 22 30 30 N 1.31587 * 121.91521 * 359.72486 * 29 28 23 31 31 H 0.97002 * 120.00575 * 0.02562 * 1 2 3 32 32 H 1.08996 * 110.40585 * 21.62539 * 10 9 7 33 33 H 1.09006 * 110.40153 * 259.19722 * 10 9 7 34 34 H 1.08995 * 110.40071 * 338.37129 * 15 9 7 35 35 H 1.08995 * 110.40801 * 100.68481 * 15 9 7 36 36 H 0.96998 * 119.99761 * 315.76524 * 18 16 13 37 37 H 1.07992 * 120.86599 * 359.97438 * 22 21 19 38 38 H 1.07996 * 119.04707 * 179.97438 * 29 28 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8913 2.3965 1.2124 7 6 2.0102 -1.2021 0.0005 8 1 3.0801 -1.2079 0.1486 9 7 1.3386 -2.3806 -0.1865 10 6 -0.0341 -2.5711 -0.7103 11 6 0.0640 -3.8173 -1.6163 12 1 -0.1482 -3.6884 -2.6776 13 6 1.2862 -4.5976 -1.0893 14 1 2.0098 -5.0558 -1.7636 15 6 1.8196 -3.7545 0.0889 16 6 -0.1182 -5.1932 -0.9722 17 1 -0.5674 -5.2278 0.0202 18 7 -0.4524 -6.3132 -1.8557 19 6 -1.0980 -7.3894 -1.3644 20 8 -1.4073 -7.4286 -0.1903 21 6 -1.4312 -8.5270 -2.2582 22 6 -2.0998 -9.6467 -1.7619 23 6 -2.3870 -10.6828 -2.6391 24 6 -3.1068 -11.9152 -2.1551 25 9 -4.4872 -11.7330 -2.2918 26 9 -2.7045 -13.0188 -2.9148 27 9 -2.7969 -12.1377 -0.8090 28 7 -2.0203 -10.5754 -3.9047 29 6 -1.3894 -9.5027 -4.3411 30 7 -1.1014 -8.4937 -3.5471 31 1 -0.4851 0.8400 -0.0004 32 1 -0.3431 -1.7022 -1.2913 33 1 -0.7317 -2.7499 0.1080 34 1 2.9091 -3.7784 0.1108 35 1 1.4132 -4.1174 1.0329 36 1 -0.2054 -6.2818 -2.7932 37 1 -2.3855 -9.7058 -0.7221 38 1 -1.1043 -9.4490 -5.3814 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000961050708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:17:47 Heat of formation + Delta-G solvation = -60.854965 kcal Electronic energy + Delta-G solvation = -28329.883540 eV Core-core repulsion = 23567.216581 eV Total energy + Delta-G solvation = -4762.666960 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 342.104 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.73761 -48.26764 -48.18453 -42.01180 -39.90705 -38.45368 -35.17215 -34.56225 -33.23009 -32.68438 -30.35284 -28.18961 -27.23692 -26.33585 -25.30279 -24.37313 -22.28068 -21.07858 -20.52279 -19.44143 -19.41457 -19.28553 -19.11508 -18.26468 -17.11711 -16.80245 -16.33713 -16.23439 -16.00209 -15.79287 -15.06572 -14.96616 -14.79851 -14.64731 -14.61141 -14.47254 -14.32534 -14.31265 -13.69415 -13.37762 -13.13823 -12.82361 -12.32595 -11.85891 -11.82692 -11.61390 -11.59576 -11.08554 -10.89005 -10.79867 -10.62046 -10.47798 -10.32426 -10.18779 -10.11031 -9.79734 -9.30764 -8.81792 -8.51205 -6.92812 -5.84888 -3.19390 -0.36198 -0.12702 1.66483 2.18074 2.46714 2.82397 3.01557 3.10594 3.29205 3.35329 3.41265 3.43633 3.71650 3.73888 3.97485 4.11822 4.18422 4.42253 4.56530 4.75482 5.03514 5.24635 5.29399 5.31227 5.48673 5.73749 5.80785 5.84739 5.93327 6.11656 6.42919 6.58726 6.63059 6.81533 6.99305 7.25561 7.30198 7.47013 7.66446 7.83095 8.14653 9.05620 9.68341 10.44350 11.29562 Molecular weight = 342.10amu Principal moments of inertia in cm(-1) A = 0.035110 B = 0.001877 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 797.306861 B =14913.330784 C =15115.986426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C -0.006 4.006 3 Si 0.913 3.087 4 H -0.278 1.278 5 H -0.289 1.289 6 H -0.290 1.290 7 C -0.227 4.227 8 H 0.078 0.922 9 N -0.592 5.592 10 C 0.184 3.816 11 C -0.175 4.175 12 H 0.106 0.894 13 C -0.178 4.178 14 H 0.105 0.895 15 C 0.155 3.845 16 C 0.087 3.913 17 H 0.136 0.864 18 N -0.667 5.667 19 C 0.569 3.431 20 O -0.514 6.514 21 C 0.152 3.848 22 C -0.123 4.123 23 C 0.089 3.911 24 C 0.528 3.472 25 F -0.163 7.163 26 F -0.158 7.158 27 F -0.162 7.162 28 N -0.468 5.468 29 C 0.307 3.693 30 N -0.471 5.471 31 H 0.255 0.745 32 H 0.093 0.907 33 H 0.027 0.973 34 H 0.053 0.947 35 H 0.029 0.971 36 H 0.411 0.589 37 H 0.177 0.823 38 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.346 -23.685 -8.896 25.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.203 4.203 3 Si 0.744 3.256 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.355 4.355 8 H 0.096 0.904 9 N -0.316 5.316 10 C 0.058 3.942 11 C -0.196 4.196 12 H 0.124 0.876 13 C -0.199 4.199 14 H 0.123 0.877 15 C 0.028 3.972 16 C -0.018 4.018 17 H 0.153 0.847 18 N -0.315 5.315 19 C 0.351 3.649 20 O -0.388 6.388 21 C 0.002 3.998 22 C -0.146 4.146 23 C -0.061 4.061 24 C 0.472 3.528 25 F -0.144 7.144 26 F -0.139 7.139 27 F -0.143 7.143 28 N -0.182 5.182 29 C 0.020 3.980 30 N -0.187 5.187 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.045 0.955 34 H 0.072 0.928 35 H 0.047 0.953 36 H 0.247 0.753 37 H 0.195 0.805 38 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges -5.326 -23.348 -8.932 25.559 hybrid contribution 0.193 0.497 0.138 0.551 sum -5.133 -22.851 -8.794 25.017 Atomic orbital electron populations 1.69897 1.05069 1.25427 1.55696 1.24910 0.95665 0.98047 1.01649 0.86030 0.78876 0.83436 0.77304 1.20338 1.21597 1.21646 1.19034 0.90871 0.82206 1.43417 0.90411 1.45185 1.13308 1.00007 1.73077 1.21094 0.87046 0.92362 0.93707 1.24687 1.01983 0.92135 1.00781 0.87595 1.24393 0.90259 1.02099 1.03199 0.87671 1.21129 0.97371 0.85802 0.92874 1.22024 0.99311 0.84777 0.95678 0.84664 1.45212 1.55938 1.16618 1.13697 1.17521 0.79325 0.81603 0.86406 1.90853 1.53068 1.79485 1.15368 1.21855 0.92860 0.94295 0.90752 1.22718 0.95971 0.92257 1.03653 1.21461 0.98207 0.94651 0.91799 1.17612 0.77248 0.82393 0.75535 1.93283 1.30425 1.95213 1.95499 1.93269 1.90228 1.54891 1.75517 1.93273 1.92754 1.95005 1.33310 1.67946 1.09609 1.26583 1.14033 1.25201 0.89599 0.82485 1.00733 1.68440 1.17217 1.29223 1.03851 0.93520 0.88899 0.95477 0.92840 0.95322 0.75273 0.80539 0.76439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.25 10.86 55.49 0.60 -25.64 16 2 C -0.01 -0.15 5.40 -17.43 -0.09 -0.25 16 3 Si 0.91 21.50 29.56 -169.99 -5.03 16.48 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.23 -6.17 10.35 -15.06 -0.16 -6.33 16 8 H 0.08 2.04 7.85 -52.48 -0.41 1.63 16 9 N -0.59 -14.72 3.38 -168.86 -0.57 -15.29 16 10 C 0.18 4.26 5.70 -2.41 -0.01 4.24 16 11 C -0.17 -3.10 7.06 -89.21 -0.63 -3.73 16 12 H 0.11 1.71 8.14 -51.93 -0.42 1.29 16 13 C -0.18 -2.99 7.06 -89.22 -0.63 -3.62 16 14 H 0.11 1.57 8.14 -51.93 -0.42 1.15 16 15 C 0.16 3.14 7.04 -2.41 -0.02 3.12 16 16 C 0.09 1.37 5.97 -67.92 -0.41 0.96 16 17 H 0.14 2.37 7.40 -51.93 -0.38 1.98 16 18 N -0.67 -8.46 5.56 -54.55 -0.30 -8.76 16 19 C 0.57 7.36 7.83 -12.05 -0.09 7.26 16 20 O -0.51 -8.13 15.99 5.39 0.09 -8.04 16 21 C 0.15 1.57 6.79 -82.63 -0.56 1.00 16 22 C -0.12 -1.13 9.07 -38.90 -0.35 -1.48 16 23 C 0.09 0.78 6.33 -82.24 -0.52 0.26 16 24 C 0.53 4.38 3.45 36.00 0.12 4.50 16 25 F -0.16 -1.41 17.30 2.25 0.04 -1.37 16 26 F -0.16 -1.39 17.07 2.25 0.04 -1.35 16 27 F -0.16 -1.31 16.54 2.25 0.04 -1.28 16 28 N -0.47 -3.98 10.08 -10.81 -0.11 -4.09 16 29 C 0.31 2.15 12.28 -92.26 -1.13 1.02 16 30 N -0.47 -4.14 9.70 -11.14 -0.11 -4.25 16 31 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 32 H 0.09 2.40 6.51 -51.93 -0.34 2.06 16 33 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 34 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.41 4.40 8.21 -40.82 -0.34 4.07 16 37 H 0.18 1.47 7.37 -52.49 -0.39 1.08 16 38 H 0.22 0.65 8.06 -52.49 -0.42 0.23 16 LS Contribution 346.11 15.07 5.22 5.22 Total: -1.00 -30.94 346.11 -8.11 -39.05 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.53 Total: 2.37 kcal Atomic # 6 Polarization: 11.45 SS G_CDS: -4.48 Total: 6.97 kcal Atomic # 7 Polarization: -57.55 SS G_CDS: -0.49 Total: -58.04 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: 0.09 Total: -8.04 kcal Atomic # 9 Polarization: -4.11 SS G_CDS: 0.11 Total: -4.00 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -30.94 -8.11 -39.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961050708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.804 kcal (2) G-P(sol) polarization free energy of solvation -30.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds