Wall clock time and date at job start Wed Apr 1 2020 01:37:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 120.00059 * 2 1 4 4 H 1.48502 * 109.47064 * 239.99946 * 3 2 1 5 5 H 1.48497 * 109.47090 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47279 * 119.99482 * 3 2 1 7 7 C 1.37874 * 120.00206 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00050 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99876 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.46976 * 180.02562 * 9 7 2 11 11 N 1.46509 * 109.46972 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99616 * 179.97438 * 11 10 9 13 13 O 1.21342 * 120.00274 * 359.97438 * 12 11 10 14 14 C 1.49449 * 119.99368 * 179.97438 * 12 11 10 15 15 O 1.21353 * 120.00498 * 359.97438 * 14 12 11 16 16 N 1.34778 * 119.99785 * 180.02562 * 14 12 11 17 17 C 1.46498 * 119.99991 * 180.02562 * 16 14 12 18 18 C 1.50703 * 109.47448 * 179.97438 * 17 16 14 19 19 C 1.38262 * 119.94360 * 89.99476 * 18 17 16 20 20 C 1.38145 * 120.05938 * 180.02562 * 19 18 17 21 21 C 1.38731 * 119.93835 * 0.02562 * 20 19 18 22 22 O 1.35905 * 120.05264 * 180.02562 * 21 20 19 23 23 C 1.42905 * 116.99842 * 180.02562 * 22 21 20 24 24 F 1.39897 * 109.46886 * 299.99632 * 23 22 21 25 25 F 1.39898 * 109.47456 * 59.99851 * 23 22 21 26 26 C 1.38729 * 119.89194 * 0.27526 * 21 20 19 27 27 C 1.38146 * 119.94131 * 359.46928 * 26 21 20 28 28 H 0.96995 * 119.99843 * 0.02562 * 1 2 3 29 29 H 1.08995 * 109.47591 * 59.99813 * 9 7 2 30 30 H 1.09001 * 109.46764 * 299.99681 * 9 7 2 31 31 H 1.08997 * 109.47761 * 60.00014 * 10 9 7 32 32 H 1.09001 * 109.46922 * 299.99350 * 10 9 7 33 33 H 0.97003 * 119.99732 * 359.97438 * 11 10 9 34 34 H 0.97000 * 120.00023 * 0.02562 * 16 14 12 35 35 H 1.09002 * 109.47132 * 59.99848 * 17 16 14 36 36 H 1.09006 * 109.47422 * 300.00117 * 17 16 14 37 37 H 1.07999 * 119.97562 * 0.03351 * 19 18 17 38 38 H 1.07990 * 120.03151 * 179.97438 * 20 19 18 39 39 H 1.09001 * 109.47103 * 180.02562 * 23 22 21 40 40 H 1.08000 * 120.03286 * 179.71870 * 26 21 20 41 41 H 1.08005 * 119.97222 * 180.23075 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0018 11 7 1.5129 -4.9308 0.0012 12 6 2.1868 -6.0980 0.0016 13 8 3.4003 -6.0979 0.0020 14 6 1.4395 -7.3922 0.0016 15 8 0.2260 -7.3923 0.0016 16 7 2.1134 -8.5594 0.0025 17 6 1.3810 -9.8281 0.0019 18 6 2.3602 -10.9736 0.0025 19 6 2.8079 -11.4982 1.2009 20 6 3.7059 -12.5479 1.2042 21 6 4.1590 -13.0753 0.0038 22 8 5.0421 -14.1084 0.0044 23 6 5.4658 -14.6004 -1.2687 24 9 4.3545 -15.0563 -1.9857 25 9 6.0910 -13.5719 -1.9817 26 6 3.7131 -12.5431 -1.1973 27 6 2.8110 -11.4969 -1.1952 28 1 -0.4850 0.8400 -0.0004 29 1 0.6247 -2.5571 -0.8896 30 1 0.6241 -2.5566 0.8903 31 1 2.8714 -3.6040 0.8922 32 1 2.8726 -3.6047 -0.8878 33 1 0.5428 -4.9308 0.0005 34 1 3.0834 -8.5594 0.0036 35 1 0.7553 -9.8860 -0.8888 36 1 0.7532 -9.8858 0.8912 37 1 2.4551 -11.0871 2.1352 38 1 4.0556 -12.9570 2.1405 39 1 6.1674 -15.4222 -1.1254 40 1 4.0679 -12.9490 -2.1332 41 1 2.4607 -11.0846 -2.1300 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344856401.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:37:19 Heat of formation + Delta-G solvation = -197.932359 kcal Electronic energy + Delta-G solvation = -27770.630229 eV Core-core repulsion = 23093.186701 eV Total energy + Delta-G solvation = -4677.443527 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -49.92041 -47.90733 -40.72129 -40.26857 -38.57429 -37.97237 -35.47409 -34.66760 -32.85243 -31.59541 -31.29788 -29.81128 -27.61243 -26.17437 -25.11100 -23.49046 -23.23948 -21.83932 -21.02913 -20.22306 -19.58254 -18.78769 -18.48092 -18.41030 -16.84695 -16.67577 -16.30631 -16.12354 -15.91459 -15.42309 -15.26747 -15.09862 -14.73207 -14.51612 -14.48829 -14.43822 -14.27293 -14.21651 -13.96064 -13.57596 -13.42479 -13.09553 -12.99091 -12.56699 -12.43367 -12.31270 -11.86663 -11.51557 -11.43506 -11.23838 -11.04453 -10.68319 -10.38678 -9.81175 -9.53233 -9.47959 -9.38551 -9.25264 -8.86054 -8.69168 -8.41149 -6.09644 -4.13430 0.66946 0.82994 1.61070 1.96200 2.54565 2.89559 3.21422 3.30948 3.35170 3.38039 3.42934 3.70393 3.96761 4.04967 4.21882 4.25945 4.34423 4.40833 4.68032 4.76673 4.82664 4.95146 5.22109 5.27098 5.33145 5.50074 5.61481 5.73872 6.01192 6.06766 6.08245 6.18525 6.24241 6.52236 6.59941 6.69696 7.04522 7.46790 7.58227 7.66151 7.87448 7.92153 8.21550 8.34465 8.91893 9.51394 11.01738 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.026318 B = 0.001555 C = 0.001511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.644676 B =18007.069330 C =18523.462089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.898 3.102 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.060 0.940 9 C 0.011 3.989 10 C 0.119 3.881 11 N -0.686 5.686 12 C 0.497 3.503 13 O -0.533 6.533 14 C 0.508 3.492 15 O -0.520 6.520 16 N -0.703 5.703 17 C 0.162 3.838 18 C -0.133 4.133 19 C -0.063 4.063 20 C -0.136 4.136 21 C 0.112 3.888 22 O -0.321 6.321 23 C 0.411 3.589 24 F -0.198 7.198 25 F -0.197 7.197 26 C -0.192 4.192 27 C -0.059 4.059 28 H 0.263 0.737 29 H 0.025 0.975 30 H 0.025 0.975 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.411 0.589 34 H 0.414 0.586 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.183 0.817 40 H 0.135 0.865 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.213 -33.766 -0.644 34.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.201 1.201 7 C -0.563 4.563 8 H 0.078 0.922 9 C -0.027 4.027 10 C -0.003 4.003 11 N -0.337 5.337 12 C 0.277 3.723 13 O -0.411 6.411 14 C 0.289 3.711 15 O -0.395 6.395 16 N -0.358 5.358 17 C 0.040 3.960 18 C -0.134 4.134 19 C -0.081 4.081 20 C -0.154 4.154 21 C 0.068 3.932 22 O -0.238 6.238 23 C 0.321 3.679 24 F -0.180 7.180 25 F -0.178 7.178 26 C -0.210 4.210 27 C -0.078 4.078 28 H 0.073 0.927 29 H 0.044 0.956 30 H 0.044 0.956 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.246 0.754 34 H 0.250 0.750 35 H 0.100 0.900 36 H 0.101 0.899 37 H 0.156 0.844 38 H 0.155 0.845 39 H 0.199 0.801 40 H 0.153 0.847 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 8.093 -33.686 -0.527 34.648 hybrid contribution 0.399 0.896 -0.388 1.055 sum 8.492 -32.789 -0.916 33.883 Atomic orbital electron populations 1.69947 1.06083 1.27057 1.49954 1.24999 0.94902 0.99421 0.94923 0.86553 0.79491 0.82613 0.78749 1.20120 1.21230 1.20110 1.20975 0.93188 0.90258 1.51874 0.92217 1.19356 0.94192 0.90853 0.98262 1.21940 0.96275 0.80748 1.01340 1.46237 1.11791 1.05780 1.69877 1.19954 0.87707 0.85228 0.79448 1.90734 1.13233 1.87513 1.49615 1.20486 0.87729 0.85513 0.77355 1.90764 1.13404 1.87639 1.47669 1.45847 1.11562 1.04448 1.73899 1.20234 0.92423 0.79514 1.03854 1.19849 1.00994 0.99033 0.93479 1.20984 0.94771 0.94216 0.98149 1.20452 1.00280 0.98572 0.96102 1.18943 0.90917 0.88255 0.95057 1.86632 1.59062 1.48233 1.29922 1.23385 0.82603 0.86647 0.75226 1.93108 1.56643 1.88948 1.79304 1.93119 1.82410 1.62873 1.79449 1.21545 1.02038 1.00490 0.96960 1.20945 0.94510 0.94170 0.98129 0.92721 0.95643 0.95645 0.91850 0.91867 0.75372 0.74973 0.89979 0.89890 0.84437 0.84468 0.80090 0.84693 0.84885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.07 13.29 55.43 0.74 -25.33 16 2 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.41 9.11 -34.44 -0.31 -14.73 16 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 9 C 0.01 0.27 5.09 -27.88 -0.14 0.13 16 10 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 11 N -0.69 -12.47 5.55 -60.73 -0.34 -12.81 16 12 C 0.50 8.52 7.89 -11.59 -0.09 8.43 16 13 O -0.53 -10.09 16.48 5.50 0.09 -10.00 16 14 C 0.51 7.45 7.89 -11.59 -0.09 7.36 16 15 O -0.52 -8.57 16.48 5.49 0.09 -8.48 16 16 N -0.70 -7.91 5.54 -61.91 -0.34 -8.26 16 17 C 0.16 1.45 5.80 -5.19 -0.03 1.42 16 18 C -0.13 -1.06 5.25 -104.60 -0.55 -1.61 16 19 C -0.06 -0.45 9.69 -39.61 -0.38 -0.84 16 20 C -0.14 -1.00 9.99 -39.43 -0.39 -1.39 16 21 C 0.11 0.92 6.48 -39.22 -0.25 0.66 16 22 O -0.32 -2.23 10.43 -19.44 -0.20 -2.43 16 23 C 0.41 1.88 5.98 101.05 0.60 2.48 16 24 F -0.20 -1.24 15.60 2.25 0.04 -1.21 16 25 F -0.20 -1.31 15.57 2.25 0.04 -1.28 16 26 C -0.19 -1.59 8.26 -39.43 -0.33 -1.92 16 27 C -0.06 -0.47 9.69 -39.61 -0.38 -0.86 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 30 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.41 7.10 7.94 -40.82 -0.32 6.78 16 34 H 0.41 4.44 7.94 -40.82 -0.32 4.12 16 35 H 0.08 0.73 8.08 -51.93 -0.42 0.31 16 36 H 0.08 0.72 8.09 -51.93 -0.42 0.30 16 37 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 38 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 39 H 0.18 -0.07 8.14 -51.93 -0.42 -0.49 16 40 H 0.14 1.07 5.10 -52.49 -0.27 0.80 16 41 H 0.13 0.91 8.06 -52.48 -0.42 0.48 16 LS Contribution 370.05 15.07 5.58 5.58 Total: -1.00 -33.24 370.05 -6.49 -39.73 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -4.68 Total: 5.07 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: -2.48 Total: 3.16 kcal Atomic # 7 Polarization: -46.45 SS G_CDS: 0.06 Total: -46.40 kcal Atomic # 8 Polarization: -20.90 SS G_CDS: -0.02 Total: -20.92 kcal Atomic # 9 Polarization: -2.55 SS G_CDS: 0.07 Total: -2.48 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.24 -6.49 -39.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344856401.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.199 kcal (2) G-P(sol) polarization free energy of solvation -33.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.734 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds