Wall clock time and date at job start Wed Apr 1 2020 00:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47293 * 239.99931 * 3 2 1 5 5 H 1.48502 * 109.46697 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47104 * 119.99668 * 3 2 1 7 7 C 1.38811 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00358 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00138 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00366 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47479 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47088 * 179.97438 * 11 10 9 13 13 C 1.46506 * 119.99537 * 269.99330 * 12 11 10 14 14 C 1.52998 * 109.47320 * 269.99999 * 13 12 11 15 15 O 1.42902 * 109.46765 * 65.00041 * 14 13 12 16 16 C 1.34777 * 120.00199 * 89.99979 * 12 11 10 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 12 11 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 12 11 19 19 O 1.42899 * 109.46876 * 179.72354 * 18 16 12 20 20 C 1.35897 * 116.99793 * 179.97438 * 19 18 16 21 21 C 1.38769 * 120.04825 * 359.72173 * 20 19 18 22 22 C 1.38132 * 119.96714 * 179.74971 * 21 20 19 23 23 C 1.38266 * 120.06777 * 0.54733 * 22 21 20 24 24 C 1.38363 * 120.10278 * 359.70811 * 23 22 21 25 25 Cl 1.73591 * 119.98844 * 180.02562 * 24 23 22 26 26 C 1.38289 * 120.02324 * 0.02562 * 24 23 22 27 27 H 0.96999 * 119.99574 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99696 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.46920 * 59.99310 * 10 9 7 30 30 H 1.09005 * 109.46881 * 299.99657 * 10 9 7 31 31 H 1.09001 * 109.46980 * 59.99563 * 11 10 9 32 32 H 1.09005 * 109.46685 * 299.99656 * 11 10 9 33 33 H 1.08994 * 109.46996 * 30.00327 * 13 12 11 34 34 H 1.09001 * 109.46578 * 150.00190 * 13 12 11 35 35 H 1.08993 * 109.47026 * 185.00460 * 14 13 12 36 36 H 1.08999 * 109.47226 * 305.00909 * 14 13 12 37 37 H 0.96701 * 113.99649 * 179.97438 * 15 14 13 38 38 H 1.09004 * 109.46965 * 299.72211 * 18 16 12 39 39 H 1.08994 * 109.46990 * 59.72065 * 18 16 12 40 40 H 1.07991 * 120.01401 * 0.02562 * 21 20 19 41 41 H 1.07997 * 119.96222 * 180.25423 * 22 21 20 42 42 H 1.07999 * 119.94735 * 179.72548 * 23 22 21 43 43 H 1.08002 * 120.02770 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0008 12 7 1.7964 -6.0884 0.0013 13 6 2.1636 -6.7227 -1.2673 14 6 1.0422 -7.6648 -1.7098 15 8 -0.1341 -6.9047 -1.9937 16 6 2.1324 -6.6721 1.1687 17 8 1.8288 -6.1468 2.2188 18 6 2.8914 -7.9741 1.1692 19 8 3.1330 -8.3840 2.5166 20 6 3.8113 -9.5480 2.6951 21 6 4.2306 -10.2836 1.5956 22 6 4.9244 -11.4639 1.7789 23 6 5.1917 -11.9190 3.0569 24 6 4.7704 -11.1906 4.1552 25 17 5.1082 -11.7644 5.7584 26 6 4.0803 -10.0056 3.9763 27 1 -0.4849 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6841 -3.7141 0.8921 30 1 2.6854 -3.7149 -0.8879 31 1 0.4382 -4.7622 -0.8899 32 1 0.4362 -4.7618 0.8901 33 1 2.3146 -5.9556 -2.0267 34 1 3.0847 -7.2906 -1.1363 35 1 1.3521 -8.2029 -2.6055 36 1 0.8306 -8.3775 -0.9127 37 1 -0.8874 -7.4386 -2.2812 38 1 2.3048 -8.7368 0.6570 39 1 3.8425 -7.8403 0.6539 40 1 4.0184 -9.9311 0.5971 41 1 5.2542 -12.0341 0.9232 42 1 5.7305 -12.8443 3.1980 43 1 3.7517 -9.4368 4.8336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484499708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:03 Heat of formation + Delta-G solvation = -78.271410 kcal Electronic energy + Delta-G solvation = -26739.268607 eV Core-core repulsion = 22618.810648 eV Total energy + Delta-G solvation = -4120.457959 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.84374 -39.77848 -38.01068 -37.26364 -36.62716 -35.60596 -34.36094 -31.81370 -31.39341 -30.51040 -29.62925 -28.96720 -26.89130 -23.78772 -23.40527 -23.18425 -22.54621 -21.41686 -19.23477 -18.98230 -17.85588 -17.26548 -17.07616 -16.73931 -16.64162 -16.21538 -15.83660 -15.28486 -15.06573 -14.70466 -14.44626 -14.16377 -13.95960 -13.81439 -13.57966 -13.47883 -13.15027 -13.03606 -12.76191 -12.53369 -12.32270 -12.21202 -11.74598 -11.67188 -11.32251 -11.30822 -11.19620 -10.91498 -10.86533 -10.61190 -10.30122 -10.11181 -9.81511 -9.65551 -9.31240 -8.82279 -8.71899 -8.60269 -6.88331 -5.71233 -3.00384 0.65615 0.88708 1.60559 2.35058 2.51492 3.16755 3.28053 3.48124 3.52084 3.53635 3.93249 4.11289 4.29957 4.44110 4.54092 4.58282 4.64534 4.65298 4.79837 4.80558 4.90176 4.94910 4.99771 5.13774 5.34934 5.48150 5.57918 5.67483 5.74359 5.81273 5.84298 5.90620 6.03401 6.07496 6.21643 6.52086 6.74404 6.88734 6.94808 7.32874 7.44640 7.73818 8.13148 8.47210 9.57927 10.14673 10.49840 11.51589 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.002103 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.254340 B =13308.424187 C =14742.829292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.729 5.729 10 C 0.142 3.858 11 C 0.114 3.886 12 N -0.594 5.594 13 C 0.101 3.899 14 C 0.057 3.943 15 O -0.560 6.560 16 C 0.510 3.490 17 O -0.505 6.505 18 C 0.042 3.958 19 O -0.282 6.282 20 C 0.147 3.853 21 C -0.209 4.209 22 C -0.066 4.066 23 C -0.152 4.152 24 C 0.005 3.995 25 Cl -0.062 7.062 26 C -0.142 4.142 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.021 0.979 30 H 0.017 0.983 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.098 0.902 34 H 0.089 0.911 35 H 0.057 0.943 36 H 0.044 0.956 37 H 0.379 0.621 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.135 0.865 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.251 -30.935 -1.461 32.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.374 5.374 10 C 0.013 3.987 11 C -0.008 4.008 12 N -0.329 5.329 13 C -0.022 4.022 14 C -0.022 4.022 15 O -0.365 6.365 16 C 0.295 3.705 17 O -0.378 6.378 18 C -0.037 4.037 19 O -0.194 6.194 20 C 0.101 3.899 21 C -0.227 4.227 22 C -0.084 4.084 23 C -0.171 4.171 24 C -0.022 4.022 25 Cl -0.033 7.033 26 C -0.162 4.162 27 H 0.065 0.935 28 H 0.218 0.782 29 H 0.039 0.961 30 H 0.034 0.966 31 H 0.109 0.891 32 H 0.101 0.899 33 H 0.117 0.883 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.226 0.774 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.153 0.847 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 8.547 -29.921 -0.410 31.120 hybrid contribution -0.045 0.244 -0.379 0.452 sum 8.502 -29.677 -0.789 30.881 Atomic orbital electron populations 1.69657 1.05081 1.25750 1.57671 1.24753 0.95569 0.97691 1.03022 0.86234 0.78485 0.83441 0.77821 1.21297 1.21657 1.21255 1.19156 0.90954 0.84007 1.42803 0.91292 1.42184 1.05888 0.99713 1.89592 1.20919 0.93946 0.85872 0.97915 1.21771 0.94498 0.80498 1.04027 1.47706 1.57167 1.23650 1.04388 1.21784 0.95681 0.97711 0.87058 1.22698 0.87115 0.93632 0.98802 1.86604 1.22392 1.37469 1.90070 1.19892 0.80611 0.85551 0.84438 1.90806 1.52639 1.63828 1.30558 1.22672 1.01225 0.96414 0.83402 1.86208 1.70211 1.35834 1.27168 1.18834 0.91897 0.85675 0.93537 1.21383 1.04993 0.98020 0.98350 1.20891 0.95821 0.94931 0.96744 1.20971 1.03664 1.01299 0.91117 1.20575 0.99940 0.95086 0.86559 1.98389 1.93822 1.88352 1.22699 1.20257 1.03020 0.96641 0.96250 0.93457 0.78196 0.96109 0.96554 0.89115 0.89884 0.88320 0.89265 0.92511 0.93828 0.77446 0.89127 0.88783 0.84783 0.84616 0.84744 0.83745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.03 13.06 55.49 0.72 -28.31 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 23.06 29.55 -169.99 -5.02 18.04 16 4 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 5 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 6 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 9 N -0.73 -19.53 5.60 -59.91 -0.34 -19.87 16 10 C 0.14 3.08 6.58 -4.04 -0.03 3.05 16 11 C 0.11 2.03 5.34 -4.04 -0.02 2.00 16 12 N -0.59 -8.11 2.44 -173.68 -0.42 -8.53 16 13 C 0.10 0.90 5.62 -4.04 -0.02 0.88 16 14 C 0.06 0.40 7.39 37.16 0.27 0.68 16 15 O -0.56 -5.45 12.48 -35.23 -0.44 -5.89 16 16 C 0.51 7.51 7.75 -10.98 -0.09 7.43 16 17 O -0.50 -10.17 16.08 -14.35 -0.23 -10.40 16 18 C 0.04 0.41 3.77 36.01 0.14 0.54 16 19 O -0.28 -3.54 9.67 -39.33 -0.38 -3.92 16 20 C 0.15 1.49 6.69 -39.22 -0.26 1.23 16 21 C -0.21 -1.51 9.04 -39.42 -0.36 -1.86 16 22 C -0.07 -0.40 10.04 -39.61 -0.40 -0.80 16 23 C -0.15 -1.07 9.83 -39.53 -0.39 -1.46 16 24 C 0.01 0.05 6.32 -39.52 -0.25 -0.20 16 25 Cl -0.06 -0.52 28.95 -51.86 -1.50 -2.02 16 26 C -0.14 -1.44 9.77 -39.40 -0.38 -1.83 16 27 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 28 H 0.38 10.73 7.67 -40.82 -0.31 10.41 16 29 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 1.59 7.11 -51.93 -0.37 1.22 16 32 H 0.08 1.67 7.42 -51.93 -0.39 1.28 16 33 H 0.10 0.96 8.07 -51.93 -0.42 0.54 16 34 H 0.09 0.47 6.43 -51.93 -0.33 0.14 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.04 0.28 7.32 -51.93 -0.38 -0.10 16 37 H 0.38 2.02 9.12 45.56 0.42 2.44 16 38 H 0.09 0.60 6.80 -51.93 -0.35 0.24 16 39 H 0.09 0.66 6.93 -51.93 -0.36 0.30 16 40 H 0.13 0.62 6.30 -52.49 -0.33 0.29 16 41 H 0.14 0.45 8.06 -52.49 -0.42 0.02 16 42 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 43 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 380.70 15.07 5.74 5.74 Total: -1.00 -37.92 380.70 -8.82 -46.74 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -4.91 Total: 6.41 kcal Atomic # 6 Polarization: 4.05 SS G_CDS: -2.03 Total: 2.02 kcal Atomic # 7 Polarization: -56.68 SS G_CDS: -0.03 Total: -56.71 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -1.05 Total: -20.21 kcal Atomic # 14 Polarization: 23.06 SS G_CDS: -5.02 Total: 18.04 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.92 -8.82 -46.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484499708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.533 kcal (2) G-P(sol) polarization free energy of solvation -37.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds