Wall clock time and date at job start Wed Apr 1 2020 00:09:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00201 * 2 1 4 4 H 1.48500 * 109.47293 * 239.99931 * 3 2 1 5 5 H 1.48502 * 109.46697 * 0.02562 * 3 2 1 6 6 H 1.48496 * 109.47104 * 119.99668 * 3 2 1 7 7 C 1.38811 * 120.00038 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00358 * 179.97438 * 7 2 1 9 9 N 1.36935 * 120.00138 * 0.02562 * 7 2 1 10 10 C 1.46499 * 120.00366 * 180.02562 * 9 7 2 11 11 C 1.53002 * 109.47479 * 180.02562 * 10 9 7 12 12 N 1.46499 * 109.47088 * 179.97438 * 11 10 9 13 13 C 1.46506 * 119.99537 * 269.99330 * 12 11 10 14 14 C 1.52998 * 109.47320 * 269.99999 * 13 12 11 15 15 O 1.42902 * 109.46765 * 65.00041 * 14 13 12 16 16 C 1.34777 * 120.00199 * 89.99979 * 12 11 10 17 17 O 1.21283 * 119.99750 * 359.97438 * 16 12 11 18 18 C 1.50702 * 119.99928 * 180.27479 * 16 12 11 19 19 O 1.42899 * 109.46876 * 179.72354 * 18 16 12 20 20 C 1.35897 * 116.99793 * 179.97438 * 19 18 16 21 21 C 1.38769 * 120.04825 * 359.72173 * 20 19 18 22 22 C 1.38132 * 119.96714 * 179.74971 * 21 20 19 23 23 C 1.38266 * 120.06777 * 0.54733 * 22 21 20 24 24 C 1.38363 * 120.10278 * 359.70811 * 23 22 21 25 25 Cl 1.73591 * 119.98844 * 180.02562 * 24 23 22 26 26 C 1.38289 * 120.02324 * 0.02562 * 24 23 22 27 27 H 0.96999 * 119.99574 * 0.02562 * 1 2 3 28 28 H 0.97004 * 119.99696 * 359.97438 * 9 7 2 29 29 H 1.08999 * 109.46920 * 59.99310 * 10 9 7 30 30 H 1.09005 * 109.46881 * 299.99657 * 10 9 7 31 31 H 1.09001 * 109.46980 * 59.99563 * 11 10 9 32 32 H 1.09005 * 109.46685 * 299.99656 * 11 10 9 33 33 H 1.08994 * 109.46996 * 30.00327 * 13 12 11 34 34 H 1.09001 * 109.46578 * 150.00190 * 13 12 11 35 35 H 1.08993 * 109.47026 * 185.00460 * 14 13 12 36 36 H 1.08999 * 109.47226 * 305.00909 * 14 13 12 37 37 H 0.96701 * 113.99649 * 179.97438 * 15 14 13 38 38 H 1.09004 * 109.46965 * 299.72211 * 18 16 12 39 39 H 1.08994 * 109.46990 * 59.72065 * 18 16 12 40 40 H 1.07991 * 120.01401 * 0.02562 * 21 20 19 41 41 H 1.07997 * 119.96222 * 180.25423 * 22 21 20 42 42 H 1.07999 * 119.94735 * 179.72548 * 23 22 21 43 43 H 1.08002 * 120.02770 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2852 2.7464 0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2022 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6568 0.0017 11 6 1.0639 -4.8198 0.0008 12 7 1.7964 -6.0884 0.0013 13 6 2.1636 -6.7227 -1.2673 14 6 1.0422 -7.6648 -1.7098 15 8 -0.1341 -6.9047 -1.9937 16 6 2.1324 -6.6721 1.1687 17 8 1.8288 -6.1468 2.2188 18 6 2.8914 -7.9741 1.1692 19 8 3.1330 -8.3840 2.5166 20 6 3.8113 -9.5480 2.6951 21 6 4.2306 -10.2836 1.5956 22 6 4.9244 -11.4639 1.7789 23 6 5.1917 -11.9190 3.0569 24 6 4.7704 -11.1906 4.1552 25 17 5.1082 -11.7644 5.7584 26 6 4.0803 -10.0056 3.9763 27 1 -0.4849 0.8401 -0.0004 28 1 0.3556 -2.3880 0.0005 29 1 2.6841 -3.7141 0.8921 30 1 2.6854 -3.7149 -0.8879 31 1 0.4382 -4.7622 -0.8899 32 1 0.4362 -4.7618 0.8901 33 1 2.3146 -5.9556 -2.0267 34 1 3.0847 -7.2906 -1.1363 35 1 1.3521 -8.2029 -2.6055 36 1 0.8306 -8.3775 -0.9127 37 1 -0.8874 -7.4386 -2.2812 38 1 2.3048 -8.7368 0.6570 39 1 3.8425 -7.8403 0.6539 40 1 4.0184 -9.9311 0.5971 41 1 5.2542 -12.0341 0.9232 42 1 5.7305 -12.8443 3.1980 43 1 3.7517 -9.4368 4.8336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484499708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:03 Heat of formation + Delta-G solvation = -106.507121 kcal Electronic energy + Delta-G solvation = -26740.492999 eV Core-core repulsion = 22618.810648 eV Total energy + Delta-G solvation = -4121.682351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.67144 -40.70533 -38.71885 -38.08238 -37.27840 -37.04411 -35.93601 -33.58113 -32.15622 -31.28718 -30.79854 -29.81462 -28.30515 -25.60490 -24.12857 -23.82937 -23.55283 -22.86327 -20.34110 -19.69312 -19.16792 -18.54390 -18.04419 -17.63018 -17.44912 -16.96144 -16.83628 -16.44859 -16.05730 -15.93505 -15.47523 -15.30870 -15.13179 -15.07156 -14.66199 -14.61902 -14.32968 -14.23712 -13.74488 -13.40943 -13.11749 -12.96229 -12.86041 -12.81048 -12.68212 -12.50320 -12.30579 -12.18884 -12.16155 -11.94136 -11.90350 -11.88288 -10.99374 -10.98427 -10.81062 -9.90466 -9.79183 -9.33568 -9.08408 -7.98496 -5.29914 0.08681 0.30124 0.97025 1.41240 1.44797 1.47741 1.49627 1.55880 2.41118 2.56340 2.60296 3.26419 3.34273 3.43614 3.72959 3.87204 3.96943 4.04677 4.05885 4.12224 4.12636 4.14691 4.24938 4.30441 4.39433 4.41851 4.51338 4.59380 4.67555 4.77328 4.89125 5.03561 5.06338 5.11864 5.25244 5.32672 5.39061 5.47071 5.55278 6.18450 6.22496 6.35417 6.99924 7.03835 7.28072 7.99894 8.25301 9.24736 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.013768 B = 0.002103 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2033.254340 B =13308.424187 C =14742.829292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.075 4.075 3 Si 0.981 3.019 4 H -0.272 1.272 5 H -0.291 1.291 6 H -0.281 1.281 7 C -0.253 4.253 8 H 0.074 0.926 9 N -0.743 5.743 10 C 0.149 3.851 11 C 0.133 3.867 12 N -0.590 5.590 13 C 0.089 3.911 14 C 0.055 3.945 15 O -0.596 6.596 16 C 0.501 3.499 17 O -0.576 6.576 18 C 0.049 3.951 19 O -0.321 6.321 20 C 0.125 3.875 21 C -0.200 4.200 22 C -0.057 4.057 23 C -0.151 4.151 24 C -0.007 4.007 25 Cl -0.068 7.068 26 C -0.169 4.169 27 H 0.254 0.746 28 H 0.375 0.625 29 H -0.002 1.002 30 H 0.033 0.967 31 H 0.095 0.905 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.136 0.864 35 H 0.095 0.905 36 H 0.055 0.945 37 H 0.395 0.605 38 H 0.133 0.867 39 H 0.132 0.868 40 H 0.169 0.831 41 H 0.175 0.825 42 H 0.155 0.845 43 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.354 -33.474 -4.210 35.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.268 4.268 3 Si 0.808 3.192 4 H -0.197 1.197 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.384 4.384 8 H 0.092 0.908 9 N -0.386 5.386 10 C 0.021 3.979 11 C 0.010 3.990 12 N -0.323 5.323 13 C -0.033 4.033 14 C -0.023 4.023 15 O -0.405 6.405 16 C 0.289 3.711 17 O -0.454 6.454 18 C -0.029 4.029 19 O -0.235 6.235 20 C 0.080 3.920 21 C -0.218 4.218 22 C -0.075 4.075 23 C -0.169 4.169 24 C -0.034 4.034 25 Cl -0.039 7.039 26 C -0.189 4.189 27 H 0.062 0.938 28 H 0.206 0.794 29 H 0.016 0.984 30 H 0.050 0.950 31 H 0.113 0.887 32 H 0.069 0.931 33 H 0.107 0.893 34 H 0.154 0.846 35 H 0.113 0.887 36 H 0.073 0.927 37 H 0.244 0.756 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.186 0.814 41 H 0.193 0.807 42 H 0.172 0.828 43 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 10.687 -32.534 -3.211 34.394 hybrid contribution -0.671 0.928 0.454 1.231 sum 10.016 -31.606 -2.758 33.269 Atomic orbital electron populations 1.69827 1.06681 1.26415 1.58881 1.25679 0.96558 1.01382 1.03145 0.85115 0.77189 0.78567 0.78279 1.19731 1.21724 1.20691 1.19567 0.91436 0.85195 1.42243 0.90802 1.42391 1.05654 1.01018 1.89579 1.20970 0.94347 0.85422 0.97162 1.21240 0.93522 0.81713 1.02574 1.47755 1.56082 1.22033 1.06417 1.22304 0.98569 0.98200 0.84192 1.22836 0.85655 0.93002 1.00806 1.86550 1.24005 1.39509 1.90414 1.20909 0.79824 0.86906 0.83412 1.90774 1.55503 1.66073 1.33094 1.22793 1.02698 0.94153 0.83215 1.86148 1.71243 1.37294 1.28794 1.19010 0.92990 0.85657 0.94383 1.21764 1.03686 0.97628 0.98747 1.21370 0.94278 0.94471 0.97362 1.21337 1.02919 1.01607 0.91057 1.20706 1.00545 0.95124 0.86987 1.98381 1.93857 1.88291 1.23413 1.20287 1.04611 0.97595 0.96369 0.93765 0.79368 0.98365 0.94957 0.88661 0.93108 0.89260 0.84616 0.88737 0.92666 0.75571 0.84963 0.85061 0.81356 0.80731 0.82781 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.53 13.06 21.65 0.28 -61.25 16 2 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 3 Si 0.98 47.74 29.55 68.60 2.03 49.77 16 4 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 5 H -0.29 -14.10 7.11 99.48 0.71 -13.39 16 6 H -0.28 -13.33 7.11 99.48 0.71 -12.62 16 7 C -0.25 -15.03 9.99 84.03 0.84 -14.19 16 8 H 0.07 4.21 7.83 -2.91 -0.02 4.19 16 9 N -0.74 -41.11 5.60 -343.45 -1.92 -43.03 16 10 C 0.15 6.62 6.58 86.38 0.57 7.19 16 11 C 0.13 4.91 5.34 86.38 0.46 5.37 16 12 N -0.59 -15.59 2.44 -821.80 -2.00 -17.59 16 13 C 0.09 1.27 5.62 86.38 0.49 1.76 16 14 C 0.06 0.57 7.39 71.98 0.53 1.10 16 15 O -0.60 -10.50 12.48 -148.98 -1.86 -12.36 16 16 C 0.50 14.62 7.75 87.66 0.68 15.30 16 17 O -0.58 -24.57 16.08 16.00 0.26 -24.31 16 18 C 0.05 0.82 3.77 71.24 0.27 1.09 16 19 O -0.32 -7.90 9.67 -73.35 -0.71 -8.61 16 20 C 0.13 2.38 6.69 22.50 0.15 2.53 16 21 C -0.20 -2.05 9.04 22.37 0.20 -1.84 16 22 C -0.06 -0.43 10.04 22.25 0.22 -0.21 16 23 C -0.15 -1.70 9.83 22.31 0.22 -1.48 16 24 C -0.01 -0.12 6.32 22.31 0.14 0.02 16 25 Cl -0.07 -1.16 28.95 -2.72 -0.08 -1.24 16 26 C -0.17 -3.52 9.77 22.39 0.22 -3.30 16 27 H 0.25 15.51 8.31 -92.71 -0.77 14.74 16 28 H 0.37 21.83 7.67 -92.71 -0.71 21.12 16 29 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 30 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 31 H 0.10 3.41 7.11 -2.39 -0.02 3.40 16 32 H 0.05 2.19 7.42 -2.38 -0.02 2.17 16 33 H 0.09 1.50 8.07 -2.39 -0.02 1.48 16 34 H 0.14 0.66 6.43 -2.39 -0.02 0.64 16 35 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 36 H 0.06 0.46 7.32 -2.39 -0.02 0.44 16 37 H 0.39 3.53 9.12 -74.06 -0.68 2.86 16 38 H 0.13 1.08 6.80 -2.38 -0.02 1.07 16 39 H 0.13 1.19 6.93 -2.39 -0.02 1.18 16 40 H 0.17 0.46 6.30 -2.91 -0.02 0.44 16 41 H 0.18 0.01 8.06 -2.91 -0.02 -0.01 16 42 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 43 H 0.12 2.91 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -89.08 380.70 1.12 -87.96 By element: Atomic # 1 Polarization: 21.72 SS G_CDS: -0.33 Total: 21.39 kcal Atomic # 6 Polarization: 3.82 SS G_CDS: 5.46 Total: 9.28 kcal Atomic # 7 Polarization: -118.23 SS G_CDS: -3.64 Total: -121.87 kcal Atomic # 8 Polarization: -42.97 SS G_CDS: -2.31 Total: -45.28 kcal Atomic # 14 Polarization: 47.74 SS G_CDS: 2.03 Total: 49.77 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -89.08 1.12 -87.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484499708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.550 kcal (2) G-P(sol) polarization free energy of solvation -89.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.632 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds