Wall clock time and date at job start Wed Apr 1 2020 01:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00245 * 2 1 4 4 H 1.48502 * 109.46856 * 355.30692 * 3 2 1 5 5 H 1.48492 * 109.47222 * 115.31138 * 3 2 1 6 6 H 1.48506 * 109.46692 * 235.31134 * 3 2 1 7 7 C 1.38813 * 119.99700 * 180.27031 * 2 1 3 8 8 H 1.07998 * 120.00084 * 352.38585 * 7 2 1 9 9 N 1.36935 * 120.00005 * 172.39403 * 7 2 1 10 10 C 1.47066 * 136.05943 * 6.53411 * 9 7 2 11 11 C 1.53745 * 87.88938 * 152.96737 * 10 9 7 12 12 O 1.42908 * 114.08428 * 139.77917 * 11 10 9 13 13 C 1.53000 * 114.39993 * 272.67796 * 11 10 9 14 14 N 1.46503 * 109.46955 * 278.58784 * 13 11 10 15 15 C 1.34779 * 119.99786 * 179.97438 * 14 13 11 16 16 O 1.21274 * 120.00033 * 0.02562 * 15 14 13 17 17 C 1.50698 * 119.99587 * 179.97438 * 15 14 13 18 18 O 1.42899 * 109.46759 * 180.02562 * 17 15 14 19 19 C 1.35946 * 116.99841 * 180.02562 * 18 17 15 20 20 C 1.38729 * 120.01967 * 179.97438 * 19 18 17 21 21 C 1.38162 * 120.01810 * 179.97438 * 20 19 18 22 22 C 1.38410 * 120.04924 * 0.02562 * 21 20 19 23 23 F 1.35102 * 119.98070 * 179.97438 * 22 21 20 24 24 C 1.38648 * 120.04393 * 359.97438 * 22 21 20 25 25 F 1.35097 * 120.01005 * 180.02562 * 24 22 21 26 26 C 1.38362 * 119.98474 * 359.73278 * 24 22 21 27 27 C 1.47066 * 136.05754 * 186.91383 * 9 7 2 28 28 H 0.97000 * 120.00276 * 185.10857 * 1 2 3 29 29 H 1.09001 * 113.46890 * 267.70643 * 10 9 7 30 30 H 1.09003 * 113.46343 * 38.13625 * 10 9 7 31 31 H 0.96700 * 113.99852 * 86.56799 * 12 11 10 32 32 H 1.08998 * 109.46930 * 38.58544 * 13 11 10 33 33 H 1.08993 * 109.47267 * 158.58419 * 13 11 10 34 34 H 0.97000 * 120.00052 * 359.97438 * 14 13 11 35 35 H 1.08998 * 109.47307 * 300.00221 * 17 15 14 36 36 H 1.08993 * 109.47428 * 60.00427 * 17 15 14 37 37 H 1.08005 * 119.99130 * 359.97348 * 20 19 18 38 38 H 1.07993 * 119.98074 * 180.02562 * 21 20 19 39 39 H 1.08000 * 120.02779 * 180.29464 * 26 24 22 40 40 H 1.09001 * 113.46935 * 321.86111 * 27 9 7 41 41 H 1.09004 * 113.46453 * 92.23850 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 1.2893 2.7441 -0.1146 5 1 3.0162 1.7471 1.2656 6 1 3.1879 1.6478 -1.1513 7 6 2.0102 -1.2022 -0.0057 8 1 1.4773 -2.1339 0.1139 9 7 3.3705 -1.2067 -0.1627 10 6 4.4320 -0.1911 -0.2312 11 6 5.4052 -1.2541 0.3043 12 8 6.6927 -1.2311 -0.3155 13 6 5.4666 -1.3432 1.8304 14 7 6.3505 -0.2945 2.3456 15 6 6.5574 -0.1793 3.6724 16 8 6.0123 -0.9440 4.4398 17 6 7.4671 0.8990 4.2022 18 8 7.5244 0.8159 5.6276 19 6 8.3070 1.7246 6.2678 20 6 8.4079 1.7014 7.6512 21 6 9.2038 2.6245 8.3018 22 6 9.9007 3.5736 7.5744 23 9 10.6782 4.4760 8.2120 24 6 9.8016 3.5989 6.1917 25 9 10.4826 4.5253 5.4823 26 6 9.0098 2.6714 5.5381 27 6 4.4122 -2.2290 -0.3436 28 1 -0.4850 -0.8367 0.0748 29 1 4.6585 0.1322 -1.2473 30 1 4.2790 0.6435 0.4530 31 1 7.3158 -0.6161 0.0950 32 1 4.4664 -1.2102 2.2427 33 1 5.8529 -2.3197 2.1221 34 1 6.7868 0.3168 1.7318 35 1 8.4673 0.7654 3.7903 36 1 7.0814 1.8757 3.9101 37 1 7.8641 0.9614 8.2199 38 1 9.2822 2.6056 9.3787 39 1 8.9359 2.6875 4.4607 40 1 4.2424 -3.1307 0.2449 41 1 4.6327 -2.4437 -1.3893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716947607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:44:13 Heat of formation + Delta-G solvation = -106.430376 kcal Electronic energy + Delta-G solvation = -28903.590933 eV Core-core repulsion = 24230.115230 eV Total energy + Delta-G solvation = -4673.475704 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 342.122 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.87631 -48.93757 -40.91398 -40.05743 -39.02727 -37.49142 -35.51804 -34.38250 -32.36509 -31.52203 -30.72046 -29.34894 -28.01668 -25.97106 -25.63379 -23.79129 -23.02745 -21.89409 -20.94371 -19.43434 -19.27956 -18.45430 -18.00812 -17.57411 -17.39095 -17.03508 -16.94149 -16.57154 -16.39319 -15.95350 -15.35579 -15.31752 -15.06929 -14.96670 -14.66945 -14.60596 -14.13762 -13.94929 -13.59676 -13.47541 -13.26783 -13.15048 -12.73399 -12.50571 -12.28546 -12.20615 -11.83958 -11.77896 -11.36417 -11.19105 -10.80545 -10.47395 -10.23231 -10.09938 -9.67408 -9.34679 -9.31195 -9.04276 -8.98028 -8.72114 -7.29914 -6.42320 -3.35264 0.38728 0.48469 2.05151 2.32100 2.82114 3.16597 3.27543 3.32928 3.33867 3.54337 3.75339 4.01196 4.11225 4.22545 4.31094 4.39855 4.48739 4.49936 4.55255 4.63352 4.67247 4.85635 4.89778 5.14276 5.29014 5.38581 5.46574 5.52257 5.54757 5.89806 5.98788 6.02858 6.05139 6.13981 6.18420 6.23044 6.49914 6.63589 6.92172 7.14672 7.63308 7.92488 8.14170 8.86747 9.37713 10.20595 11.10297 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.015842 B = 0.002277 C = 0.002206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1767.047338 B =12295.292268 C =12687.049482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C -0.022 4.022 3 Si 1.070 2.930 4 H -0.293 1.293 5 H -0.295 1.295 6 H -0.286 1.286 7 C -0.306 4.306 8 H 0.087 0.913 9 N -0.619 5.619 10 C 0.079 3.921 11 C 0.064 3.936 12 O -0.545 6.545 13 C 0.125 3.875 14 N -0.724 5.724 15 C 0.517 3.483 16 O -0.509 6.509 17 C 0.036 3.964 18 O -0.276 6.276 19 C 0.156 3.844 20 C -0.128 4.128 21 C -0.082 4.082 22 C 0.026 3.974 23 F -0.130 7.130 24 C 0.112 3.888 25 F -0.124 7.124 26 C -0.224 4.224 27 C 0.144 3.856 28 H 0.263 0.737 29 H 0.056 0.944 30 H 0.052 0.948 31 H 0.364 0.636 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.397 0.603 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.153 0.847 38 H 0.155 0.845 39 H 0.152 0.848 40 H 0.055 0.945 41 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.348 5.622 12.378 27.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.222 4.222 3 Si 0.903 3.097 4 H -0.220 1.220 5 H -0.223 1.223 6 H -0.213 1.213 7 C -0.432 4.432 8 H 0.104 0.896 9 N -0.350 5.350 10 C -0.047 4.047 11 C 0.021 3.979 12 O -0.348 6.348 13 C 0.002 3.998 14 N -0.379 5.379 15 C 0.301 3.699 16 O -0.383 6.383 17 C -0.043 4.043 18 O -0.188 6.188 19 C 0.109 3.891 20 C -0.147 4.147 21 C -0.101 4.101 22 C 0.006 3.994 23 F -0.109 7.109 24 C 0.091 3.909 25 F -0.103 7.103 26 C -0.244 4.244 27 C 0.017 3.983 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.210 0.790 32 H 0.116 0.884 33 H 0.097 0.903 34 H 0.231 0.769 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.171 0.829 38 H 0.173 0.827 39 H 0.170 0.830 40 H 0.074 0.926 41 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 22.102 6.133 12.590 26.165 hybrid contribution 0.994 -0.390 -0.290 1.107 sum 23.096 5.742 12.300 26.790 Atomic orbital electron populations 1.70912 1.05271 1.29664 1.51264 1.25746 0.96470 1.00958 0.98985 0.83697 0.73970 0.76140 0.75910 1.22044 1.22295 1.21316 1.20096 0.77900 0.95977 1.49196 0.89552 1.45691 1.02140 1.01663 1.85458 1.23469 0.88092 0.93966 0.99201 1.23740 0.82182 1.01412 0.90519 1.86635 1.23224 1.66093 1.58832 1.21643 0.95836 0.90363 0.91911 1.45736 1.49845 1.35757 1.06542 1.19797 0.82336 0.85216 0.82578 1.90795 1.48297 1.42941 1.56232 1.22620 1.01194 1.00125 0.80332 1.86239 1.62646 1.50492 1.19406 1.18773 0.89983 0.88281 0.92057 1.20422 1.01744 1.01393 0.91105 1.20911 0.95100 0.92862 1.01237 1.17562 0.99177 0.93901 0.88776 1.91531 1.72557 1.65265 1.81533 1.17323 0.95644 0.90046 0.87876 1.91554 1.77427 1.63236 1.78041 1.21136 1.02947 0.98438 1.01843 1.22272 0.84891 0.92837 0.98295 0.92692 0.92623 0.93006 0.78990 0.88355 0.90272 0.76859 0.88335 0.88238 0.82935 0.82717 0.82990 0.92635 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.83 13.70 55.49 0.76 -28.07 16 2 C -0.02 -0.65 5.50 -17.43 -0.10 -0.74 16 3 Si 1.07 25.84 25.13 -169.99 -4.27 21.56 16 4 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 5 H -0.29 -6.64 6.63 56.52 0.37 -6.26 16 6 H -0.29 -6.38 6.13 56.52 0.35 -6.04 16 7 C -0.31 -8.53 11.08 -15.06 -0.17 -8.70 16 8 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 9 N -0.62 -14.48 3.47 -184.61 -0.64 -15.12 16 10 C 0.08 1.54 5.12 -8.39 -0.04 1.49 16 11 C 0.06 1.00 1.74 -89.98 -0.16 0.85 16 12 O -0.54 -7.10 13.56 -35.23 -0.48 -7.58 16 13 C 0.13 1.86 5.33 -4.04 -0.02 1.84 16 14 N -0.72 -8.02 5.32 -60.30 -0.32 -8.34 16 15 C 0.52 6.33 7.91 -10.99 -0.09 6.24 16 16 O -0.51 -8.78 16.50 -14.35 -0.24 -9.02 16 17 C 0.04 0.29 5.22 36.00 0.19 0.47 16 18 O -0.28 -2.85 9.67 -39.48 -0.38 -3.23 16 19 C 0.16 1.31 6.68 -39.24 -0.26 1.04 16 20 C -0.13 -0.92 9.98 -39.43 -0.39 -1.31 16 21 C -0.08 -0.53 10.02 -39.55 -0.40 -0.93 16 22 C 0.03 0.22 7.30 -39.37 -0.29 -0.07 16 23 F -0.13 -1.25 17.18 2.25 0.04 -1.21 16 24 C 0.11 0.97 7.30 -39.38 -0.29 0.68 16 25 F -0.12 -1.20 17.18 2.25 0.04 -1.16 16 26 C -0.22 -1.66 9.01 -39.38 -0.35 -2.02 16 27 C 0.14 2.73 8.10 -8.52 -0.07 2.66 16 28 H 0.26 8.05 8.73 -40.82 -0.36 7.69 16 29 H 0.06 1.10 7.71 -51.93 -0.40 0.70 16 30 H 0.05 1.02 4.65 -51.93 -0.24 0.78 16 31 H 0.36 2.98 7.50 45.56 0.34 3.32 16 32 H 0.10 1.83 7.94 -51.93 -0.41 1.42 16 33 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.40 2.89 7.24 -40.82 -0.30 2.60 16 35 H 0.10 0.44 7.65 -51.93 -0.40 0.05 16 36 H 0.10 0.57 7.67 -51.93 -0.40 0.18 16 37 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 38 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.15 0.78 6.30 -52.49 -0.33 0.45 16 40 H 0.06 1.00 8.12 -51.93 -0.42 0.58 16 41 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -36.15 355.84 -6.47 -42.62 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -3.90 Total: 2.67 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: -2.43 Total: 1.51 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: -0.20 Total: -51.52 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -1.10 Total: -19.82 kcal Atomic # 9 Polarization: -2.45 SS G_CDS: 0.08 Total: -2.37 kcal Atomic # 14 Polarization: 25.84 SS G_CDS: -4.27 Total: 21.56 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.15 -6.47 -42.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716947607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.812 kcal (2) G-P(sol) polarization free energy of solvation -36.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds