Wall clock time and date at job start Wed Apr 1 2020 00:21:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99911 * 2 1 4 4 H 1.48497 * 109.47154 * 269.99847 * 3 2 1 5 5 H 1.48493 * 109.47010 * 30.00371 * 3 2 1 6 6 H 1.48502 * 109.46736 * 150.00068 * 3 2 1 7 7 C 1.37871 * 119.99684 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00205 * 179.72412 * 7 2 1 9 9 C 1.50706 * 120.00436 * 359.97438 * 7 2 1 10 10 N 1.46493 * 109.47128 * 179.72498 * 9 7 2 11 11 C 1.46497 * 120.00235 * 269.99530 * 10 9 7 12 12 C 1.53008 * 109.46926 * 90.00466 * 11 10 9 13 13 C 1.52995 * 117.49765 * 243.62387 * 12 11 10 14 14 C 1.52997 * 60.00108 * 252.51033 * 13 12 11 15 15 C 1.34783 * 120.00107 * 90.00402 * 10 9 7 16 16 O 1.21284 * 119.99626 * 359.97438 * 15 10 9 17 17 C 1.50696 * 120.00310 * 179.97438 * 15 10 9 18 18 N 1.46501 * 109.47035 * 179.97438 * 17 15 10 19 19 C 1.34952 * 126.03434 * 125.00051 * 18 17 15 20 20 C 1.35320 * 107.74373 * 179.97438 * 19 18 17 21 21 S 1.76194 * 126.03747 * 180.02562 * 20 19 18 22 22 N 1.65597 * 107.21976 * 89.99950 * 21 20 19 23 23 O 1.42105 * 106.40173 * 203.53890 * 21 20 19 24 24 O 1.42099 * 106.40688 * 336.45703 * 21 20 19 25 25 C 1.39874 * 107.91788 * 359.97438 * 20 19 18 26 26 N 1.30833 * 108.20464 * 359.74392 * 25 20 19 27 27 H 0.97004 * 120.00247 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 29 29 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 30 30 H 1.08998 * 109.47569 * 210.00215 * 11 10 9 31 31 H 1.08997 * 109.47185 * 330.00886 * 11 10 9 32 32 H 1.09004 * 115.54514 * 29.33287 * 12 11 10 33 33 H 1.08995 * 117.50145 * 359.97438 * 13 12 11 34 34 H 1.08999 * 117.49978 * 145.02090 * 13 12 11 35 35 H 1.09000 * 117.49824 * 252.51694 * 14 13 12 36 36 H 1.09002 * 117.50089 * 107.48886 * 14 13 12 37 37 H 1.08999 * 109.46989 * 299.99618 * 17 15 10 38 38 H 1.08997 * 109.47408 * 59.99531 * 17 15 10 39 39 H 1.07996 * 126.12955 * 359.95462 * 19 18 17 40 40 H 0.97001 * 120.00069 * 0.02562 * 22 21 20 41 41 H 0.97006 * 120.00154 * 179.97438 * 22 21 20 42 42 H 1.08001 * 125.89410 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 3.0844 -1.1941 -0.0050 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6126 -0.0078 11 6 2.6731 -4.1662 -1.2801 12 6 3.9333 -3.4215 -1.7255 13 6 3.8578 -2.6211 -3.0273 14 6 4.6485 -3.9300 -2.9788 15 6 2.6461 -4.1280 1.1561 16 8 2.2570 -3.6695 2.2094 17 6 3.6249 -5.2737 1.1487 18 7 3.9490 -5.6481 2.5275 19 6 3.8272 -6.8798 3.0653 20 6 4.2277 -6.8078 4.3558 21 16 4.2651 -8.1424 5.5055 22 7 5.7565 -8.8519 5.3847 23 8 4.2019 -7.5591 6.7998 24 8 3.3258 -9.1010 5.0385 25 6 4.6077 -5.4870 4.6154 26 7 4.4466 -4.7922 3.5186 27 1 -0.4851 0.8401 0.0004 28 1 0.6283 -2.5592 0.8921 29 1 0.6202 -2.5546 -0.8878 30 1 2.9020 -5.2243 -1.1536 31 1 1.8963 -4.0503 -2.0359 32 1 4.5504 -3.0193 -0.9220 33 1 2.9106 -2.6254 -3.5665 34 1 4.4253 -1.6920 -3.0804 35 1 5.7362 -3.8621 -3.0000 36 1 4.2213 -4.7952 -3.4860 37 1 3.1818 -6.1268 0.6349 38 1 4.5352 -4.9707 0.6314 39 1 3.4732 -7.7644 2.5568 40 1 6.4093 -8.5048 4.7567 41 1 5.9777 -9.6141 5.9425 42 1 4.9754 -5.1073 5.5573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267975085.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:21:38 Heat of formation + Delta-G solvation = 3.774666 kcal Electronic energy + Delta-G solvation = -27647.779852 eV Core-core repulsion = 23565.216135 eV Total energy + Delta-G solvation = -4082.563717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.46864 -39.29244 -37.21153 -37.11996 -35.83580 -34.57415 -33.55817 -33.33384 -32.55760 -30.61524 -28.78374 -27.34221 -25.98949 -23.14253 -22.17793 -22.12759 -21.42820 -20.73444 -19.58783 -18.99584 -18.19601 -17.50494 -17.01018 -16.75582 -16.57059 -15.77521 -15.56866 -15.47283 -14.99231 -14.90252 -14.54063 -14.45464 -13.91744 -13.80637 -13.22894 -12.76407 -12.69246 -12.50744 -12.24847 -12.16767 -12.08865 -12.00608 -11.72696 -11.52126 -11.33350 -11.31112 -10.99617 -10.70534 -10.66609 -10.62935 -10.37344 -10.08588 -9.93190 -9.73811 -9.64776 -9.48807 -9.00979 -8.47410 -7.88964 -6.08773 -4.12218 0.40847 1.38767 2.18671 2.30152 3.01836 3.20380 3.26505 3.34407 3.38473 3.57924 3.64156 3.97971 4.19176 4.39112 4.43101 4.59731 4.63106 4.88749 4.93078 4.99890 5.07753 5.22010 5.27158 5.36710 5.42266 5.51226 5.65147 5.70390 5.79018 5.85409 6.15174 6.28327 6.29619 6.43202 6.54752 6.80604 6.89364 7.29017 7.37972 7.40450 7.86734 8.13845 8.16662 8.71922 8.92338 9.52217 10.99882 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.014667 B = 0.002844 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.548882 B = 9844.167276 C =10889.283776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.061 3.939 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.285 1.285 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.058 0.942 9 C 0.250 3.750 10 N -0.590 5.590 11 C 0.141 3.859 12 C -0.161 4.161 13 C -0.160 4.160 14 C -0.189 4.189 15 C 0.493 3.507 16 O -0.507 6.507 17 C 0.099 3.901 18 N -0.335 5.335 19 C 0.177 3.823 20 C -0.817 4.817 21 S 2.739 3.261 22 N -1.254 6.254 23 O -0.967 6.967 24 O -0.974 6.974 25 C 0.120 3.880 26 N -0.248 5.248 27 H 0.263 0.737 28 H 0.043 0.957 29 H 0.034 0.966 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.104 0.896 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.124 0.876 38 H 0.119 0.881 39 H 0.193 0.807 40 H 0.415 0.585 41 H 0.417 0.583 42 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.204 -18.891 -0.632 23.057 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.141 4.141 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.076 0.924 9 C 0.131 3.869 10 N -0.322 5.322 11 C 0.017 3.983 12 C -0.180 4.180 13 C -0.197 4.197 14 C -0.227 4.227 15 C 0.276 3.724 16 O -0.381 6.381 17 C -0.026 4.026 18 N -0.111 5.111 19 C 0.022 3.978 20 C -0.917 4.917 21 S 2.826 3.174 22 N -0.927 5.927 23 O -0.957 6.957 24 O -0.963 6.963 25 C -0.071 4.071 26 N -0.065 5.065 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.052 0.948 30 H 0.084 0.916 31 H 0.101 0.899 32 H 0.122 0.878 33 H 0.114 0.886 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.109 0.891 37 H 0.142 0.858 38 H 0.137 0.863 39 H 0.210 0.790 40 H 0.242 0.758 41 H 0.246 0.754 42 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 11.974 -17.400 -0.224 21.123 hybrid contribution 1.039 0.633 -0.438 1.293 sum 13.013 -16.767 -0.662 21.235 Atomic orbital electron populations 1.69921 1.05977 1.27029 1.50579 1.24905 0.94836 0.99161 0.95158 0.86527 0.79928 0.83249 0.77923 1.20685 1.21115 1.19932 1.21340 0.93292 0.90315 1.50738 0.92357 1.19343 0.87052 0.82077 0.98427 1.48223 1.45230 1.35442 1.03354 1.21093 0.94924 0.95112 0.87160 1.22754 0.99338 1.03764 0.92146 1.22875 1.01806 0.94732 1.00272 1.22987 0.98783 0.98656 1.02279 1.19993 0.82818 0.84347 0.85215 1.90794 1.56588 1.60494 1.30246 1.21995 1.01777 1.00755 0.78082 1.48804 1.45894 1.06065 1.10311 1.22505 0.92709 0.90245 0.92319 1.31055 1.32101 1.16502 1.12089 1.00320 0.71928 0.72373 0.72823 1.53167 1.35483 1.48270 1.55823 1.93583 1.85689 1.78316 1.38068 1.93575 1.60210 1.60583 1.81972 1.23619 0.96186 0.89282 0.98017 1.77741 1.16792 1.15461 0.96537 0.92723 0.93904 0.94822 0.91601 0.89923 0.87787 0.88634 0.89095 0.89292 0.89056 0.85781 0.86298 0.79024 0.75810 0.75377 0.78557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.24 13.29 55.43 0.74 -25.50 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 7 C -0.52 -14.08 9.39 -34.44 -0.32 -14.41 16 8 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 9 C 0.25 6.18 5.20 -5.19 -0.03 6.15 16 10 N -0.59 -11.23 2.46 -175.06 -0.43 -11.66 16 11 C 0.14 1.93 5.54 -4.04 -0.02 1.91 16 12 C -0.16 -2.18 5.94 -90.62 -0.54 -2.72 16 13 C -0.16 -2.16 10.18 -26.74 -0.27 -2.43 16 14 C -0.19 -1.97 10.25 -26.73 -0.27 -2.25 16 15 C 0.49 9.43 7.70 -10.98 -0.08 9.34 16 16 O -0.51 -12.55 15.30 5.55 0.08 -12.46 16 17 C 0.10 1.25 5.54 -5.20 -0.03 1.22 16 18 N -0.34 -4.72 3.39 -62.55 -0.21 -4.94 16 19 C 0.18 1.95 11.19 -17.22 -0.19 1.76 16 20 C -0.82 -9.30 6.14 -40.01 -0.25 -9.54 16 21 S 2.74 26.85 6.42 -107.50 -0.69 26.16 16 22 N -1.25 -6.57 9.55 60.35 0.58 -5.99 16 23 O -0.97 -12.98 17.87 -57.17 -1.02 -14.00 16 24 O -0.97 -12.31 17.85 -57.17 -1.02 -13.33 16 25 C 0.12 1.63 11.82 -17.37 -0.21 1.42 16 26 N -0.25 -4.17 11.66 30.62 0.36 -3.81 16 27 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 28 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 29 H 0.03 0.84 7.89 -51.93 -0.41 0.43 16 30 H 0.07 0.63 6.44 -51.93 -0.33 0.29 16 31 H 0.08 1.13 7.63 -51.93 -0.40 0.73 16 32 H 0.10 1.62 8.14 -51.93 -0.42 1.19 16 33 H 0.10 1.29 8.03 -51.93 -0.42 0.87 16 34 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.12 0.99 7.33 -51.93 -0.38 0.61 16 38 H 0.12 1.28 8.04 -51.93 -0.42 0.86 16 39 H 0.19 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.42 1.30 8.92 -34.47 -0.31 0.99 16 41 H 0.42 1.49 8.96 -34.47 -0.31 1.18 16 42 H 0.20 2.14 8.06 -52.49 -0.42 1.71 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -40.92 378.46 -8.69 -49.61 By element: Atomic # 1 Polarization: 6.85 SS G_CDS: -5.44 Total: 1.41 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -2.31 Total: -7.92 kcal Atomic # 7 Polarization: -52.93 SS G_CDS: 1.03 Total: -51.90 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -1.96 Total: -39.79 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Atomic # 16 Polarization: 26.85 SS G_CDS: -0.69 Total: 26.16 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -40.92 -8.69 -49.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267975085.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.386 kcal (2) G-P(sol) polarization free energy of solvation -40.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.775 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds