Wall clock time and date at job start Wed Apr 1 2020 01:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45195 * 109.47067 * 2 1 4 4 C 1.34220 * 117.00136 * 180.02562 * 3 2 1 5 5 O 1.20831 * 120.00385 * 359.97438 * 4 3 2 6 6 C 1.50707 * 120.00439 * 180.02562 * 4 3 2 7 7 C 1.50697 * 109.47341 * 179.97438 * 6 4 3 8 8 N 1.29500 * 126.14328 * 90.03991 * 7 6 4 9 9 N 1.26253 * 116.58257 * 179.69624 * 8 7 6 10 10 C 1.29888 * 117.65648 * 0.50684 * 9 8 7 11 11 N 1.39081 * 125.64952 * 179.79791 * 10 9 8 12 12 C 1.34767 * 120.00441 * 359.68639 * 11 10 9 13 13 O 1.21588 * 120.00075 * 0.02562 * 12 11 10 14 14 N 1.34773 * 120.00297 * 179.97438 * 12 11 10 15 15 C 1.46507 * 120.00337 * 180.02562 * 14 12 11 16 16 H 1.09001 * 109.46896 * 325.00217 * 15 14 12 17 17 C 1.50697 * 109.47006 * 205.00517 * 15 14 12 18 18 H 1.07991 * 120.00449 * 359.72165 * 17 15 14 19 19 C 1.37885 * 119.99686 * 179.97438 * 17 15 14 20 20 N 1.31516 * 119.99913 * 359.72095 * 19 17 15 21 21 Si 1.86798 * 119.99766 * 179.72528 * 19 17 15 22 22 H 1.48493 * 109.47326 * 90.00142 * 21 19 17 23 23 H 1.48506 * 109.46545 * 209.99892 * 21 19 17 24 24 H 1.48498 * 109.47210 * 329.99603 * 21 19 17 25 25 C 1.52999 * 109.47144 * 85.00358 * 15 14 12 26 26 C 1.53007 * 109.46852 * 295.00275 * 25 15 14 27 27 S 1.71306 * 108.69298 * 359.52955 * 10 9 8 28 28 H 1.08998 * 109.47582 * 299.99791 * 1 2 3 29 29 H 1.09002 * 109.46974 * 60.00236 * 1 2 3 30 30 H 1.09002 * 109.46923 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46975 * 239.99771 * 2 1 3 32 32 H 1.09002 * 109.46974 * 119.99763 * 2 1 3 33 33 H 1.09003 * 109.46975 * 59.99688 * 6 4 3 34 34 H 1.09000 * 109.46675 * 300.00254 * 6 4 3 35 35 H 0.97003 * 119.99717 * 179.68792 * 11 10 9 36 36 H 0.96999 * 120.00410 * 0.02562 * 14 12 11 37 37 H 0.97000 * 119.99651 * 180.02562 * 20 19 17 38 38 H 1.08999 * 109.47377 * 54.99704 * 25 15 14 39 39 H 1.08991 * 109.46773 * 175.00474 * 25 15 14 40 40 H 1.08996 * 109.46556 * 180.02562 * 26 25 15 41 41 H 1.09004 * 109.47079 * 299.99653 * 26 25 15 42 42 H 1.09002 * 109.47338 * 59.99974 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3446 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0005 6 6 3.9207 2.9374 0.0000 7 6 5.4256 2.8586 -0.0001 8 7 6.1883 2.8198 -1.0460 9 7 7.4319 2.7603 -0.8364 10 6 7.8346 2.7333 0.3982 11 7 9.1590 2.6647 0.8175 12 6 10.1521 2.6137 -0.0921 13 8 9.8904 2.6282 -1.2794 14 7 11.4354 2.5478 0.3143 15 6 12.5151 2.4930 -0.6745 16 1 12.1852 1.9201 -1.5412 17 6 13.7224 1.8295 -0.0637 18 1 13.6905 1.4873 0.9601 19 6 14.8697 1.6639 -0.8104 20 7 14.9084 2.0802 -2.0573 21 14 16.3688 0.8484 -0.0509 22 1 16.3050 -0.6172 -0.2811 23 1 17.5997 1.3947 -0.6767 24 1 16.3935 1.1196 1.4090 25 6 12.8798 3.9134 -1.1107 26 6 11.6924 4.5429 -1.8422 27 16 6.4647 2.8036 1.4243 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.5851 3.4691 0.8905 34 1 3.5843 3.4701 -0.8895 35 1 9.3678 2.6535 1.7647 36 1 11.6443 2.5366 1.2615 37 1 15.7154 1.9634 -2.5827 38 1 13.1243 4.5116 -0.2329 39 1 13.7407 3.8786 -1.7781 40 1 11.9524 5.5546 -2.1533 41 1 11.4479 3.9447 -2.7200 42 1 10.8313 4.5776 -1.1747 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000274664731.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:46:44 Heat of formation + Delta-G solvation = -41.922986 kcal Electronic energy + Delta-G solvation = -26705.687387 eV Core-core repulsion = 22621.142071 eV Total energy + Delta-G solvation = -4084.545316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 342.119 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.32602 -40.70321 -39.59350 -37.06600 -35.87717 -34.52501 -33.17873 -32.43169 -31.92544 -30.88419 -28.80951 -27.03656 -25.65371 -23.82354 -23.17088 -22.27890 -21.42730 -20.04458 -19.70734 -19.29377 -18.17474 -17.76077 -17.52611 -16.96487 -16.64664 -16.03724 -15.77672 -15.12854 -14.87018 -14.65497 -14.37191 -14.22373 -13.66980 -13.53744 -13.31719 -13.12566 -12.97142 -12.69043 -12.46901 -12.23708 -12.01367 -11.66276 -11.28561 -11.17883 -10.98773 -10.92597 -10.87372 -10.79518 -10.63218 -10.37021 -10.21865 -10.14001 -9.67805 -9.63502 -9.37048 -9.08792 -8.65609 -8.53634 -7.90993 -6.15460 -4.25316 0.38048 0.50767 1.10577 1.84933 2.17466 2.72397 2.77916 3.23018 3.29970 3.31179 3.77485 3.82439 4.26383 4.31492 4.47181 4.52260 4.56007 4.61131 4.86383 4.94468 5.11470 5.16587 5.23464 5.34848 5.35837 5.53986 6.05550 6.14168 6.40175 6.46843 6.58894 6.74094 7.05001 7.24673 7.30533 7.37724 7.39117 7.60345 7.76527 7.87442 8.13962 8.56457 8.70829 8.80240 9.10747 9.41854 10.89962 Molecular weight = 342.12amu Principal moments of inertia in cm(-1) A = 0.025168 B = 0.002042 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.272099 B =13705.829052 C =14035.395564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.464 3.536 5 O -0.491 6.491 6 C -0.020 4.020 7 C -0.017 4.017 8 N -0.200 5.200 9 N -0.268 5.268 10 C 0.277 3.723 11 N -0.639 5.639 12 C 0.682 3.318 13 O -0.523 6.523 14 N -0.712 5.712 15 C 0.286 3.714 16 H 0.053 0.947 17 C -0.536 4.536 18 H 0.062 0.938 19 C 0.067 3.933 20 N -0.880 5.880 21 Si 0.903 3.097 22 H -0.280 1.280 23 H -0.285 1.285 24 H -0.274 1.274 25 C -0.128 4.128 26 C -0.137 4.137 27 S 0.103 5.897 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.130 0.870 34 H 0.141 0.859 35 H 0.417 0.583 36 H 0.387 0.613 37 H 0.265 0.735 38 H 0.031 0.969 39 H 0.101 0.899 40 H 0.022 0.978 41 H 0.051 0.949 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.676 2.013 10.815 27.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 O -0.274 6.274 4 C 0.304 3.696 5 O -0.377 6.377 6 C -0.062 4.062 7 C -0.300 4.300 8 N -0.037 5.037 9 N -0.113 5.113 10 C -0.094 4.094 11 N -0.294 5.294 12 C 0.380 3.620 13 O -0.393 6.393 14 N -0.364 5.364 15 C 0.185 3.815 16 H 0.070 0.930 17 C -0.574 4.574 18 H 0.080 0.920 19 C -0.136 4.136 20 N -0.517 5.517 21 Si 0.731 3.269 22 H -0.206 1.206 23 H -0.210 1.210 24 H -0.199 1.199 25 C -0.167 4.167 26 C -0.194 4.194 27 S 0.341 5.659 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.148 0.852 34 H 0.159 0.841 35 H 0.254 0.746 36 H 0.219 0.781 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.119 0.881 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -25.237 1.699 9.168 26.905 hybrid contribution 1.189 -0.666 1.367 1.930 sum -24.048 1.033 10.535 26.275 Atomic orbital electron populations 1.21814 0.92416 1.03120 1.03594 1.23079 0.95406 0.79789 1.02947 1.86461 1.23902 1.32850 1.84211 1.23319 0.80884 0.92210 0.73204 1.90756 1.60309 1.42776 1.43811 1.19547 0.85598 0.92690 1.08361 1.28680 1.00239 1.11520 0.89530 1.71386 0.96638 1.09842 1.25880 1.71638 1.04825 1.20720 1.14150 1.25722 0.91574 0.99629 0.92455 1.42571 1.00606 1.75275 1.10912 1.16221 0.81057 0.79696 0.85046 1.91073 1.81461 1.53423 1.13389 1.45866 1.03376 1.75934 1.11243 1.18821 0.81888 0.93598 0.87211 0.92962 1.21181 0.97090 1.39933 0.99237 0.92017 1.24883 0.98668 0.95276 0.94821 1.69898 1.28684 1.45363 1.07723 0.86425 0.81803 0.79535 0.79179 1.20556 1.21035 1.19887 1.21967 0.98900 0.96480 0.99375 1.21826 0.98639 0.98148 1.00786 1.84489 0.98604 1.71770 1.10991 0.91420 0.91338 0.90130 0.90957 0.91055 0.85165 0.84094 0.74639 0.78119 0.92445 0.94987 0.88129 0.95843 0.92945 0.94456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.66 10.29 37.16 0.38 -0.28 16 2 C 0.06 0.43 6.19 37.16 0.23 0.66 16 3 O -0.36 -3.00 10.22 -39.23 -0.40 -3.40 16 4 C 0.46 4.68 7.95 36.01 0.29 4.97 16 5 O -0.49 -6.93 15.78 -18.75 -0.30 -7.23 16 6 C -0.02 -0.15 6.44 -29.03 -0.19 -0.34 16 7 C -0.02 -0.21 6.29 -13.26 -0.08 -0.29 16 8 N -0.20 -3.41 11.65 33.58 0.39 -3.02 16 9 N -0.27 -5.25 9.73 29.97 0.29 -4.95 16 10 C 0.28 4.46 8.14 -87.05 -0.71 3.75 16 11 N -0.64 -9.82 5.41 -17.32 -0.09 -9.91 16 12 C 0.68 13.79 7.10 -86.93 -0.62 13.17 16 13 O -0.52 -12.92 12.16 5.29 0.06 -12.86 16 14 N -0.71 -14.28 5.03 -59.81 -0.30 -14.58 16 15 C 0.29 7.10 2.24 -69.08 -0.15 6.94 16 16 H 0.05 1.52 7.58 -51.93 -0.39 1.13 16 17 C -0.54 -13.83 8.73 -34.44 -0.30 -14.13 16 18 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 19 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 20 N -0.88 -24.44 11.31 55.43 0.63 -23.82 16 21 Si 0.90 20.37 29.54 -169.99 -5.02 15.35 16 22 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 25 C -0.13 -3.09 5.45 -26.73 -0.15 -3.24 16 26 C -0.14 -3.13 8.51 37.16 0.32 -2.81 16 27 S 0.10 1.14 23.31 -107.50 -2.51 -1.37 16 28 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.55 8.13 -51.93 -0.42 0.13 16 32 H 0.07 0.50 8.13 -51.93 -0.42 0.07 16 33 H 0.13 0.50 8.14 -51.93 -0.42 0.07 16 34 H 0.14 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.42 4.44 8.84 -40.82 -0.36 4.08 16 36 H 0.39 6.42 8.55 -40.82 -0.35 6.07 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 38 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.10 2.68 5.96 -51.93 -0.31 2.38 16 40 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.05 1.30 7.84 -51.93 -0.41 0.89 16 42 H 0.04 0.84 5.64 -51.93 -0.29 0.55 16 LS Contribution 371.79 15.07 5.60 5.60 Total: -1.00 -36.07 371.79 -8.18 -44.24 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -5.46 Total: 5.85 kcal Atomic # 6 Polarization: 11.16 SS G_CDS: -1.08 Total: 10.08 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.92 Total: -56.28 kcal Atomic # 8 Polarization: -22.85 SS G_CDS: -0.63 Total: -23.48 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 1.14 SS G_CDS: -2.51 Total: -1.37 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -36.07 -8.18 -44.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000274664731.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.321 kcal (2) G-P(sol) polarization free energy of solvation -36.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds